Wall clock time and date at job start Fri Apr 10 2020 23:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38166 * 119.55380 * 2 1 4 4 C 1.39802 * 119.00012 * 180.02562 * 3 2 1 5 5 C 1.48148 * 120.92030 * 179.97438 * 4 3 2 6 6 O 1.21514 * 119.99997 * 324.92683 * 5 4 3 7 7 N 1.34777 * 120.00041 * 144.93107 * 5 4 3 8 8 C 1.46933 * 120.62945 * 354.28279 * 7 5 4 9 9 C 1.53188 * 108.77468 * 233.63463 * 8 7 5 10 10 C 1.53039 * 109.33855 * 305.34555 * 9 8 7 11 11 H 1.09006 * 109.46267 * 301.36519 * 10 9 8 12 12 C 1.52998 * 109.46174 * 181.40318 * 10 9 8 13 13 N 1.46508 * 109.46730 * 65.00190 * 12 10 9 14 14 C 1.36936 * 119.99527 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00822 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99577 * 179.97438 * 14 13 12 17 17 N 1.31611 * 120.00080 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99866 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47187 * 90.00078 * 18 16 14 20 20 H 1.48496 * 109.46980 * 210.00517 * 18 16 14 21 21 H 1.48510 * 109.47211 * 330.00224 * 18 16 14 22 22 C 1.53112 * 109.50051 * 61.35134 * 10 9 8 23 23 H 1.08995 * 109.51456 * 58.63149 * 22 10 9 24 24 C 1.53003 * 109.48437 * 178.69798 * 22 10 9 25 25 C 1.46924 * 120.63438 * 174.30759 * 7 5 4 26 26 C 1.39834 * 118.15133 * 0.24468 * 4 3 2 27 27 C 1.38128 * 119.00657 * 359.48232 * 26 4 3 28 28 N 1.31801 * 119.54943 * 179.97438 * 2 1 3 29 29 H 1.09009 * 109.46882 * 90.00400 * 1 2 3 30 30 H 1.09002 * 109.47685 * 210.00195 * 1 2 3 31 31 H 1.09005 * 109.47430 * 330.00722 * 1 2 3 32 32 H 1.08001 * 120.50122 * 359.97233 * 3 2 1 33 33 H 1.09003 * 109.58197 * 113.84094 * 8 7 5 34 34 H 1.09001 * 109.69996 * 353.49129 * 8 7 5 35 35 H 1.08994 * 109.49674 * 65.31629 * 9 8 7 36 36 H 1.09007 * 109.49327 * 185.38289 * 9 8 7 37 37 H 1.08999 * 109.47154 * 185.00051 * 12 10 9 38 38 H 1.08998 * 109.47381 * 305.00793 * 12 10 9 39 39 H 0.96992 * 120.00215 * 0.02562 * 13 12 10 40 40 H 0.97001 * 120.00107 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.46839 * 179.85679 * 24 22 10 42 42 H 1.08998 * 109.47127 * 299.85435 * 24 22 10 43 43 H 1.08998 * 109.47447 * 59.85831 * 24 22 10 44 44 H 1.09001 * 109.59010 * 246.15894 * 25 7 5 45 45 H 1.09004 * 109.58042 * 6.58313 * 25 7 5 46 46 H 1.08002 * 120.49659 * 179.73276 * 26 4 3 47 47 H 1.07992 * 119.55434 * 180.26916 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3599 2.4519 -0.0011 6 8 3.9424 3.4196 -0.6059 7 7 5.5268 2.5280 0.6690 8 6 5.9836 1.4102 1.5061 9 6 6.2868 1.9385 2.9116 10 6 7.2818 3.0972 2.8138 11 1 8.1944 2.7522 2.3277 12 6 7.6134 3.6043 4.2187 13 7 8.3127 2.5547 4.9643 14 6 8.7124 2.7816 6.2542 15 1 8.5120 3.7341 6.7221 16 6 9.3745 1.7869 6.9608 17 7 9.6184 0.6260 6.3908 18 14 9.9192 2.0962 8.7206 19 1 8.8361 1.6917 9.6524 20 1 11.1410 1.3023 9.0073 21 1 10.2138 3.5405 8.9011 22 6 6.6648 4.2328 1.9929 23 1 5.7393 4.5622 2.4650 24 6 7.6471 5.4038 1.9227 25 6 6.3660 3.7305 0.5769 26 6 4.2342 -0.0508 -0.0063 27 6 3.4740 -1.2041 -0.0003 28 7 2.1570 -1.1466 0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8901 0.5137 32 1 1.6494 2.1377 -0.0004 33 1 6.8866 0.9768 1.0758 34 1 5.2042 0.6502 1.5616 35 1 5.3647 2.2890 3.3753 36 1 6.7170 1.1396 3.5156 37 1 8.2517 4.4849 4.1459 38 1 6.6913 3.8657 4.7378 39 1 8.4931 1.6993 4.5440 40 1 10.0807 -0.0692 6.8846 41 1 7.2086 6.2111 1.3361 42 1 7.8594 5.7609 2.9304 43 1 8.5729 5.0738 1.4515 44 1 7.3001 3.4864 0.0710 45 1 5.8370 4.5033 0.0191 46 1 5.3129 -0.1054 -0.0113 47 1 3.9651 -2.1658 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185327954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:02 Heat of formation + Delta-G solvation = 9.378740 kcal Electronic energy + Delta-G solvation = -26688.362953 eV Core-core repulsion = 23064.142677 eV Total energy + Delta-G solvation = -3624.220276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.15068 -39.75693 -38.04039 -35.20168 -34.06753 -33.02787 -32.61437 -31.96956 -30.36628 -28.06396 -27.12772 -26.93269 -24.51795 -23.66029 -23.07645 -22.28182 -21.34697 -20.12430 -19.36976 -17.63734 -17.09377 -16.77781 -16.31154 -16.07896 -15.34893 -15.05064 -14.88155 -14.63962 -14.44563 -14.05288 -13.91200 -13.63384 -13.52984 -13.34775 -12.96833 -12.79811 -12.60906 -12.56308 -12.46849 -12.03798 -11.93437 -11.80206 -11.64776 -11.02663 -10.94125 -10.84288 -10.48078 -10.43182 -10.33913 -10.23572 -10.05212 -9.98995 -9.66122 -9.61791 -9.18643 -8.88846 -8.71816 -6.93134 -5.79391 -3.07219 0.52749 0.77460 2.52720 2.76712 3.41667 3.47162 3.48253 3.48460 3.97329 4.07866 4.43990 4.56212 4.61872 4.72068 4.77294 4.88047 4.90156 5.04429 5.10716 5.16841 5.24720 5.28942 5.37830 5.39704 5.44519 5.54875 5.59121 5.64304 5.71919 5.73789 5.74789 5.80717 5.85951 5.93473 6.03034 6.17052 6.24459 6.28208 6.31636 6.39641 6.45649 6.57724 6.79736 6.89581 7.18732 7.64439 7.68110 7.89032 8.40087 9.51341 10.09283 10.43930 11.43624 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.003074 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.438343 B = 9106.713511 C =10384.191892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.124 3.876 3 C -0.121 4.121 4 C -0.077 4.077 5 C 0.559 3.441 6 O -0.536 6.536 7 N -0.597 5.597 8 C 0.090 3.910 9 C -0.126 4.126 10 C -0.089 4.089 11 H 0.073 0.927 12 C 0.156 3.844 13 N -0.732 5.732 14 C -0.238 4.238 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.097 4.097 23 H 0.073 0.927 24 C -0.147 4.147 25 C 0.118 3.882 26 C -0.153 4.153 27 C 0.102 3.898 28 N -0.473 5.473 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.016 0.984 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.148 0.852 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 0.083 -15.944 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.141 4.141 4 C -0.088 4.088 5 C 0.347 3.653 6 O -0.414 6.414 7 N -0.329 5.329 8 C -0.032 4.032 9 C -0.164 4.164 10 C -0.108 4.108 11 H 0.091 0.909 12 C 0.029 3.971 13 N -0.376 5.376 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.117 4.117 23 H 0.092 0.908 24 C -0.204 4.204 25 C -0.004 4.004 26 C -0.173 4.173 27 C -0.054 4.054 28 N -0.183 5.183 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.042 0.958 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.166 0.834 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.633 -0.074 -16.102 21.098 hybrid contribution 1.089 0.527 0.999 1.569 sum -12.544 0.453 -15.103 19.638 Atomic orbital electron populations 1.20738 0.88292 1.03797 1.03308 1.21299 0.97327 0.87789 0.94913 1.22046 0.93044 1.00038 0.98995 1.20321 0.94461 0.93793 1.00182 1.18244 0.80588 0.87164 0.79345 1.90768 1.68712 1.37308 1.44583 1.48040 1.20330 1.18272 1.46265 1.22395 1.00529 0.88662 0.91608 1.21947 0.99980 0.99656 0.94812 1.21362 0.97908 0.94290 0.97236 0.90885 1.20750 0.94973 0.92332 0.89039 1.42370 1.68516 1.14072 1.12649 1.19225 1.29796 0.98595 0.89295 0.91298 1.24717 1.01630 0.96189 0.98449 1.69643 1.47232 1.04675 1.36763 0.86205 0.77905 0.77245 0.84940 1.21751 1.21775 1.20805 1.21474 0.99587 0.95980 0.94667 0.90847 1.21829 0.98773 0.97039 1.02806 1.21778 0.94172 0.86788 0.97688 1.22566 1.02225 0.92396 1.00133 1.22770 0.89111 0.98484 0.95069 1.67404 1.10341 1.29405 1.11137 0.90192 0.90167 0.90452 0.83912 0.90668 0.88898 0.91776 0.89073 0.95754 0.96595 0.78334 0.93544 0.92955 0.91238 0.92453 0.91116 0.89043 0.83435 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.12 1.28 6.78 -82.63 -0.56 0.71 16 3 C -0.12 -1.32 9.35 -39.02 -0.37 -1.68 16 4 C -0.08 -0.89 5.31 -104.65 -0.56 -1.45 16 5 C 0.56 7.52 7.43 -12.19 -0.09 7.43 16 6 O -0.54 -8.71 16.31 5.35 0.09 -8.62 16 7 N -0.60 -7.33 2.97 -173.77 -0.52 -7.85 16 8 C 0.09 1.02 4.83 -3.71 -0.02 1.00 16 9 C -0.13 -1.79 5.25 -26.61 -0.14 -1.93 16 10 C -0.09 -1.33 1.73 -90.54 -0.16 -1.49 16 11 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 12 C 0.16 3.01 5.41 -4.04 -0.02 2.99 16 13 N -0.73 -17.82 5.32 -59.90 -0.32 -18.14 16 14 C -0.24 -6.54 9.99 -15.06 -0.15 -6.70 16 15 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 18 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.10 -1.24 2.42 -90.46 -0.22 -1.46 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 25 C 0.12 1.41 5.73 -3.71 -0.02 1.39 16 26 C -0.15 -1.48 7.48 -39.03 -0.29 -1.77 16 27 C 0.10 0.97 11.17 -17.60 -0.20 0.77 16 28 N -0.47 -5.21 10.25 -9.53 -0.10 -5.31 16 29 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.14 1.44 8.05 -52.49 -0.42 1.02 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.09 0.97 4.46 -51.93 -0.23 0.73 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 37 H 0.02 0.48 6.15 -51.93 -0.32 0.16 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.38 9.66 6.85 -40.82 -0.28 9.38 16 40 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.15 7.00 -51.93 -0.36 0.79 16 46 H 0.15 1.17 6.15 -52.49 -0.32 0.85 16 47 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -32.67 371.88 -8.98 -41.65 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.25 Total: 6.84 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -2.19 Total: -4.45 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.21 Total: -58.18 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.67 -8.98 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185327954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.026 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds