Wall clock time and date at job start Fri Apr 10 2020 23:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99750 * 3 2 1 6 6 H 1.48499 * 109.47152 * 59.99943 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47043 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46937 * 54.99834 * 11 10 9 13 13 N 1.46896 * 109.46960 * 295.00043 * 11 10 9 14 14 C 1.50701 * 109.47384 * 174.99893 * 11 10 9 15 15 O 1.21280 * 119.99781 * 99.99519 * 14 11 10 16 16 N 1.34771 * 119.99622 * 280.00195 * 14 11 10 17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 N 1.31696 * 119.49053 * 269.72456 * 18 17 16 20 20 C 1.31863 * 121.64908 * 179.75734 * 19 18 17 21 21 C 1.38099 * 120.58178 * 0.66521 * 20 19 18 22 22 C 1.39028 * 119.32550 * 359.71801 * 21 20 19 23 23 C 1.37886 * 118.49464 * 359.77127 * 22 21 20 24 24 C 1.50459 * 122.51824 * 180.68985 * 23 22 21 25 25 C 1.52790 * 110.47460 * 342.07637 * 24 23 22 26 26 C 1.53306 * 108.54315 * 51.07945 * 25 24 23 27 27 C 1.50340 * 118.70189 * 179.49940 * 22 21 20 28 28 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47114 * 60.00332 * 9 7 2 30 30 H 1.08996 * 109.47467 * 299.99802 * 9 7 2 31 31 H 1.08996 * 109.47568 * 60.00092 * 10 9 7 32 32 H 1.09004 * 109.47286 * 299.99929 * 10 9 7 33 33 H 1.00908 * 110.99936 * 299.99947 * 13 11 10 34 34 H 1.00903 * 111.00724 * 63.95270 * 13 11 10 35 35 H 0.96996 * 120.00772 * 359.97438 * 16 14 11 36 36 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 37 37 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 38 38 H 1.07999 * 119.70933 * 180.40081 * 20 19 18 39 39 H 1.07999 * 120.33642 * 179.69885 * 21 20 19 40 40 H 1.09003 * 109.30037 * 102.37537 * 24 23 22 41 41 H 1.09001 * 109.30707 * 221.75889 * 24 23 22 42 42 H 1.09000 * 109.62260 * 291.36509 * 25 24 23 43 43 H 1.09004 * 109.62562 * 170.80173 * 25 24 23 44 44 H 1.08997 * 109.63507 * 170.54059 * 26 25 24 45 45 H 1.09007 * 109.80107 * 50.03692 * 26 25 24 46 46 H 1.08997 * 109.30690 * 282.75225 * 27 22 21 47 47 H 1.08995 * 109.31240 * 42.16349 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 1 0.7893 -5.0071 -0.8414 13 7 0.7274 -5.1183 1.2556 14 6 2.4552 -6.1298 -0.1214 15 8 2.7860 -6.7531 0.8650 16 7 2.9594 -6.4590 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 6 4.3150 -7.7297 -2.8883 19 7 3.6222 -8.5289 -3.6729 20 6 3.9381 -8.6969 -4.9420 21 6 5.0249 -8.0428 -5.4881 22 6 5.7837 -7.1970 -4.6869 23 6 5.4175 -7.0373 -3.3672 24 6 6.1644 -6.1336 -2.4243 25 6 7.5521 -5.8132 -2.9777 26 6 7.3994 -5.3209 -4.4216 27 6 6.9705 -6.5009 -5.2929 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8714 -3.6039 0.8922 32 1 2.8728 -3.6046 -0.8877 33 1 1.3464 -5.1024 2.0523 34 1 0.0224 -4.4003 1.3310 35 1 2.6947 -5.9607 -2.1161 36 1 4.7891 -7.3612 -0.8401 37 1 3.4361 -8.4886 -1.0981 38 1 3.3442 -9.3551 -5.5588 39 1 5.2829 -8.1871 -6.5268 40 1 5.6054 -5.2068 -2.2949 41 1 6.2670 -6.6268 -1.4577 42 1 8.1693 -6.7114 -2.9606 43 1 8.0168 -5.0347 -2.3726 44 1 8.3523 -4.9298 -4.7779 45 1 6.6423 -4.5379 -4.4666 46 1 7.7975 -7.2059 -5.3771 47 1 6.7071 -6.1383 -6.2864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342535723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:55 Heat of formation + Delta-G solvation = -34.197784 kcal Electronic energy + Delta-G solvation = -26369.874989 eV Core-core repulsion = 22743.765093 eV Total energy + Delta-G solvation = -3626.109896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.16100 -39.46675 -37.17166 -35.70670 -35.04292 -32.87978 -32.77815 -31.48279 -29.91742 -29.81955 -27.60459 -25.86691 -24.38471 -23.63312 -23.54051 -21.56920 -20.71185 -19.94496 -19.73036 -17.48321 -17.28347 -16.37960 -16.25701 -15.86711 -15.78091 -14.89778 -14.69757 -14.52779 -14.45865 -14.22836 -14.20858 -13.88335 -13.76322 -13.41037 -13.04546 -12.91309 -12.86920 -12.41563 -12.36418 -12.20350 -12.08599 -11.65339 -11.26164 -11.20818 -11.08699 -10.93772 -10.78601 -10.67289 -9.99202 -9.95860 -9.65321 -9.59443 -9.33328 -9.22604 -9.02634 -8.93927 -8.44796 -8.15728 -6.09042 -4.12132 0.74104 0.99359 2.96767 3.16006 3.25212 3.33316 3.36770 3.69565 4.01456 4.18040 4.24021 4.38693 4.54801 4.56475 4.61226 4.79581 4.91580 5.02262 5.10342 5.18385 5.21217 5.26567 5.27462 5.34234 5.38576 5.42922 5.48970 5.60919 5.64831 5.68345 5.76896 5.78983 5.80654 5.94737 5.99898 6.11729 6.29311 6.43513 6.48826 6.53266 6.87800 7.45194 7.52378 7.61856 7.71250 7.75820 7.88187 7.93713 8.30722 8.48334 8.94101 9.52783 11.01906 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003318 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.188413 B = 8437.584026 C = 9921.482978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.136 4.136 11 C 0.076 3.924 12 H 0.096 0.904 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.538 6.538 16 N -0.726 5.726 17 C 0.171 3.829 18 C 0.111 3.889 19 N -0.469 5.469 20 C 0.092 3.908 21 C -0.169 4.169 22 C -0.037 4.037 23 C -0.105 4.105 24 C -0.085 4.085 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.083 4.083 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.345 0.655 34 H 0.354 0.646 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -15.217 -12.182 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.176 4.176 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.362 5.362 14 C 0.315 3.685 15 O -0.413 6.413 16 N -0.380 5.380 17 C 0.047 3.953 18 C -0.028 4.028 19 N -0.178 5.178 20 C -0.064 4.064 21 C -0.189 4.189 22 C -0.045 4.045 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.157 4.157 26 C -0.160 4.160 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.236 0.764 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.152 0.848 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.922 -16.741 -11.385 24.018 hybrid contribution 1.329 2.499 -0.802 2.942 sum 14.251 -14.242 -12.187 23.547 Atomic orbital electron populations 1.69959 1.06015 1.26662 1.50527 1.25013 0.94857 0.99293 0.95163 0.86542 0.80095 0.83750 0.77662 1.19764 1.20966 1.20935 1.21212 0.93030 0.90879 1.50965 0.92677 1.19112 0.93746 0.91127 0.97382 1.22375 0.99854 0.93966 1.01418 1.21462 0.94653 0.92197 0.95647 0.88605 1.58729 1.18437 1.55912 1.03163 1.20884 0.80973 0.84442 0.82203 1.90636 1.60231 1.53461 1.36979 1.45895 1.46923 1.34820 1.10339 1.20049 0.93887 0.91590 0.89775 1.21200 0.92141 0.93591 0.95908 1.67446 1.29210 1.15861 1.05265 1.22684 0.94933 0.97585 0.91215 1.22175 0.97055 0.98488 1.01132 1.19895 0.96314 0.95487 0.92777 1.20378 0.96959 0.98746 0.94658 1.20554 0.95556 0.98872 0.97272 1.21560 0.96397 1.01515 0.96226 1.21588 1.01958 0.97393 0.95058 1.20488 0.95000 0.97309 0.99149 0.92935 0.96343 0.96363 0.92632 0.92633 0.84140 0.83047 0.76443 0.89791 0.89909 0.82620 0.84791 0.89526 0.89915 0.91670 0.90851 0.91103 0.91134 0.90106 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.57 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.66 4.78 -26.73 -0.13 -2.78 16 11 C 0.08 1.31 3.21 -68.86 -0.22 1.09 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 N -0.83 -14.59 8.94 -5.65 -0.05 -14.64 16 14 C 0.53 8.90 7.08 -10.99 -0.08 8.82 16 15 O -0.54 -10.57 16.25 5.56 0.09 -10.48 16 16 N -0.73 -9.99 5.55 -61.47 -0.34 -10.33 16 17 C 0.17 2.17 5.49 -5.19 -0.03 2.14 16 18 C 0.11 1.30 6.15 -82.47 -0.51 0.79 16 19 N -0.47 -5.70 10.27 -9.41 -0.10 -5.80 16 20 C 0.09 0.88 11.19 -17.59 -0.20 0.68 16 21 C -0.17 -1.39 9.74 -39.34 -0.38 -1.77 16 22 C -0.04 -0.33 5.74 -104.63 -0.60 -0.93 16 23 C -0.10 -1.08 5.73 -104.69 -0.60 -1.68 16 24 C -0.09 -0.80 5.03 -28.11 -0.14 -0.94 16 25 C -0.12 -0.92 5.97 -26.68 -0.16 -1.07 16 26 C -0.12 -0.87 5.97 -26.66 -0.16 -1.03 16 27 C -0.08 -0.56 5.72 -28.15 -0.16 -0.72 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.35 6.10 8.58 -39.29 -0.34 5.76 16 34 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 35 H 0.40 5.08 8.46 -40.82 -0.35 4.74 16 36 H 0.08 1.02 5.99 -51.93 -0.31 0.71 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.77 6.32 -51.93 -0.33 0.44 16 42 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -32.19 379.81 -10.30 -42.49 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.43 Total: 12.17 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -3.91 Total: -10.01 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.25 Total: -56.02 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.19 -10.30 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342535723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.289 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds