Wall clock time and date at job start Fri Apr 10 2020 23:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00217 * 2 1 4 4 H 1.48495 * 109.47211 * 240.00060 * 3 2 1 5 5 H 1.48503 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47249 * 120.00350 * 3 2 1 7 7 C 1.37883 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99789 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47209 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.47286 * 55.00277 * 10 9 7 12 12 N 1.46497 * 109.47232 * 295.00261 * 10 9 7 13 13 C 1.34780 * 119.99994 * 154.99792 * 12 10 9 14 14 O 1.21587 * 119.99914 * 355.01195 * 13 12 10 15 15 N 1.34781 * 119.99789 * 175.01848 * 13 12 10 16 16 C 1.46927 * 120.62666 * 184.94972 * 15 13 12 17 17 C 1.52770 * 109.00535 * 233.58099 * 16 15 13 18 18 C 1.53040 * 109.38037 * 305.58696 * 17 16 15 19 19 N 1.46896 * 109.44770 * 181.25430 * 18 17 16 20 20 C 1.53042 * 109.53876 * 61.23889 * 18 17 16 21 21 C 1.46919 * 120.63056 * 5.22266 * 15 13 12 22 22 C 1.50699 * 109.47219 * 175.00098 * 10 9 7 23 23 C 1.38239 * 119.99765 * 79.72728 * 22 10 9 24 24 C 1.38236 * 119.99666 * 179.80673 * 23 22 10 25 25 C 1.38234 * 120.00386 * 0.40373 * 24 23 22 26 26 C 1.38239 * 119.99704 * 359.84809 * 25 24 23 27 27 C 1.38233 * 120.00282 * 260.00139 * 22 10 9 28 28 H 0.96999 * 119.99748 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47353 * 300.00552 * 9 7 2 30 30 H 1.08997 * 109.46869 * 60.00507 * 9 7 2 31 31 H 0.97003 * 119.99826 * 335.00405 * 12 10 9 32 32 H 1.09000 * 109.58691 * 353.41223 * 16 15 13 33 33 H 1.08996 * 109.59057 * 113.84062 * 16 15 13 34 34 H 1.08993 * 109.56111 * 185.55368 * 17 16 15 35 35 H 1.08998 * 109.38611 * 65.51466 * 17 16 15 36 36 H 1.09001 * 109.45972 * 301.22279 * 18 17 16 37 37 H 1.00898 * 111.00245 * 59.94121 * 19 18 17 38 38 H 1.00902 * 110.99856 * 183.89273 * 19 18 17 39 39 H 1.08996 * 109.49969 * 178.68010 * 20 18 17 40 40 H 1.09006 * 109.52075 * 58.60565 * 20 18 17 41 41 H 1.09005 * 109.58598 * 246.15870 * 21 15 13 42 42 H 1.08999 * 109.59294 * 6.44357 * 21 15 13 43 43 H 1.08002 * 120.00171 * 0.02562 * 23 22 10 44 44 H 1.08001 * 119.99746 * 180.23042 * 24 23 22 45 45 H 1.07994 * 120.00025 * 179.83051 * 25 24 23 46 46 H 1.07997 * 119.99644 * 179.97438 * 26 25 24 47 47 H 1.07999 * 119.99906 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 7 3.0062 -3.6540 -1.2523 13 6 4.2309 -4.2147 -1.3000 14 8 4.7420 -4.6461 -0.2846 15 7 4.8891 -4.2970 -2.4733 16 6 6.1758 -5.0008 -2.5619 17 6 7.2118 -4.0668 -3.1851 18 6 6.6859 -3.5466 -4.5248 19 7 7.6935 -2.6721 -5.1395 20 6 5.3958 -2.7558 -4.2959 21 6 4.3365 -3.6795 -3.6865 22 6 1.4957 -4.9637 0.1233 23 6 0.8893 -5.5204 -0.9873 24 6 0.2053 -6.7163 -0.8745 25 6 0.1205 -7.3514 0.3504 26 6 0.7225 -6.7920 1.4620 27 6 1.4099 -5.5980 1.3485 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 0.8896 30 1 0.6241 -2.5567 -0.8903 31 1 2.6287 -3.2450 -2.0467 32 1 6.5024 -5.2924 -1.5637 33 1 6.0651 -5.8875 -3.1860 34 1 8.1429 -4.6101 -3.3460 35 1 7.3919 -3.2270 -2.5140 36 1 6.4831 -4.3884 -5.1869 37 1 8.5554 -3.1712 -5.3010 38 1 7.3456 -2.2651 -5.9947 39 1 5.0344 -2.3658 -5.2474 40 1 5.5920 -1.9279 -3.6145 41 1 4.0727 -4.4564 -4.4042 42 1 3.4484 -3.1017 -3.4306 43 1 0.9530 -5.0228 -1.9437 44 1 -0.2653 -7.1532 -1.7429 45 1 -0.4162 -8.2843 0.4390 46 1 0.6560 -7.2879 2.4191 47 1 1.8802 -5.1611 2.2169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:48 Heat of formation + Delta-G solvation = -28.342090 kcal Electronic energy + Delta-G solvation = -27264.156034 eV Core-core repulsion = 23638.300060 eV Total energy + Delta-G solvation = -3625.855974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55779 -40.14292 -38.79101 -36.81212 -35.41024 -34.72007 -32.83222 -31.82698 -31.62730 -30.74633 -30.28865 -26.77088 -25.05909 -24.34439 -23.77722 -23.33582 -22.10932 -21.24131 -20.45074 -19.17490 -18.54744 -17.70283 -17.29815 -16.65816 -16.48485 -16.43183 -16.21261 -15.98292 -15.87849 -15.30193 -15.03486 -14.76890 -14.54146 -14.34938 -14.17952 -13.94608 -13.93780 -13.64764 -13.47867 -13.15604 -12.95446 -12.79709 -12.65346 -12.45959 -12.22657 -12.14577 -11.88903 -11.85473 -11.58627 -11.47565 -11.34732 -11.10966 -10.59089 -10.10968 -9.74641 -9.56922 -9.53800 -9.43137 -8.20847 -6.30509 0.52333 0.57371 1.37949 1.39704 1.47807 1.73640 2.21275 2.38905 2.91101 3.08120 3.15959 3.49979 3.75567 3.83007 4.00941 4.04785 4.10217 4.22084 4.25478 4.32245 4.33199 4.43666 4.50490 4.64456 4.68577 4.73708 4.76319 4.80245 4.81895 4.84585 4.98834 5.13806 5.15105 5.21249 5.29704 5.35943 5.42477 5.60674 5.62621 5.63814 5.65688 5.77476 5.90003 6.04874 6.17015 6.21745 6.29048 6.65703 6.81076 7.05513 7.37972 7.64860 8.89555 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007666 B = 0.005717 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3651.784559 B = 4896.590659 C = 7751.282032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.528 4.528 8 H 0.047 0.953 9 C 0.040 3.960 10 C 0.216 3.784 11 H 0.053 0.947 12 N -0.712 5.712 13 C 0.703 3.297 14 O -0.639 6.639 15 N -0.627 5.627 16 C 0.130 3.870 17 C -0.121 4.121 18 C 0.100 3.900 19 N -0.858 5.858 20 C -0.126 4.126 21 C 0.110 3.890 22 C -0.098 4.098 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.123 4.123 27 C -0.134 4.134 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.013 0.987 31 H 0.402 0.598 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.350 0.650 38 H 0.350 0.650 39 H 0.095 0.905 40 H 0.046 0.954 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.147 0.853 45 H 0.152 0.848 46 H 0.144 0.856 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -13.117 -12.502 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.066 0.934 9 C 0.002 3.998 10 C 0.110 3.890 11 H 0.071 0.929 12 N -0.367 5.367 13 C 0.404 3.596 14 O -0.521 6.521 15 N -0.365 5.365 16 C 0.007 3.993 17 C -0.159 4.159 18 C -0.011 4.011 19 N -0.390 5.390 20 C -0.164 4.164 21 C -0.013 4.013 22 C -0.099 4.099 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.153 4.153 28 H 0.073 0.927 29 H 0.024 0.976 30 H 0.031 0.969 31 H 0.239 0.761 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.137 0.863 44 H 0.165 0.835 45 H 0.170 0.830 46 H 0.161 0.839 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.967 -12.872 -11.125 18.787 hybrid contribution 0.116 1.000 -0.585 1.164 sum 8.084 -11.872 -11.710 18.532 Atomic orbital electron populations 1.70053 1.07284 1.27776 1.51172 1.25717 0.95562 1.02388 0.94770 0.85700 0.78440 0.79235 0.78850 1.19271 1.20479 1.20342 1.21314 0.92718 0.91712 1.50905 0.93447 1.19118 0.93197 0.91020 0.96443 1.19587 0.91669 0.92003 0.85714 0.92887 1.45099 1.16385 1.61163 1.14028 1.16055 0.81191 0.78653 0.83691 1.90813 1.69277 1.57332 1.34671 1.47302 1.23232 1.58646 1.07314 1.21415 0.81434 0.94580 1.01869 1.21818 0.98552 0.99005 0.96563 1.21189 0.91309 0.93900 0.94726 1.58606 1.07334 1.39220 1.33838 1.21917 0.94904 0.97889 1.01734 1.21797 0.96428 0.96913 0.86155 1.20476 0.98257 0.96354 0.94809 1.21030 0.98033 0.96703 0.97928 1.21432 0.98888 0.94872 0.98956 1.21467 0.99909 1.00940 0.92356 1.21380 0.97513 0.95054 1.00183 1.21172 1.00499 0.96683 0.96921 0.92653 0.97631 0.96863 0.76051 0.91247 0.89469 0.88817 0.93734 0.92471 0.83571 0.83584 0.88698 0.93552 0.88586 0.90653 0.86334 0.83507 0.83035 0.83868 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.27 13.29 21.45 0.28 -53.99 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.53 -29.53 8.84 25.60 0.23 -29.31 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16 9 C 0.04 2.05 4.49 29.85 0.13 2.18 16 10 C 0.22 9.69 2.16 44.25 0.10 9.79 16 11 H 0.05 2.70 7.37 -2.38 -0.02 2.68 16 12 N -0.71 -28.16 3.95 -461.40 -1.82 -29.98 16 13 C 0.70 27.74 8.25 179.05 1.48 29.22 16 14 O -0.64 -30.32 15.39 -3.99 -0.06 -30.38 16 15 N -0.63 -18.48 2.98 -837.73 -2.49 -20.98 16 16 C 0.13 3.20 6.41 86.22 0.55 3.76 16 17 C -0.12 -2.49 5.64 30.53 0.17 -2.32 16 18 C 0.10 1.70 3.21 44.94 0.14 1.84 16 19 N -0.86 -13.01 9.25 -168.57 -1.56 -14.57 16 20 C -0.13 -2.57 5.62 30.67 0.17 -2.39 16 21 C 0.11 2.47 6.39 86.36 0.55 3.02 16 22 C -0.10 -3.87 4.91 -19.87 -0.10 -3.97 16 23 C -0.12 -4.04 9.32 22.27 0.21 -3.84 16 24 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 25 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 26 C -0.12 -3.64 10.05 22.27 0.22 -3.41 16 27 C -0.13 -4.97 9.67 22.27 0.22 -4.75 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.40 14.54 6.09 -92.71 -0.56 13.97 16 32 H 0.07 2.08 6.99 -2.39 -0.02 2.07 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.35 4.04 9.04 -89.70 -0.81 3.23 16 38 H 0.35 4.20 8.99 -89.69 -0.81 3.39 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.08 1.85 5.64 -2.39 -0.01 1.84 16 43 H 0.12 3.81 7.73 -2.91 -0.02 3.78 16 44 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 46 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 47 H 0.11 4.13 8.04 -2.91 -0.02 4.10 16 Total: -1.00 -73.24 379.62 0.17 -73.07 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -1.19 Total: 35.60 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 4.99 Total: -5.22 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -5.59 Total: -119.52 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.06 Total: -30.38 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.24 0.17 -73.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.729 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds