Wall clock time and date at job start Fri Apr 10 2020 23:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48503 * 109.47117 * 270.00281 * 3 2 1 5 5 H 1.48499 * 109.47276 * 30.00412 * 3 2 1 6 6 H 1.48504 * 109.47043 * 150.00447 * 3 2 1 7 7 C 1.37883 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99746 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00167 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47261 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.46847 * 124.36498 * 269.99744 * 11 10 9 13 13 C 1.54640 * 105.50103 * 163.14457 * 12 11 10 14 14 C 1.53899 * 101.59181 * 24.77354 * 13 12 11 15 15 C 1.53605 * 110.33127 * 216.22529 * 14 13 12 16 16 C 1.55308 * 102.79466 * 260.44443 * 15 14 13 17 17 C 1.54977 * 101.73987 * 324.96145 * 16 15 14 18 18 N 1.46649 * 110.87928 * 96.53758 * 14 13 12 19 19 C 1.46900 * 110.99899 * 244.27306 * 18 14 13 20 20 C 1.50702 * 109.47522 * 170.00187 * 19 18 14 21 21 C 1.40884 * 126.28947 * 89.99453 * 20 19 18 22 22 C 1.34854 * 107.41513 * 179.97438 * 21 20 19 23 23 N 1.36339 * 108.21638 * 0.02562 * 22 21 20 24 24 H 0.97003 * 125.63624 * 179.97438 * 23 22 21 25 25 C 1.34850 * 126.28860 * 269.97654 * 20 19 18 26 26 C 1.34655 * 124.36897 * 90.02449 * 11 10 9 27 27 O 1.21283 * 125.07623 * 0.83744 * 26 11 10 28 28 H 0.97002 * 119.99644 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47218 * 59.99768 * 9 7 2 30 30 H 1.09003 * 109.47257 * 300.00256 * 9 7 2 31 31 H 1.08999 * 109.47267 * 60.00246 * 10 9 7 32 32 H 1.09001 * 109.47265 * 299.99472 * 10 9 7 33 33 H 1.08994 * 110.24297 * 282.15392 * 12 11 10 34 34 H 1.08999 * 110.24117 * 44.14299 * 12 11 10 35 35 H 1.08998 * 111.00732 * 266.69433 * 13 12 11 36 36 H 1.09001 * 111.00359 * 142.84582 * 13 12 11 37 37 H 1.09003 * 110.74539 * 18.77472 * 15 14 13 38 38 H 1.08998 * 110.74285 * 142.11552 * 15 14 13 39 39 H 1.08995 * 110.97704 * 83.07811 * 16 15 14 40 40 H 1.09007 * 110.96649 * 206.81635 * 16 15 14 41 41 H 1.09003 * 110.37025 * 277.83450 * 17 16 15 42 42 H 1.09004 * 110.36593 * 155.50123 * 17 16 15 43 43 H 1.09000 * 109.47582 * 49.99925 * 19 18 14 44 44 H 1.09004 * 109.47014 * 290.00080 * 19 18 14 45 45 H 1.07998 * 126.29455 * 359.96439 * 21 20 19 46 46 H 1.08006 * 125.89018 * 179.74251 * 22 21 20 47 47 H 1.08001 * 125.89235 * 0.04254 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5114 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0023 11 7 5.4864 -2.6368 -0.0022 12 6 6.3153 -2.6359 -1.2144 13 6 7.7258 -2.2042 -0.7501 14 6 7.7035 -2.6175 0.7322 15 6 8.4774 -1.5986 1.5820 16 6 9.8541 -2.2900 1.7789 17 6 9.4467 -3.7821 1.8754 18 7 8.3272 -3.9317 0.9178 19 6 7.3489 -4.9152 1.4012 20 6 7.9539 -6.2943 1.3466 21 6 8.6807 -6.9273 2.3742 22 6 9.0419 -8.1453 1.9218 23 7 8.5652 -8.2871 0.6524 24 1 8.6809 -9.0683 0.0892 25 6 7.8989 -7.1494 0.3053 26 6 6.2465 -2.6382 1.1093 27 8 5.8207 -2.6541 2.2448 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6806 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.6577 -3.1499 -0.8925 32 1 3.6584 -3.1511 0.8875 33 1 6.3504 -3.6353 -1.6480 34 1 5.9225 -1.9231 -1.9394 35 1 7.8587 -1.1273 -0.8535 36 1 8.4992 -2.7457 -1.2950 37 1 8.5916 -0.6563 1.0461 38 1 7.9836 -1.4413 2.5409 39 1 10.5036 -2.1176 0.9207 40 1 10.3308 -1.9547 2.7001 41 1 9.1157 -4.0204 2.8862 42 1 10.2805 -4.4224 1.5873 43 1 6.4599 -4.8833 0.7713 44 1 7.0742 -4.6793 2.4293 45 1 8.9071 -6.5132 3.3456 46 1 9.6144 -8.8798 2.4690 47 1 7.4115 -6.9646 -0.6406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272644369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:07 Heat of formation + Delta-G solvation = 27.767774 kcal Electronic energy + Delta-G solvation = -27583.329936 eV Core-core repulsion = 23959.907068 eV Total energy + Delta-G solvation = -3623.422868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.40839 -40.81272 -37.62114 -36.04742 -33.71843 -33.21784 -31.82050 -30.44335 -29.42109 -28.92981 -27.85414 -25.28133 -25.12903 -23.26156 -21.66229 -21.46686 -20.64833 -20.18747 -19.42427 -18.59232 -17.98453 -16.97477 -16.53005 -15.83759 -15.49602 -15.11560 -14.56769 -14.21203 -14.06394 -13.89171 -13.79327 -13.69438 -13.44441 -13.17200 -12.94800 -12.88458 -12.65838 -12.43098 -12.26884 -12.13171 -11.80916 -11.64998 -11.47054 -11.23318 -11.02844 -10.96163 -10.79722 -10.59896 -10.43792 -10.02072 -9.89804 -9.53793 -9.24289 -8.83889 -8.55034 -8.33549 -8.15006 -8.07512 -6.05846 -4.04634 2.20712 2.73718 2.97229 3.25370 3.30181 3.38402 3.44494 3.46636 4.11551 4.35573 4.45145 4.52175 4.67564 4.92356 5.02023 5.05415 5.10981 5.16612 5.24085 5.28552 5.32759 5.40790 5.47239 5.66823 5.72538 5.75863 5.79455 5.85156 5.88443 5.94341 5.95866 6.03770 6.04654 6.09031 6.18280 6.32012 6.34213 6.61482 6.84791 6.87205 6.96025 7.00410 7.09474 7.17640 7.36620 7.49020 7.64659 7.76247 8.47909 8.58228 8.97355 9.56243 11.07295 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018050 B = 0.003547 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.853177 B = 7892.053807 C = 8714.106554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.023 4.023 10 C 0.136 3.864 11 N -0.612 5.612 12 C 0.101 3.899 13 C -0.114 4.114 14 C 0.064 3.936 15 C -0.124 4.124 16 C -0.127 4.127 17 C 0.048 3.952 18 N -0.490 5.490 19 C 0.112 3.888 20 C -0.152 4.152 21 C -0.190 4.190 22 C -0.022 4.022 23 N -0.563 5.563 24 H 0.412 0.588 25 C 0.004 3.996 26 C 0.510 3.490 27 O -0.529 6.529 28 H 0.264 0.736 29 H 0.020 0.980 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.130 0.870 46 H 0.160 0.840 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.140 -12.890 -1.316 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.062 4.062 10 C 0.016 3.984 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.153 4.153 14 C -0.029 4.029 15 C -0.163 4.163 16 C -0.165 4.165 17 C -0.080 4.080 18 N -0.215 5.215 19 C -0.016 4.016 20 C -0.159 4.159 21 C -0.215 4.215 22 C -0.153 4.153 23 N -0.158 5.158 24 H 0.248 0.752 25 C -0.128 4.128 26 C 0.295 3.705 27 O -0.405 6.405 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.148 0.852 46 H 0.177 0.823 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 23.832 -13.098 -1.283 27.224 hybrid contribution -0.064 0.843 0.411 0.940 sum 23.768 -12.255 -0.872 26.756 Atomic orbital electron populations 1.69906 1.06261 1.26962 1.50852 1.24974 0.94711 0.99124 0.94372 0.86776 0.80514 0.83614 0.78425 1.20265 1.21272 1.19041 1.20967 0.88921 0.94699 1.51328 0.90814 1.19880 0.97269 0.92305 0.96697 1.21578 0.74513 1.00136 1.02167 1.48664 1.07521 1.71833 1.06460 1.22095 0.90279 1.01639 0.88198 1.22633 0.97036 1.01545 0.94056 1.22024 0.92325 0.91403 0.97179 1.22708 0.95313 0.97656 1.00641 1.22745 0.96709 0.94892 1.02125 1.23105 0.94118 0.96152 0.94603 1.63802 1.08683 1.03990 1.44980 1.20707 0.93334 0.87732 0.99824 1.19241 1.05756 0.96056 0.94871 1.20819 1.05340 0.95274 1.00091 1.21751 1.06724 1.00067 0.86740 1.41949 1.44233 1.15685 1.13908 0.75191 1.21649 1.03448 0.87232 1.00452 1.20681 0.88691 0.76065 0.85026 1.90708 1.78400 1.50495 1.20899 0.92657 0.96200 0.96930 0.90996 0.90635 0.91301 0.90322 0.90066 0.88491 0.90212 0.90176 0.90646 0.90797 0.93266 0.90048 0.90430 0.92730 0.85194 0.82300 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 9 C -0.02 -0.57 4.36 -27.89 -0.12 -0.69 16 10 C 0.14 2.81 5.88 -4.04 -0.02 2.79 16 11 N -0.61 -10.76 2.78 -172.51 -0.48 -11.24 16 12 C 0.10 1.34 7.36 -2.99 -0.02 1.31 16 13 C -0.11 -1.31 6.42 -25.40 -0.16 -1.48 16 14 C 0.06 0.88 0.99 -132.20 -0.13 0.75 16 15 C -0.12 -1.56 6.05 -25.19 -0.15 -1.72 16 16 C -0.13 -1.25 7.08 -24.46 -0.17 -1.43 16 17 C 0.05 0.53 5.94 -2.13 -0.01 0.52 16 18 N -0.49 -6.21 4.79 -218.84 -1.05 -7.26 16 19 C 0.11 1.58 4.22 -4.97 -0.02 1.56 16 20 C -0.15 -1.88 5.23 -104.82 -0.55 -2.43 16 21 C -0.19 -2.12 10.48 -39.78 -0.42 -2.54 16 22 C -0.02 -0.20 11.94 -16.75 -0.20 -0.40 16 23 N -0.56 -4.58 6.07 -12.85 -0.08 -4.66 16 24 H 0.41 2.00 8.96 -40.82 -0.37 1.63 16 25 C 0.00 0.04 11.85 -16.75 -0.20 -0.16 16 26 C 0.51 9.26 4.46 -11.13 -0.05 9.21 16 27 O -0.53 -11.68 16.06 5.55 0.09 -11.59 16 28 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 29 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 30 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 1.68 7.93 -51.93 -0.41 1.27 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.87 7.45 -51.93 -0.39 0.48 16 36 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.08 0.90 7.39 -51.93 -0.38 0.51 16 38 H 0.08 1.18 7.51 -51.93 -0.39 0.79 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.59 7.62 -51.93 -0.40 0.20 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.21 6.79 -51.93 -0.35 0.86 16 44 H 0.05 0.91 6.92 -51.93 -0.36 0.55 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 47 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -34.96 372.02 -10.09 -45.05 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.62 Total: 1.88 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.66 Total: -8.10 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.83 Total: -50.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.96 -10.09 -45.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272644369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.822 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds