Wall clock time and date at job start Fri Apr 10 2020 23:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38361 * 119.46395 * 2 1 4 4 C 1.38350 * 119.30819 * 180.02562 * 3 2 1 5 5 C 1.40024 * 118.28688 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.56039 * 180.02562 * 5 4 3 7 7 O 1.21551 * 119.99767 * 139.34264 * 6 5 4 8 8 N 1.34769 * 119.99747 * 319.34182 * 6 5 4 9 9 C 1.46936 * 120.60622 * 354.15275 * 8 6 5 10 10 C 1.53192 * 108.77121 * 233.57747 * 9 8 6 11 11 C 1.53042 * 109.33782 * 305.41352 * 10 9 8 12 12 H 1.09000 * 109.46171 * 301.32655 * 11 10 9 13 13 C 1.53002 * 109.46253 * 181.35595 * 11 10 9 14 14 N 1.46505 * 109.46780 * 64.99759 * 13 11 10 15 15 C 1.36943 * 119.99783 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00196 * 0.02562 * 15 14 13 17 17 C 1.38808 * 119.99851 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00550 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99873 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46971 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46890 * 120.00049 * 19 17 15 22 22 H 1.48502 * 109.47305 * 240.00304 * 19 17 15 23 23 C 1.53038 * 109.54063 * 61.34781 * 11 10 9 24 24 H 1.08999 * 109.49424 * 58.58807 * 23 11 10 25 25 C 1.52997 * 109.49972 * 178.68469 * 23 11 10 26 26 C 1.46927 * 120.63220 * 174.17241 * 8 6 5 27 27 C 1.39525 * 118.88111 * 0.27122 * 5 4 3 28 28 N 1.31692 * 120.56694 * 359.45562 * 27 5 4 29 29 H 1.08999 * 109.47214 * 89.99885 * 1 2 3 30 30 H 1.08997 * 109.47221 * 210.00498 * 1 2 3 31 31 H 1.09001 * 109.47002 * 330.00227 * 1 2 3 32 32 H 1.08005 * 120.34523 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.85826 * 180.02562 * 4 3 2 34 34 H 1.08993 * 109.56386 * 113.80944 * 9 8 6 35 35 H 1.09006 * 109.61738 * 353.37419 * 9 8 6 36 36 H 1.08997 * 109.49854 * 185.44459 * 10 9 8 37 37 H 1.09003 * 109.50369 * 65.37775 * 10 9 8 38 38 H 1.08996 * 109.47267 * 184.99698 * 13 11 10 39 39 H 1.09001 * 109.47113 * 305.00145 * 13 11 10 40 40 H 0.96996 * 120.00494 * 359.97438 * 14 13 11 41 41 H 0.96990 * 120.00773 * 179.97438 * 18 17 15 42 42 H 1.08997 * 109.47374 * 59.99521 * 25 23 11 43 43 H 1.08994 * 109.47419 * 180.02562 * 25 23 11 44 44 H 1.09003 * 109.47011 * 299.99829 * 25 23 11 45 45 H 1.09006 * 109.58281 * 6.60288 * 26 8 6 46 46 H 1.08996 * 109.70607 * 246.24959 * 26 8 6 47 47 H 1.08006 * 119.71622 * 179.72316 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1875 1.2047 0.0000 4 6 3.5710 1.2009 -0.0005 5 6 4.2312 -0.0339 -0.0005 6 6 5.7083 -0.0966 -0.0005 7 8 6.2816 -0.9202 0.6854 8 7 6.4190 0.7595 -0.7610 9 6 5.7417 1.6737 -1.6907 10 6 6.3458 1.4938 -3.0869 11 6 7.8626 1.6834 -3.0111 12 1 8.0853 2.6767 -2.6214 13 6 8.4651 1.5378 -4.4099 14 7 7.9808 2.6238 -5.2656 15 6 8.3881 2.7006 -6.5708 16 1 9.0659 1.9602 -6.9695 17 6 7.9288 3.7292 -7.3818 18 7 7.1024 4.6312 -6.8962 19 14 8.4849 3.8343 -9.1621 20 1 9.4072 2.7092 -9.4598 21 1 7.3017 3.7536 -10.0558 22 1 9.1874 5.1234 -9.3860 23 6 8.4650 0.6252 -2.0840 24 1 8.2216 -0.3686 -2.4598 25 6 9.9847 0.7951 -2.0346 26 6 7.8854 0.7958 -0.6763 27 6 3.4715 -1.2042 -0.0057 28 7 2.1558 -1.1487 0.0002 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6444 2.1382 -0.0004 33 1 4.1275 2.1265 -0.0001 34 1 5.8850 2.7024 -1.3604 35 1 4.6769 1.4423 -1.7208 36 1 5.9202 2.2330 -3.7655 37 1 6.1224 0.4920 -3.4538 38 1 9.5521 1.5843 -4.3439 39 1 8.1676 0.5795 -4.8357 40 1 7.3712 3.2881 -4.9080 41 1 6.7818 5.3502 -7.4628 42 1 10.2272 1.7886 -1.6576 43 1 10.4134 0.0410 -1.3747 44 1 10.3963 0.6765 -3.0369 45 1 8.2347 -0.0148 -0.0367 46 1 8.2061 1.7518 -0.2625 47 1 3.9668 -2.1640 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183888202.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:36:16 Heat of formation + Delta-G solvation = -15.376946 kcal Electronic energy + Delta-G solvation = -26657.128716 eV Core-core repulsion = 23031.834952 eV Total energy + Delta-G solvation = -3625.293763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.01017 -40.66924 -39.16320 -36.62957 -35.32114 -34.03127 -33.45768 -33.24292 -32.03576 -29.34242 -28.36863 -27.57174 -25.64598 -24.68440 -24.29265 -23.19573 -22.72461 -21.34824 -20.52406 -19.15922 -18.40714 -17.75245 -17.41111 -16.97978 -16.67594 -16.14777 -15.78455 -15.63483 -15.57004 -15.36427 -15.21488 -14.83889 -14.49341 -14.31759 -14.25682 -13.95346 -13.83130 -13.33197 -13.14970 -13.13342 -12.99027 -12.94517 -12.91912 -12.79324 -12.70535 -12.14569 -11.98922 -11.90081 -11.65282 -11.56591 -11.27833 -11.19901 -10.93447 -10.76448 -10.51253 -10.04427 -9.70069 -8.95681 -7.94481 -5.21704 -0.33801 0.16150 1.47552 1.48042 1.53070 1.57684 1.86352 2.56314 2.67805 3.15956 3.39171 3.41436 3.65766 3.69472 3.71738 3.79584 3.84283 3.95155 4.02572 4.21917 4.25082 4.33580 4.37935 4.50904 4.60301 4.65034 4.67088 4.70439 4.73056 4.77864 4.80403 4.83534 4.95026 4.97939 5.07017 5.09169 5.11139 5.15140 5.20566 5.27038 5.35018 5.46407 5.51484 5.57803 5.61497 6.22522 6.28971 6.85066 6.94541 7.35811 8.11781 8.36456 9.28951 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.003146 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.345271 B = 8896.695490 C =10476.533709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.135 3.865 3 C -0.170 4.170 4 C -0.039 4.039 5 C -0.202 4.202 6 C 0.566 3.434 7 O -0.574 6.574 8 N -0.598 5.598 9 C 0.106 3.894 10 C -0.121 4.121 11 C -0.078 4.078 12 H 0.075 0.925 13 C 0.156 3.844 14 N -0.741 5.741 15 C -0.244 4.244 16 H 0.070 0.930 17 C -0.071 4.071 18 N -0.965 5.965 19 Si 0.968 3.032 20 H -0.270 1.270 21 H -0.293 1.293 22 H -0.292 1.292 23 C -0.088 4.088 24 H 0.061 0.939 25 C -0.144 4.144 26 C 0.120 3.880 27 C 0.143 3.857 28 N -0.511 5.511 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.178 0.822 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.007 0.993 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -5.565 17.529 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.002 4.002 3 C -0.189 4.189 4 C -0.065 4.065 5 C -0.208 4.208 6 C 0.355 3.645 7 O -0.455 6.455 8 N -0.328 5.328 9 C -0.016 4.016 10 C -0.159 4.159 11 C -0.097 4.097 12 H 0.093 0.907 13 C 0.030 3.970 14 N -0.384 5.384 15 C -0.376 4.376 16 H 0.088 0.912 17 C -0.264 4.264 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.108 4.108 24 H 0.080 0.920 25 C -0.201 4.201 26 C -0.002 4.002 27 C -0.015 4.015 28 N -0.221 5.221 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.195 0.805 33 H 0.181 0.819 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.024 0.976 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.400 -6.828 17.741 21.207 hybrid contribution 0.772 0.933 -1.269 1.754 sum -8.628 -5.895 16.472 19.507 Atomic orbital electron populations 1.20897 0.86244 1.04854 1.04340 1.22190 0.98964 0.88237 0.90809 1.22333 0.94074 1.00644 1.01884 1.22145 0.95386 0.97261 0.91678 1.20825 0.93502 0.96685 1.09749 1.18375 0.87054 0.79902 0.79178 1.90750 1.72343 1.37969 1.44445 1.48090 1.07583 1.37483 1.39686 1.22197 0.97563 0.94068 0.87785 1.21829 0.95660 1.01831 0.96586 1.21224 0.94706 0.99400 0.94331 0.90699 1.20885 0.96381 0.89972 0.89774 1.42543 1.56270 1.30707 1.08882 1.19615 1.21510 1.07835 0.88596 0.91228 1.25464 1.00809 0.97975 1.02140 1.69783 1.38162 1.16931 1.36715 0.85154 0.77254 0.77310 0.80532 1.19479 1.22035 1.21940 1.21354 0.96542 0.98536 0.94348 0.92020 1.21797 0.93347 1.02649 1.02346 1.21757 0.77903 1.03631 0.96876 1.22860 0.89133 0.97855 0.91602 1.67637 1.09273 1.30583 1.14559 0.89048 0.90629 0.87800 0.80489 0.81859 0.88660 0.88308 0.91222 0.93053 0.95470 0.97551 0.79082 0.93981 0.91693 0.91240 0.92605 0.89520 0.89345 0.82522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.16 71.23 0.72 -0.38 16 2 C 0.14 2.33 6.78 42.57 0.29 2.62 16 3 C -0.17 -2.36 9.72 22.33 0.22 -2.14 16 4 C -0.04 -0.65 7.52 22.73 0.17 -0.48 16 5 C -0.20 -4.60 5.11 -19.99 -0.10 -4.70 16 6 C 0.57 15.01 7.34 86.79 0.64 15.64 16 7 O -0.57 -18.98 16.37 -3.87 -0.06 -19.05 16 8 N -0.60 -13.96 2.97 -822.30 -2.44 -16.40 16 9 C 0.11 2.23 4.94 86.36 0.43 2.66 16 10 C -0.12 -3.41 5.25 30.67 0.16 -3.25 16 11 C -0.08 -2.29 1.73 -10.77 -0.02 -2.31 16 12 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 13 C 0.16 6.04 5.41 86.38 0.47 6.51 16 14 N -0.74 -36.39 5.32 -343.44 -1.83 -38.22 16 15 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 16 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 17 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 18 N -0.97 -57.32 13.06 21.65 0.28 -57.03 16 19 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 C -0.09 -2.18 2.41 -10.72 -0.03 -2.20 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 C -0.14 -3.20 8.82 71.98 0.63 -2.56 16 26 C 0.12 2.71 5.73 86.36 0.49 3.21 16 27 C 0.14 3.46 10.82 85.02 0.92 4.38 16 28 N -0.51 -11.75 10.25 -182.81 -1.87 -13.63 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.53 8.07 -2.39 -0.02 0.52 16 32 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.16 2.01 6.71 -2.91 -0.02 1.99 16 34 H 0.10 1.66 8.13 -2.39 -0.02 1.64 16 35 H 0.10 1.88 4.77 -2.38 -0.01 1.87 16 36 H 0.07 2.28 7.15 -2.39 -0.02 2.26 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.03 1.06 6.14 -2.39 -0.01 1.04 16 39 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.38 19.23 6.85 -92.71 -0.63 18.60 16 41 H 0.25 14.45 8.31 -92.72 -0.77 13.68 16 42 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.39 6.29 -2.39 -0.02 1.38 16 45 H 0.09 2.11 7.00 -2.38 -0.02 2.09 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -70.79 372.73 2.74 -68.05 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.34 Total: 27.81 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.30 Total: 0.83 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.86 Total: -125.28 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.06 Total: -19.05 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.79 2.74 -68.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183888202.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.677 kcal (2) G-P(sol) polarization free energy of solvation -70.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds