Wall clock time and date at job start Fri Apr 10 2020 23:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31699 * 119.71513 * 2 1 4 4 C 1.31923 * 121.87812 * 179.70550 * 3 2 1 5 5 C 1.38356 * 121.07857 * 0.56992 * 4 3 2 6 6 C 1.38361 * 119.30182 * 359.72646 * 5 4 3 7 7 C 1.39515 * 119.71592 * 180.27439 * 2 1 3 8 8 C 1.47839 * 120.56288 * 359.97438 * 7 2 1 9 9 O 1.21555 * 119.99863 * 305.10161 * 8 7 2 10 10 N 1.34776 * 120.00006 * 125.09781 * 8 7 2 11 11 C 1.46920 * 120.63152 * 3.99064 * 10 8 7 12 12 C 1.52763 * 109.01034 * 233.58835 * 11 10 8 13 13 C 1.53047 * 109.37931 * 305.58473 * 12 11 10 14 14 H 1.08993 * 109.45288 * 301.22608 * 13 12 11 15 15 C 1.53003 * 109.45494 * 181.26106 * 13 12 11 16 16 N 1.46492 * 109.47036 * 64.93752 * 15 13 12 17 17 C 1.36945 * 119.99950 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99585 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00263 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99732 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00169 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47244 * 59.99541 * 21 19 17 23 23 H 1.48494 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46937 * 299.99739 * 21 19 17 25 25 C 1.53042 * 109.53647 * 61.24335 * 13 12 11 26 26 H 1.08999 * 109.52427 * 178.66470 * 25 13 12 27 27 C 1.53000 * 109.49780 * 58.58263 * 25 13 12 28 28 C 1.46924 * 120.63058 * 184.27464 * 10 8 7 29 29 H 1.09001 * 109.47392 * 264.67321 * 1 2 3 30 30 H 1.09003 * 109.47034 * 24.67486 * 1 2 3 31 31 H 1.09001 * 109.47096 * 144.67283 * 1 2 3 32 32 H 1.07995 * 119.46268 * 180.29411 * 4 3 2 33 33 H 1.07998 * 120.34751 * 179.74328 * 5 4 3 34 34 H 1.08003 * 120.85185 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.58893 * 353.42209 * 11 10 8 36 36 H 1.08996 * 109.58810 * 113.84344 * 11 10 8 37 37 H 1.08999 * 109.56102 * 185.55478 * 12 11 10 38 38 H 1.08996 * 109.39231 * 65.51461 * 12 11 10 39 39 H 1.09001 * 109.46535 * 184.93293 * 15 13 12 40 40 H 1.09000 * 109.47175 * 304.93206 * 15 13 12 41 41 H 0.96999 * 120.00814 * 359.97438 * 16 15 13 42 42 H 0.97005 * 119.99874 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47326 * 300.16560 * 27 25 13 44 44 H 1.09005 * 109.47402 * 60.15885 * 27 25 13 45 45 H 1.09004 * 109.47300 * 180.16280 * 27 25 13 46 46 H 1.08999 * 109.58694 * 246.15735 * 28 10 8 47 47 H 1.09009 * 109.58902 * 6.43743 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 0.0058 5 6 4.2366 0.0365 0.0003 6 6 3.5987 -1.1913 -0.0056 7 6 2.1986 -1.2117 -0.0058 8 6 1.4656 -2.4956 -0.0114 9 8 0.6390 -2.7272 0.8491 10 7 1.7140 -3.4091 -0.9706 11 6 2.7706 -3.1814 -1.9657 12 6 2.1777 -3.3355 -3.3652 13 6 1.4905 -4.6983 -3.4783 14 1 2.2155 -5.4879 -3.2814 15 6 0.9233 -4.8674 -4.8892 16 7 2.0230 -4.9048 -5.8563 17 6 1.7559 -5.0511 -7.1915 18 1 0.7346 -5.1394 -7.5314 19 6 2.7979 -5.0861 -8.1080 20 7 4.0426 -4.9790 -7.6937 21 14 2.4336 -5.2850 -9.9293 22 1 1.5873 -4.1555 -10.3911 23 1 3.7081 -5.2916 -10.6912 24 1 1.7156 -6.5654 -10.1535 25 6 0.3531 -4.7842 -2.4579 26 1 -0.1513 -5.7455 -2.5547 27 6 -0.6472 -3.6547 -2.7119 28 6 0.9291 -4.6489 -1.0448 29 1 -0.3634 -0.0954 1.0232 30 1 -0.3633 0.9339 -0.4290 31 1 -0.3633 -0.8384 -0.5942 32 1 3.9734 2.1533 0.0104 33 1 5.3152 0.0910 0.0009 34 1 4.1661 -2.1102 -0.0095 35 1 3.1715 -2.1746 -1.8491 36 1 3.5671 -3.9123 -1.8268 37 1 2.9725 -3.2661 -4.1079 38 1 1.4480 -2.5445 -3.5382 39 1 0.3589 -5.7982 -4.9447 40 1 0.2654 -4.0293 -5.1192 41 1 2.9403 -4.8259 -5.5511 42 1 4.7708 -5.0038 -8.3341 43 1 -0.1421 -2.6935 -2.6161 44 1 -1.0567 -3.7512 -3.7174 45 1 -1.4556 -3.7145 -1.9830 46 1 1.5723 -5.5021 -0.8292 47 1 0.1167 -4.6112 -0.3190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185030256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:36:48 Heat of formation + Delta-G solvation = -12.240292 kcal Electronic energy + Delta-G solvation = -27338.203014 eV Core-core repulsion = 23713.045266 eV Total energy + Delta-G solvation = -3625.157748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.09104 -40.68488 -39.14379 -36.59461 -35.08054 -34.00107 -33.68464 -32.87138 -31.99656 -29.04535 -28.50334 -27.80293 -25.85326 -25.00592 -24.19564 -23.32560 -22.80273 -21.29175 -19.71788 -19.04724 -18.41188 -17.86543 -17.27252 -17.09103 -16.75925 -16.37462 -15.85363 -15.47221 -15.40448 -15.30794 -15.30557 -14.76606 -14.54095 -14.39616 -14.24813 -13.93881 -13.67804 -13.58004 -13.43498 -13.23236 -13.04381 -12.96762 -12.78889 -12.69476 -12.48510 -12.23080 -12.04859 -11.90535 -11.58380 -11.44614 -11.25651 -11.19447 -10.90521 -10.74726 -10.45751 -9.99647 -9.67633 -8.95578 -7.93792 -5.21130 -0.22661 0.17324 1.48062 1.49569 1.50091 1.56205 1.91177 2.57077 2.69906 3.21108 3.37007 3.39774 3.65188 3.71213 3.75667 3.82653 3.88669 4.01614 4.09400 4.21229 4.30497 4.37579 4.42635 4.48331 4.53606 4.55397 4.62781 4.65095 4.70906 4.74794 4.81245 4.84821 4.97173 5.01977 5.04083 5.07476 5.07640 5.16572 5.17842 5.23434 5.30798 5.47913 5.52488 5.60264 5.62226 6.26093 6.29340 6.88830 6.98766 7.36175 8.12844 8.36881 9.29283 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016210 B = 0.003282 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.966649 B = 8528.958130 C = 9350.953101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.155 3.845 3 N -0.509 5.509 4 C 0.114 3.886 5 C -0.172 4.172 6 C -0.046 4.046 7 C -0.197 4.197 8 C 0.570 3.430 9 O -0.566 6.566 10 N -0.592 5.592 11 C 0.108 3.892 12 C -0.120 4.120 13 C -0.078 4.078 14 H 0.072 0.928 15 C 0.159 3.841 16 N -0.741 5.741 17 C -0.247 4.247 18 H 0.070 0.930 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.968 3.032 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.279 1.279 25 C -0.090 4.090 26 H 0.095 0.905 27 C -0.141 4.141 28 C 0.119 3.881 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.159 0.841 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.017 0.983 41 H 0.376 0.624 42 H 0.251 0.749 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.920 8.262 18.639 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.018 3.982 3 N -0.219 5.219 4 C -0.043 4.043 5 C -0.191 4.191 6 C -0.072 4.072 7 C -0.202 4.202 8 C 0.358 3.642 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.015 4.015 12 C -0.159 4.159 13 C -0.096 4.096 14 H 0.090 0.910 15 C 0.032 3.968 16 N -0.385 5.385 17 C -0.379 4.379 18 H 0.088 0.912 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.798 3.202 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.206 1.206 25 C -0.110 4.110 26 H 0.113 0.887 27 C -0.199 4.199 28 C -0.002 4.002 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.208 0.792 33 H 0.195 0.805 34 H 0.177 0.823 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.209 0.791 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.954 8.872 18.932 20.999 hybrid contribution 0.700 -0.928 -1.271 1.723 sum -1.254 7.943 17.661 19.405 Atomic orbital electron populations 1.20716 0.88274 1.03348 1.03499 1.21448 0.97548 0.87138 0.92096 1.67615 1.11633 1.28344 1.14282 1.23577 0.88646 1.00730 0.91323 1.22488 1.03583 0.91862 1.01186 1.22058 0.91901 1.00776 0.92489 1.20748 0.95950 0.94110 1.09388 1.18248 0.81680 0.83217 0.81048 1.90753 1.36247 1.79213 1.38346 1.48058 1.35832 1.19594 1.28872 1.21949 0.89453 1.03446 0.86609 1.21757 1.00445 0.97330 0.96322 1.21186 0.97311 0.97482 0.93662 0.90997 1.20835 0.90324 0.97139 0.88456 1.42538 1.04934 1.88239 1.02747 1.19566 0.92740 1.40665 0.84931 0.91176 1.25466 0.95179 1.03673 1.01962 1.69783 0.98398 1.59080 1.34376 0.85289 0.76335 0.78096 0.80515 1.20662 1.22006 1.20570 1.21421 0.95601 1.00523 0.93435 0.88674 1.21822 0.98491 0.98041 1.01509 1.21746 0.96077 0.85499 0.96927 0.89772 0.89605 0.91622 0.79222 0.80463 0.82299 0.88753 0.89156 0.91683 0.92402 0.96620 0.96504 0.79145 0.93995 0.93628 0.92788 0.92164 0.89675 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 9.17 71.24 0.65 -1.65 16 2 C 0.16 3.76 6.82 42.89 0.29 4.05 16 3 N -0.51 -11.51 10.26 -182.85 -1.88 -13.39 16 4 C 0.11 1.81 11.17 84.71 0.95 2.76 16 5 C -0.17 -2.26 10.10 22.33 0.23 -2.04 16 6 C -0.05 -0.78 7.60 22.73 0.17 -0.61 16 7 C -0.20 -4.51 4.86 -20.00 -0.10 -4.61 16 8 C 0.57 14.60 6.15 86.78 0.53 15.14 16 9 O -0.57 -17.67 15.66 -3.89 -0.06 -17.73 16 10 N -0.59 -13.48 2.42 -823.16 -1.99 -15.47 16 11 C 0.11 2.31 5.58 86.22 0.48 2.79 16 12 C -0.12 -3.37 4.89 30.53 0.15 -3.22 16 13 C -0.08 -2.25 1.96 -10.76 -0.02 -2.27 16 14 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.16 6.08 5.19 86.38 0.45 6.53 16 16 N -0.74 -36.45 5.32 -343.46 -1.83 -38.27 16 17 C -0.25 -13.65 9.99 84.03 0.84 -12.81 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 21 Si 0.97 45.57 29.55 68.60 2.03 47.59 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 C -0.09 -2.13 2.72 -10.72 -0.03 -2.16 16 26 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 27 C -0.14 -3.49 8.38 71.98 0.60 -2.88 16 28 C 0.12 2.60 5.82 86.36 0.50 3.11 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.58 7.17 -2.39 -0.02 1.56 16 32 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 34 H 0.16 2.01 7.50 -2.91 -0.02 1.99 16 35 H 0.09 1.86 4.78 -2.39 -0.01 1.85 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.15 7.15 -2.39 -0.02 2.14 16 38 H 0.06 1.73 6.33 -2.39 -0.02 1.71 16 39 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.02 0.67 6.74 -2.39 -0.02 0.66 16 41 H 0.38 19.30 6.84 -92.71 -0.63 18.67 16 42 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.04 1.20 5.97 -2.39 -0.01 1.19 16 44 H 0.05 1.42 6.59 -2.38 -0.02 1.40 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.09 2.07 7.03 -2.38 -0.02 2.05 16 Total: -1.00 -69.85 366.98 3.07 -66.78 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.35 Total: 29.13 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.17 Total: -1.37 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.41 Total: -124.41 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.06 Total: -17.73 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.85 3.07 -66.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185030256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.543 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds