Wall clock time and date at job start Fri Apr 10 2020 23:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48497 * 109.47287 * 270.00008 * 3 2 1 5 5 H 1.48495 * 109.47083 * 30.00608 * 3 2 1 6 6 H 1.48505 * 109.46993 * 150.00369 * 3 2 1 7 7 C 1.37877 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99797 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00189 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47057 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47008 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99683 * 180.27761 * 11 10 9 13 13 O 1.21280 * 119.99935 * 359.72292 * 12 11 10 14 14 C 1.50699 * 119.99444 * 179.72613 * 12 11 10 15 15 H 1.09002 * 109.46372 * 328.99690 * 14 12 11 16 16 C 1.53033 * 109.46593 * 88.98567 * 14 12 11 17 17 C 1.53118 * 109.27930 * 179.19690 * 16 14 12 18 18 C 1.53124 * 109.15683 * 302.33775 * 17 16 14 19 19 C 1.53039 * 109.27778 * 57.65774 * 18 17 16 20 20 N 1.46847 * 109.45934 * 209.02771 * 14 12 11 21 21 C 1.46896 * 111.00555 * 54.14073 * 20 14 12 22 22 C 1.50701 * 109.47816 * 175.91230 * 21 20 14 23 23 C 1.38652 * 120.79058 * 269.72556 * 22 21 20 24 24 C 1.38198 * 119.16216 * 179.75157 * 23 22 21 25 25 N 1.31872 * 120.76561 * 0.53001 * 24 23 22 26 26 C 1.31879 * 121.72423 * 359.73975 * 25 24 23 27 27 C 1.38203 * 120.76026 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99991 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46992 * 59.99686 * 9 7 2 30 30 H 1.08994 * 109.47239 * 299.99368 * 9 7 2 31 31 H 1.08996 * 109.47234 * 60.00131 * 10 9 7 32 32 H 1.09000 * 109.47388 * 299.99545 * 10 9 7 33 33 H 0.96997 * 120.00151 * 0.02562 * 11 10 9 34 34 H 1.08998 * 109.50153 * 299.13021 * 16 14 12 35 35 H 1.08993 * 109.50771 * 59.20637 * 16 14 12 36 36 H 1.08995 * 109.52953 * 62.24513 * 17 16 14 37 37 H 1.08996 * 109.52311 * 182.37846 * 17 16 14 38 38 H 1.09004 * 109.50509 * 177.59718 * 18 17 16 39 39 H 1.08990 * 109.50619 * 297.67740 * 18 17 16 40 40 H 1.09003 * 109.46192 * 60.83726 * 19 18 17 41 41 H 1.09000 * 109.46393 * 180.80992 * 19 18 17 42 42 H 1.09001 * 109.47325 * 295.91754 * 21 20 14 43 43 H 1.09007 * 109.46853 * 55.91369 * 21 20 14 44 44 H 1.08007 * 120.41527 * 359.97438 * 23 22 21 45 45 H 1.07998 * 119.62013 * 180.29097 * 24 23 22 46 46 H 1.07993 * 119.61715 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.41406 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4866 -2.6366 -0.0009 12 6 6.1604 -3.8039 -0.0065 13 8 5.5539 -4.8541 -0.0064 14 6 7.6674 -3.8038 -0.0127 15 1 8.0284 -2.9216 -0.5414 16 6 8.1833 -3.7817 1.4279 17 6 9.7143 -3.8019 1.4170 18 6 10.1950 -5.0458 0.6644 19 6 9.6208 -5.0314 -0.7541 20 7 8.1538 -5.0128 -0.6894 21 6 7.5663 -5.1385 -2.0299 22 6 8.1631 -6.3320 -2.7302 23 6 9.3038 -6.2016 -3.5077 24 6 9.8254 -7.3194 -4.1307 25 7 9.2454 -8.4965 -4.0008 26 6 8.1566 -8.6567 -3.2740 27 6 7.5815 -7.5854 -2.6170 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6804 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.6579 -3.1506 -0.8907 32 1 3.6586 -3.1502 0.8893 33 1 5.9716 -1.7966 -0.0006 34 1 7.8349 -2.8765 1.9253 35 1 7.8109 -4.6561 1.9613 36 1 10.0869 -2.9075 0.9179 37 1 10.0855 -3.8289 2.4414 38 1 11.2840 -5.0438 0.6162 39 1 9.8555 -5.9405 1.1859 40 1 9.9725 -4.1433 -1.2793 41 1 9.9495 -5.9230 -1.2881 42 1 6.4878 -5.2700 -1.9430 43 1 7.7772 -4.2368 -2.6050 44 1 9.7806 -5.2392 -3.6219 45 1 10.7164 -7.2272 -4.7341 46 1 7.7099 -9.6363 -3.1906 47 1 6.6901 -7.7230 -2.0229 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325271610.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:31 Heat of formation + Delta-G solvation = -29.221012 kcal Electronic energy + Delta-G solvation = -26536.717421 eV Core-core repulsion = 22910.823334 eV Total energy + Delta-G solvation = -3625.894087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 4.54 seconds Orbital eigenvalues (eV) -41.71595 -40.87994 -39.08290 -36.62243 -35.65259 -34.78601 -33.02129 -32.51385 -32.14230 -31.43813 -28.11022 -27.02741 -24.83127 -24.68657 -24.20580 -22.66166 -22.40080 -21.55323 -20.62486 -19.01833 -18.32435 -17.65058 -17.36728 -17.23566 -16.64128 -16.42622 -16.26431 -16.14889 -15.56166 -15.28286 -15.24146 -15.06156 -14.83330 -14.61232 -14.50772 -14.24932 -14.00937 -13.76997 -13.36047 -13.28714 -13.09862 -12.99633 -12.43494 -12.38911 -12.18449 -12.15319 -11.86874 -11.76704 -11.62470 -11.52121 -11.37194 -10.79888 -10.76644 -10.50549 -10.44045 -10.06899 -10.05326 -9.33202 -8.31037 -6.38650 0.18149 0.22869 1.38270 1.41190 1.52365 1.59035 2.10791 2.36026 2.69429 3.04111 3.06096 3.49814 3.59798 3.69632 3.75531 3.84451 3.98173 4.06734 4.14065 4.19753 4.20857 4.26026 4.36659 4.38370 4.41020 4.54488 4.58672 4.71966 4.73406 4.76515 4.79066 4.88660 4.95778 5.02415 5.04517 5.13436 5.18223 5.25495 5.38365 5.39138 5.42001 5.46133 5.63329 5.75327 5.85404 6.03846 6.20928 6.61577 6.70788 7.01237 7.25794 7.28953 8.85890 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.002881 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.274435 B = 9717.183677 C =10754.374905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.027 0.973 9 C -0.011 4.011 10 C 0.147 3.853 11 N -0.716 5.716 12 C 0.507 3.493 13 O -0.570 6.570 14 C 0.081 3.919 15 H 0.086 0.914 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.053 3.947 20 N -0.525 5.525 21 C 0.088 3.912 22 C -0.039 4.039 23 C -0.162 4.162 24 C 0.091 3.909 25 N -0.510 5.510 26 C 0.091 3.909 27 C -0.163 4.163 28 H 0.268 0.732 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.156 0.844 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.964 -7.199 -3.225 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.049 4.049 10 C 0.023 3.977 11 N -0.368 5.368 12 C 0.293 3.707 13 O -0.448 6.448 14 C -0.031 4.031 15 H 0.104 0.896 16 C -0.144 4.144 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.074 4.074 20 N -0.251 5.251 21 C -0.039 4.039 22 C -0.047 4.047 23 C -0.182 4.182 24 C -0.065 4.065 25 N -0.219 5.219 26 C -0.065 4.065 27 C -0.184 4.184 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.174 0.826 45 H 0.199 0.801 46 H 0.188 0.812 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 28.577 -8.967 -3.360 30.139 hybrid contribution -1.063 2.075 0.022 2.331 sum 27.514 -6.892 -3.338 28.559 Atomic orbital electron populations 1.70084 1.08652 1.28456 1.51963 1.26107 0.95690 1.03948 0.93644 0.85529 0.79735 0.77219 0.79336 1.18996 1.21333 1.15735 1.21265 0.91697 0.93303 1.51597 0.95479 1.19635 0.94313 0.92883 0.98074 1.20986 0.78584 0.98359 0.99737 1.46123 1.07297 1.09084 1.74332 1.21108 0.90813 0.83265 0.75481 1.90674 1.71142 1.32715 1.50255 1.21635 0.89260 0.93349 0.98847 0.89611 1.21563 0.97711 1.02899 0.92196 1.21562 0.92882 0.98626 1.01846 1.21619 1.00862 0.98508 0.94439 1.22318 0.84880 1.01725 0.98452 1.61670 1.08525 1.37498 1.17388 1.21108 0.99498 0.94881 0.88378 1.20185 0.94787 0.94741 0.95035 1.22283 0.96174 1.01666 0.98050 1.23210 0.99372 0.87267 0.96669 1.67718 1.10059 1.27087 1.17081 1.23020 0.91667 0.99644 0.92203 1.22170 1.01792 0.93628 1.00777 0.92327 0.94401 0.94629 0.94024 0.94013 0.75086 0.89697 0.92562 0.90199 0.90095 0.89212 0.92637 0.92944 0.90388 0.91237 0.92570 0.82606 0.80057 0.81221 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.00 0.18 5.47 84.65 0.46 0.64 16 3 Si 0.96 41.63 27.47 68.60 1.88 43.51 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.23 -8.92 6.54 99.48 0.65 -8.26 16 7 C -0.54 -30.63 9.66 25.60 0.25 -30.38 16 8 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.49 4.16 29.85 0.12 -0.37 16 10 C 0.15 5.89 5.61 86.38 0.48 6.38 16 11 N -0.72 -21.42 5.56 -463.05 -2.57 -23.99 16 12 C 0.51 15.36 6.00 87.66 0.53 15.88 16 13 O -0.57 -22.58 15.15 -3.03 -0.05 -22.63 16 14 C 0.08 1.69 2.23 44.19 0.10 1.79 16 15 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 16 C -0.11 -1.89 5.36 30.64 0.16 -1.73 16 17 C -0.11 -1.35 6.00 30.68 0.18 -1.17 16 18 C -0.12 -1.53 6.09 30.65 0.19 -1.35 16 19 C 0.05 0.81 4.81 86.33 0.42 1.22 16 20 N -0.52 -11.31 4.36 -880.05 -3.83 -15.14 16 21 C 0.09 2.01 4.78 85.56 0.41 2.42 16 22 C -0.04 -0.81 4.39 -19.67 -0.09 -0.90 16 23 C -0.16 -2.53 7.91 22.36 0.18 -2.36 16 24 C 0.09 1.48 11.18 84.68 0.95 2.43 16 25 N -0.51 -10.77 10.36 -195.85 -2.03 -12.80 16 26 C 0.09 1.87 11.18 84.68 0.95 2.82 16 27 C -0.16 -3.67 9.82 22.36 0.22 -3.45 16 28 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 30 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 9.38 8.47 -92.71 -0.79 8.59 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 1.26 5.61 -2.39 -0.01 1.25 16 42 H 0.07 2.09 6.07 -2.39 -0.01 2.08 16 43 H 0.06 1.10 8.10 -2.38 -0.02 1.08 16 44 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 45 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 47 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -74.88 375.22 -0.68 -75.55 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.11 Total: 22.48 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 5.51 Total: -8.11 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -8.14 Total: -110.81 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.51 kcal Total: -74.88 -0.68 -75.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325271610.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.334 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.54 seconds