Wall clock time and date at job start Fri Apr 10 2020 23:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46999 * 240.00057 * 3 2 1 5 5 H 1.48497 * 109.47488 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47413 * 119.99809 * 3 2 1 7 7 C 1.38811 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00474 * 195.67619 * 7 2 1 9 9 N 1.36938 * 119.99701 * 15.68014 * 7 2 1 10 10 C 1.47607 * 118.64322 * 26.50568 * 9 7 2 11 11 C 1.53950 * 112.13913 * 137.86986 * 10 9 7 12 12 C 1.50879 * 110.09589 * 319.43270 * 11 10 9 13 13 C 1.52560 * 109.36022 * 91.89100 * 12 11 10 14 14 C 1.47093 * 114.33002 * 274.98701 * 13 12 11 15 15 H 1.09002 * 109.32679 * 302.71143 * 14 13 12 16 16 N 1.46493 * 109.33279 * 183.05412 * 14 13 12 17 17 C 1.34780 * 120.00414 * 154.37394 * 16 14 13 18 18 O 1.21694 * 119.99601 * 0.02562 * 17 16 14 19 19 C 1.46674 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.37645 * 126.23213 * 359.69316 * 19 17 16 21 21 H 0.97005 * 125.68419 * 0.02562 * 20 19 17 22 22 C 1.35534 * 108.64769 * 179.88657 * 20 19 17 23 23 C 1.35455 * 108.86761 * 0.37982 * 22 20 19 24 24 C 1.37875 * 126.23440 * 180.02562 * 19 17 16 25 25 C 1.50702 * 126.45382 * 359.92926 * 24 19 17 26 26 C 1.52999 * 117.49601 * 188.74584 * 25 24 19 27 27 C 1.52997 * 117.49347 * 120.08883 * 25 24 19 28 28 C 1.44663 * 118.81355 * 206.51080 * 9 7 2 29 29 H 0.96992 * 120.00299 * 0.02562 * 1 2 3 30 30 H 1.08998 * 108.94924 * 17.18167 * 10 9 7 31 31 H 1.08998 * 108.94464 * 258.54960 * 10 9 7 32 32 H 1.09000 * 109.36809 * 199.24161 * 11 10 9 33 33 H 1.09000 * 109.26761 * 79.56009 * 11 10 9 34 34 H 1.09007 * 109.48757 * 331.92821 * 12 11 10 35 35 H 1.09005 * 109.49193 * 211.85839 * 12 11 10 36 36 H 1.08995 * 108.51657 * 153.72681 * 13 12 11 37 37 H 1.09004 * 108.38547 * 36.15040 * 13 12 11 38 38 H 0.97007 * 120.00029 * 334.65678 * 16 14 13 39 39 H 1.07995 * 125.57014 * 180.18307 * 22 20 19 40 40 H 1.07993 * 126.06884 * 179.75038 * 23 22 20 41 41 H 1.08997 * 115.55242 * 334.41698 * 25 24 19 42 42 H 1.09008 * 117.49934 * 0.02562 * 26 25 24 43 43 H 1.08998 * 117.49977 * 145.02310 * 26 25 24 44 44 H 1.09004 * 117.49716 * 214.97650 * 27 25 24 45 45 H 1.08998 * 117.50667 * 359.97438 * 27 25 24 46 46 H 1.09000 * 109.61462 * 150.83262 * 28 9 7 47 47 H 1.08998 * 109.31973 * 30.89173 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0602 -1.2194 0.2532 9 7 1.3639 -2.3661 -0.3195 10 6 0.1799 -2.2993 -1.1984 11 6 0.1722 -3.4256 -2.2479 12 6 1.5636 -3.6367 -2.7920 13 6 2.2717 -4.7078 -1.9681 14 6 2.9233 -4.2031 -0.7498 15 1 3.6397 -3.4269 -1.0190 16 7 3.6268 -5.3027 -0.0850 17 6 4.6831 -5.0436 0.7110 18 8 5.0522 -3.8960 0.8778 19 6 5.3878 -6.1446 1.3762 20 7 5.0782 -7.4826 1.2835 21 1 4.3520 -7.8606 0.7631 22 6 5.9588 -8.1845 2.0377 23 6 6.8235 -7.3196 2.6201 24 6 6.4769 -6.0274 2.2134 25 6 7.1650 -4.7477 2.6138 26 6 8.4790 -4.8648 3.3887 27 6 7.2065 -4.4045 4.1042 28 6 1.8664 -3.6126 0.2159 29 1 -0.4850 0.8399 -0.0004 30 1 0.1736 -1.3375 -1.7112 31 1 -0.7192 -2.3788 -0.5874 32 1 -0.4977 -3.1547 -3.0640 33 1 -0.1780 -4.3475 -1.7837 34 1 2.1230 -2.7030 -2.7323 35 1 1.5026 -3.9587 -3.8316 36 1 3.0276 -5.1823 -2.5937 37 1 1.5385 -5.4617 -1.6815 38 1 3.3349 -6.2178 -0.2209 39 1 5.9675 -9.2577 2.1577 40 1 7.6360 -7.5815 3.2815 41 1 7.0679 -3.9215 1.9095 42 1 8.8461 -5.8674 3.6086 43 1 9.2463 -4.1154 3.1946 44 1 7.1371 -3.3524 4.3805 45 1 6.7358 -5.1039 4.7951 46 1 1.0445 -4.3193 0.3306 47 1 2.3249 -3.4289 1.1875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034237636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:42 Heat of formation + Delta-G solvation = 33.761844 kcal Electronic energy + Delta-G solvation = -27263.849861 eV Core-core repulsion = 23640.686916 eV Total energy + Delta-G solvation = -3623.162946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.33666 -40.61692 -39.03166 -37.89026 -36.23825 -34.85706 -32.92757 -32.13214 -31.46278 -29.97996 -27.90884 -26.03309 -25.15400 -24.12888 -23.24818 -22.86187 -21.76222 -21.49626 -20.90378 -19.94807 -19.23420 -18.61863 -17.45999 -16.78541 -16.71360 -16.39161 -16.37256 -15.95013 -15.52633 -15.17760 -15.00592 -14.77150 -14.55683 -14.29712 -14.11050 -13.87999 -13.79961 -13.51542 -13.13948 -13.02447 -12.82892 -12.52323 -12.45009 -12.34996 -12.33034 -12.06228 -11.69801 -11.68590 -11.50282 -11.42283 -11.39413 -11.17030 -10.85686 -10.53805 -10.20261 -9.56906 -9.05200 -8.65046 -7.89641 -5.35231 0.48695 1.40535 1.41845 1.49859 1.83646 2.07850 2.28884 2.35220 2.49988 3.16156 3.23130 3.69481 3.77883 3.87640 3.99667 4.06377 4.08070 4.22538 4.25412 4.33044 4.40229 4.48481 4.50645 4.61853 4.67850 4.73138 4.79727 4.92807 4.96785 5.02128 5.05309 5.08747 5.19517 5.22297 5.25104 5.28614 5.33649 5.39025 5.50615 5.60873 5.62888 5.69075 5.79636 5.81459 5.96064 6.38628 6.56128 6.70163 7.16487 7.28947 7.92278 8.27294 9.14548 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013427 B = 0.004025 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.864514 B = 6955.388933 C = 8604.113664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.040 4.040 3 Si 0.957 3.043 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.263 4.263 8 H 0.046 0.954 9 N -0.597 5.597 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.098 4.098 13 C -0.108 4.108 14 C 0.137 3.863 15 H 0.044 0.956 16 N -0.709 5.709 17 C 0.576 3.424 18 O -0.572 6.572 19 C -0.082 4.082 20 N -0.525 5.525 21 H 0.432 0.568 22 C 0.055 3.945 23 C -0.228 4.228 24 C -0.059 4.059 25 C -0.117 4.117 26 C -0.150 4.150 27 C -0.172 4.172 28 C 0.160 3.840 29 H 0.251 0.749 30 H 0.040 0.960 31 H -0.005 1.005 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.407 0.593 39 H 0.220 0.780 40 H 0.160 0.840 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.050 0.950 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.204 -22.665 0.235 24.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.236 4.236 3 Si 0.785 3.215 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.394 4.394 8 H 0.064 0.936 9 N -0.319 5.319 10 C 0.059 3.941 11 C -0.169 4.169 12 C -0.136 4.136 13 C -0.146 4.146 14 C 0.030 3.970 15 H 0.063 0.937 16 N -0.360 5.360 17 C 0.365 3.635 18 O -0.451 6.451 19 C -0.194 4.194 20 N -0.122 5.122 21 H 0.272 0.728 22 C -0.082 4.082 23 C -0.252 4.252 24 C -0.068 4.068 25 C -0.136 4.136 26 C -0.187 4.187 27 C -0.210 4.210 28 C 0.032 3.968 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.013 0.987 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.244 0.756 39 H 0.237 0.763 40 H 0.178 0.822 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.068 0.932 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 10.140 -21.741 0.223 23.990 hybrid contribution -0.268 1.244 -0.028 1.273 sum 9.872 -20.497 0.195 22.751 Atomic orbital electron populations 1.70196 1.06104 1.25767 1.55504 1.25610 0.96038 1.00860 1.01085 0.85515 0.77828 0.80097 0.78079 1.20559 1.20968 1.21092 1.19285 0.91955 0.86554 1.41586 0.93639 1.43729 1.32375 1.01727 1.54027 1.20877 0.86582 0.96645 0.89956 1.21941 0.97445 0.99059 0.98436 1.20810 0.95613 0.98312 0.98902 1.20520 1.00314 0.98945 0.94773 1.20702 0.94041 0.88135 0.94170 0.93734 1.45771 1.31138 1.10516 1.48602 1.17535 0.79843 0.87583 0.78507 1.90847 1.67459 1.23017 1.63743 1.19889 1.04179 0.83972 1.11393 1.41886 1.27167 1.04341 1.38839 0.72815 1.22708 0.90963 0.99537 0.95010 1.20982 1.05213 0.90522 1.08434 1.19318 0.94948 0.94724 0.97804 1.20479 1.01562 0.96198 0.95332 1.23063 0.89994 1.03739 1.01880 1.22966 1.02495 1.01879 0.93617 1.20986 0.94400 0.87764 0.93687 0.94024 0.94162 0.98710 0.90959 0.91499 0.94382 0.89719 0.90683 0.89945 0.75626 0.76347 0.82250 0.89672 0.86529 0.88173 0.89509 0.88135 0.93187 0.97155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 11.01 21.65 0.24 -56.53 16 2 C -0.04 -2.39 4.87 84.86 0.41 -1.98 16 3 Si 0.96 48.49 29.58 68.60 2.03 50.51 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 7 C -0.26 -15.78 9.45 84.03 0.79 -14.98 16 8 H 0.05 2.89 7.88 -2.91 -0.02 2.87 16 9 N -0.60 -31.30 2.27 -698.16 -1.59 -32.89 16 10 C 0.18 8.97 4.66 86.49 0.40 9.37 16 11 C -0.13 -4.52 5.70 30.23 0.17 -4.35 16 12 C -0.10 -3.14 5.51 29.76 0.16 -2.98 16 13 C -0.11 -3.02 4.55 28.61 0.13 -2.89 16 14 C 0.14 4.99 2.35 43.79 0.10 5.09 16 15 H 0.04 2.06 7.56 -2.39 -0.02 2.04 16 16 N -0.71 -20.60 5.05 -452.27 -2.28 -22.89 16 17 C 0.58 20.29 7.75 86.45 0.67 20.96 16 18 O -0.57 -26.63 14.53 -4.33 -0.06 -26.69 16 19 C -0.08 -2.23 7.06 40.35 0.28 -1.95 16 20 N -0.53 -8.23 5.99 -183.63 -1.10 -9.33 16 21 H 0.43 3.67 8.19 -92.70 -0.76 2.91 16 22 C 0.05 0.68 11.89 83.48 0.99 1.67 16 23 C -0.23 -4.17 10.15 22.01 0.22 -3.95 16 24 C -0.06 -1.60 5.87 -19.56 -0.11 -1.72 16 25 C -0.12 -3.51 5.61 -11.54 -0.06 -3.57 16 26 C -0.15 -3.24 10.04 30.62 0.31 -2.93 16 27 C -0.17 -4.44 10.24 30.62 0.31 -4.12 16 28 C 0.16 7.15 5.24 87.36 0.46 7.61 16 29 H 0.25 14.80 8.31 -92.71 -0.77 14.02 16 30 H 0.04 2.22 6.33 -2.39 -0.02 2.20 16 31 H -0.01 -0.28 8.03 -2.39 -0.02 -0.30 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 2.05 7.31 -2.39 -0.02 2.03 16 34 H 0.04 1.54 7.48 -2.38 -0.02 1.52 16 35 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.88 7.34 -2.38 -0.02 1.87 16 38 H 0.41 7.77 7.71 -92.70 -0.71 7.05 16 39 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 40 H 0.16 2.18 7.25 -2.91 -0.02 2.16 16 41 H 0.09 3.22 6.66 -2.39 -0.02 3.21 16 42 H 0.12 1.94 7.03 -2.38 -0.02 1.92 16 43 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 47 H 0.01 0.52 7.98 -2.39 -0.02 0.50 16 Total: -1.00 -81.51 370.71 2.00 -79.52 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.48 Total: 19.03 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.25 Total: -0.72 kcal Atomic # 7 Polarization: -116.91 SS G_CDS: -4.73 Total: -121.64 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.51 kcal Total: -81.51 2.00 -79.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034237636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.277 kcal (2) G-P(sol) polarization free energy of solvation -81.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds