Wall clock time and date at job start Fri Apr 10 2020 23:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31689 * 119.71572 * 2 1 4 4 C 1.31926 * 121.87707 * 180.02562 * 3 2 1 5 5 C 1.38356 * 121.07979 * 359.97438 * 4 3 2 6 6 C 1.38356 * 119.30222 * 359.70571 * 5 4 3 7 7 C 1.39525 * 119.71319 * 179.97438 * 2 1 3 8 8 C 1.47838 * 120.56095 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99905 * 323.88494 * 8 7 2 10 10 N 1.34781 * 119.99913 * 143.89365 * 8 7 2 11 11 C 1.48305 * 127.77016 * 354.77190 * 10 8 7 12 12 C 1.54387 * 104.53830 * 219.51804 * 11 10 8 13 13 H 1.08993 * 110.34141 * 95.18570 * 12 11 10 14 14 C 1.53004 * 110.34128 * 217.33667 * 12 11 10 15 15 C 1.54284 * 105.05336 * 336.26198 * 12 11 10 16 16 C 1.53006 * 110.34496 * 241.07792 * 15 12 11 17 17 C 1.52991 * 110.34448 * 118.92408 * 15 12 11 18 18 N 1.46502 * 109.47399 * 180.02562 * 17 15 12 19 19 C 1.36932 * 120.00135 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00443 * 359.97438 * 19 18 17 21 21 C 1.38821 * 120.00045 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99548 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99915 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46951 * 89.99584 * 23 21 19 25 25 H 1.48498 * 109.47036 * 209.99693 * 23 21 19 26 26 H 1.48505 * 109.47186 * 329.99552 * 23 21 19 27 27 C 1.48146 * 127.83500 * 174.84531 * 10 8 7 28 28 H 1.09004 * 109.47357 * 263.99627 * 1 2 3 29 29 H 1.09002 * 109.47023 * 23.99945 * 1 2 3 30 30 H 1.09004 * 109.47326 * 144.00192 * 1 2 3 31 31 H 1.07996 * 119.45875 * 180.02562 * 4 3 2 32 32 H 1.08006 * 120.34718 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.85384 * 180.29252 * 6 5 4 34 34 H 1.09007 * 110.38092 * 100.79220 * 11 10 8 35 35 H 1.09000 * 110.50791 * 338.31232 * 11 10 8 36 36 H 1.09001 * 109.46937 * 177.12232 * 14 12 11 37 37 H 1.09004 * 109.46982 * 57.13192 * 14 12 11 38 38 H 1.08994 * 109.47382 * 297.12576 * 14 12 11 39 39 H 1.09007 * 109.46863 * 59.99576 * 16 15 12 40 40 H 1.08993 * 109.47191 * 179.97438 * 16 15 12 41 41 H 1.08998 * 109.46536 * 300.00415 * 16 15 12 42 42 H 1.08999 * 109.47260 * 299.99857 * 17 15 12 43 43 H 1.08998 * 109.47244 * 59.99704 * 17 15 12 44 44 H 0.97003 * 120.00075 * 359.97438 * 18 17 15 45 45 H 0.97004 * 119.99241 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.40886 * 21.62805 * 27 10 8 47 47 H 1.09002 * 110.50192 * 259.25123 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 -0.0005 5 6 4.2365 0.0363 -0.0005 6 6 3.5986 -1.1914 0.0062 7 6 2.1986 -1.2118 0.0005 8 6 1.4655 -2.4956 0.0005 9 8 0.4254 -2.6016 0.6206 10 7 1.9506 -3.5486 -0.6869 11 6 3.1339 -3.5830 -1.5803 12 6 2.7033 -4.4819 -2.7593 13 1 2.3303 -3.8735 -3.5831 14 6 3.8770 -5.3454 -3.2260 15 6 1.5751 -5.3701 -2.1948 16 6 1.9709 -6.8461 -2.2722 17 6 0.2737 -5.1285 -2.9619 18 7 -0.7835 -5.9799 -2.4106 19 6 -2.0448 -5.9359 -2.9418 20 1 -2.2605 -5.2732 -3.7669 21 6 -3.0466 -6.7422 -2.4191 22 7 -2.7839 -7.5494 -1.4132 23 14 -4.7675 -6.6816 -3.1433 24 1 -4.8791 -7.6786 -4.2382 25 1 -5.7611 -6.9950 -2.0852 26 1 -5.0302 -5.3230 -3.6823 27 6 1.4221 -4.9321 -0.7222 28 1 -0.3634 -0.1075 1.0221 29 1 -0.3633 0.9388 -0.4180 30 1 -0.3634 -0.8314 -0.6040 31 1 3.9734 2.1532 -0.0001 32 1 5.3152 0.0908 -0.0005 33 1 4.1659 -2.1103 0.0111 34 1 3.9882 -4.0189 -1.0622 35 1 3.3741 -2.5806 -1.9345 36 1 3.5446 -6.0100 -4.0235 37 1 4.2470 -5.9384 -2.3895 38 1 4.6755 -4.7031 -3.5974 39 1 2.8777 -7.0101 -1.6899 40 1 1.1651 -7.4599 -1.8699 41 1 2.1523 -7.1195 -3.3117 42 1 -0.0159 -4.0821 -2.8657 43 1 0.4224 -5.3690 -4.0146 44 1 -0.5897 -6.5754 -1.6698 45 1 -3.4839 -8.1131 -1.0482 46 1 0.3724 -4.9457 -0.4288 47 1 2.0066 -5.5809 -0.0700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182421488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:35:49 Heat of formation + Delta-G solvation = 18.324957 kcal Electronic energy + Delta-G solvation = -27479.288929 eV Core-core repulsion = 23855.456590 eV Total energy + Delta-G solvation = -3623.832339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97028 -39.80135 -38.03913 -34.86564 -33.59594 -32.95140 -32.45839 -31.52262 -29.61040 -28.15309 -26.95244 -25.85678 -25.67461 -24.27713 -23.19761 -22.31205 -21.14933 -19.81294 -18.40662 -17.58689 -17.00503 -16.74544 -16.31327 -16.05059 -15.32462 -14.96036 -14.65514 -14.42885 -14.20432 -13.93020 -13.60889 -13.55446 -13.31051 -13.02455 -12.91002 -12.68685 -12.48530 -12.28289 -12.13937 -11.96937 -11.88467 -11.53352 -11.43977 -11.24144 -10.96314 -10.80169 -10.53356 -10.33371 -10.19180 -10.10680 -10.02313 -9.88906 -9.56874 -9.54414 -9.17160 -8.83381 -8.58497 -6.87096 -5.72099 -2.99967 0.55520 0.95412 2.76567 2.95783 3.47255 3.52643 3.54445 3.58429 4.05832 4.33068 4.45775 4.53773 4.55904 4.64726 4.76007 4.79787 4.88577 5.17759 5.26992 5.32592 5.34158 5.35668 5.47688 5.52707 5.56785 5.65657 5.69906 5.73641 5.76695 5.83451 5.91172 5.94698 6.00682 6.08702 6.12324 6.16552 6.21345 6.31527 6.42534 6.44222 6.53569 6.70625 6.80327 6.88824 7.59212 7.71967 7.74611 8.20507 8.46879 9.58327 10.15113 10.49877 11.50904 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013796 B = 0.003956 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.064424 B = 7075.674053 C = 8493.399302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.186 3.814 3 N -0.489 5.489 4 C 0.120 3.880 5 C -0.190 4.190 6 C -0.042 4.042 7 C -0.177 4.177 8 C 0.579 3.421 9 O -0.517 6.517 10 N -0.613 5.613 11 C 0.102 3.898 12 C -0.098 4.098 13 H 0.082 0.918 14 C -0.141 4.141 15 C -0.075 4.075 16 C -0.134 4.134 17 C 0.169 3.831 18 N -0.728 5.728 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.114 3.886 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.384 0.616 45 H 0.255 0.745 46 H 0.101 0.899 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.311 11.954 0.735 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 N -0.198 5.198 4 C -0.037 4.037 5 C -0.210 4.210 6 C -0.069 4.069 7 C -0.182 4.182 8 C 0.367 3.633 9 O -0.393 6.393 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.118 4.118 13 H 0.100 0.900 14 C -0.199 4.199 15 C -0.076 4.076 16 C -0.191 4.191 17 C 0.041 3.959 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.086 0.914 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.008 4.008 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.176 0.824 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.038 0.962 44 H 0.219 0.781 45 H 0.064 0.936 46 H 0.120 0.880 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.060 12.810 1.052 22.989 hybrid contribution -0.207 -0.959 -0.179 0.998 sum 18.854 11.851 0.872 22.286 Atomic orbital electron populations 1.20848 0.87542 1.03538 1.04378 1.21494 0.97564 0.86522 0.89672 1.67650 1.09968 1.28582 1.13623 1.22958 0.89470 0.98712 0.92553 1.22059 1.01658 0.93052 1.04207 1.21860 0.93044 0.99057 0.92899 1.20815 0.94566 0.94947 1.07854 1.17583 0.84323 0.82024 0.79374 1.90855 1.22275 1.82923 1.43266 1.48831 1.29629 1.10265 1.45937 1.22676 0.88346 1.00357 0.90780 1.22152 0.95890 0.96589 0.97177 0.89984 1.21892 0.96749 0.99547 1.01682 1.21705 0.95750 0.95636 0.94555 1.21870 1.00951 0.94399 1.01896 1.20639 0.86327 0.94242 0.94650 1.42379 1.06408 1.47903 1.40646 1.19194 0.86667 1.18666 1.12364 0.91372 1.24704 0.98113 0.99413 0.98583 1.69649 1.32738 1.28650 1.27126 0.86207 0.84680 0.77481 0.77942 1.21820 1.21776 1.20812 1.22584 1.02161 0.79976 0.96081 0.89237 0.90668 0.89671 0.82355 0.84242 0.84215 0.90975 0.90606 0.91632 0.92078 0.93087 0.93125 0.91222 0.92141 0.96517 0.96231 0.78106 0.93559 0.88021 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 8.80 36.01 0.32 -1.16 16 2 C 0.19 2.56 6.82 -82.17 -0.56 2.00 16 3 N -0.49 -6.14 10.26 -9.14 -0.09 -6.24 16 4 C 0.12 1.11 11.17 -17.47 -0.20 0.92 16 5 C -0.19 -1.52 10.10 -39.49 -0.40 -1.92 16 6 C -0.04 -0.42 8.06 -38.87 -0.31 -0.73 16 7 C -0.18 -2.37 5.46 -104.82 -0.57 -2.94 16 8 C 0.58 9.44 7.01 -12.33 -0.09 9.35 16 9 O -0.52 -10.47 15.15 5.32 0.08 -10.39 16 10 N -0.61 -8.95 3.32 -170.28 -0.56 -9.51 16 11 C 0.10 1.08 4.83 -2.32 -0.01 1.07 16 12 C -0.10 -1.14 3.30 -89.22 -0.29 -1.44 16 13 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 14 C -0.14 -1.28 7.93 37.16 0.29 -0.99 16 15 C -0.08 -1.15 0.73 -153.11 -0.11 -1.26 16 16 C -0.13 -1.92 7.11 37.16 0.26 -1.66 16 17 C 0.17 3.40 4.95 -4.05 -0.02 3.38 16 18 N -0.73 -18.33 4.79 -59.91 -0.29 -18.62 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 26 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 27 C 0.11 1.86 5.94 -2.41 -0.01 1.84 16 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.34 6.77 -51.93 -0.35 0.99 16 31 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 33 H 0.14 1.10 6.44 -52.49 -0.34 0.76 16 34 H 0.07 0.61 7.64 -51.92 -0.40 0.21 16 35 H 0.08 0.72 6.47 -51.93 -0.34 0.38 16 36 H 0.06 0.63 6.89 -51.93 -0.36 0.27 16 37 H 0.06 0.52 6.69 -51.93 -0.35 0.17 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.59 6.71 -51.93 -0.35 0.24 16 40 H 0.07 1.21 6.74 -51.93 -0.35 0.86 16 41 H 0.06 0.83 6.84 -51.93 -0.36 0.48 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.38 10.04 5.99 -40.82 -0.24 9.80 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.10 2.13 6.91 -51.93 -0.36 1.77 16 47 H 0.07 0.99 7.83 -51.93 -0.41 0.59 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -34.01 367.75 -8.67 -42.68 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.10 Total: 7.26 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.95 Total: -0.88 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -0.22 Total: -62.10 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.01 -8.67 -42.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182421488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.004 kcal (2) G-P(sol) polarization free energy of solvation -34.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds