Wall clock time and date at job start Fri Apr 10 2020 23:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99698 * 2 1 4 4 H 1.48501 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47261 * 299.99750 * 3 2 1 6 6 H 1.48499 * 109.47152 * 59.99943 * 3 2 1 7 7 C 1.37875 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00489 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46649 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47043 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46937 * 54.99834 * 11 10 9 13 13 N 1.46896 * 109.46960 * 295.00043 * 11 10 9 14 14 C 1.50701 * 109.47384 * 174.99893 * 11 10 9 15 15 O 1.21280 * 119.99781 * 99.99519 * 14 11 10 16 16 N 1.34771 * 119.99622 * 280.00195 * 14 11 10 17 17 C 1.46505 * 119.99622 * 179.97438 * 16 14 11 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 16 14 19 19 N 1.31696 * 119.49053 * 269.72456 * 18 17 16 20 20 C 1.31863 * 121.64908 * 179.75734 * 19 18 17 21 21 C 1.38099 * 120.58178 * 0.66521 * 20 19 18 22 22 C 1.39028 * 119.32550 * 359.71801 * 21 20 19 23 23 C 1.37886 * 118.49464 * 359.77127 * 22 21 20 24 24 C 1.50459 * 122.51824 * 180.68985 * 23 22 21 25 25 C 1.52790 * 110.47460 * 342.07637 * 24 23 22 26 26 C 1.53306 * 108.54315 * 51.07945 * 25 24 23 27 27 C 1.50340 * 118.70189 * 179.49940 * 22 21 20 28 28 H 0.97001 * 120.00335 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47114 * 60.00332 * 9 7 2 30 30 H 1.08996 * 109.47467 * 299.99802 * 9 7 2 31 31 H 1.08996 * 109.47568 * 60.00092 * 10 9 7 32 32 H 1.09004 * 109.47286 * 299.99929 * 10 9 7 33 33 H 1.00908 * 110.99936 * 299.99947 * 13 11 10 34 34 H 1.00903 * 111.00724 * 63.95270 * 13 11 10 35 35 H 0.96996 * 120.00772 * 359.97438 * 16 14 11 36 36 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 37 37 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 38 38 H 1.07999 * 119.70933 * 180.40081 * 20 19 18 39 39 H 1.07999 * 120.33642 * 179.69885 * 21 20 19 40 40 H 1.09003 * 109.30037 * 102.37537 * 24 23 22 41 41 H 1.09001 * 109.30707 * 221.75889 * 24 23 22 42 42 H 1.09000 * 109.62260 * 291.36509 * 25 24 23 43 43 H 1.09004 * 109.62562 * 170.80173 * 25 24 23 44 44 H 1.08997 * 109.63507 * 170.54059 * 26 25 24 45 45 H 1.09007 * 109.80107 * 50.03692 * 26 25 24 46 46 H 1.08997 * 109.30690 * 282.75225 * 27 22 21 47 47 H 1.08995 * 109.31240 * 42.16349 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9871 0.0012 12 1 0.7893 -5.0071 -0.8414 13 7 0.7274 -5.1183 1.2556 14 6 2.4552 -6.1298 -0.1214 15 8 2.7860 -6.7531 0.8650 16 7 2.9594 -6.4590 -1.3271 17 6 3.9075 -7.5696 -1.4462 18 6 4.3150 -7.7297 -2.8883 19 7 3.6222 -8.5289 -3.6729 20 6 3.9381 -8.6969 -4.9420 21 6 5.0249 -8.0428 -5.4881 22 6 5.7837 -7.1970 -4.6869 23 6 5.4175 -7.0373 -3.3672 24 6 6.1644 -6.1336 -2.4243 25 6 7.5521 -5.8132 -2.9777 26 6 7.3994 -5.3209 -4.4216 27 6 6.9705 -6.5009 -5.2929 28 1 -0.4851 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8714 -3.6039 0.8922 32 1 2.8728 -3.6046 -0.8877 33 1 1.3464 -5.1024 2.0523 34 1 0.0224 -4.4003 1.3310 35 1 2.6947 -5.9607 -2.1161 36 1 4.7891 -7.3612 -0.8401 37 1 3.4361 -8.4886 -1.0981 38 1 3.3442 -9.3551 -5.5588 39 1 5.2829 -8.1871 -6.5268 40 1 5.6054 -5.2068 -2.2949 41 1 6.2670 -6.6268 -1.4577 42 1 8.1693 -6.7114 -2.9606 43 1 8.0168 -5.0347 -2.3726 44 1 8.3523 -4.9298 -4.7779 45 1 6.6423 -4.5379 -4.4666 46 1 7.7975 -7.2059 -5.3771 47 1 6.7071 -6.1383 -6.2864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342535723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:53 Heat of formation + Delta-G solvation = -55.882790 kcal Electronic energy + Delta-G solvation = -26370.815322 eV Core-core repulsion = 22743.765093 eV Total energy + Delta-G solvation = -3627.050229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93485 -40.80197 -37.83770 -37.19072 -36.26682 -34.83656 -33.69334 -32.18412 -31.68986 -30.59006 -28.82712 -27.37767 -25.42115 -24.91586 -24.22152 -22.58004 -22.22344 -21.21972 -20.50489 -18.96814 -18.15883 -18.07013 -17.47416 -16.78291 -16.51514 -16.44908 -16.09770 -15.92420 -15.64384 -15.13015 -14.92882 -14.84800 -14.75663 -14.64443 -14.44340 -14.20157 -13.87690 -13.59420 -13.48001 -13.30798 -13.02588 -12.95387 -12.86599 -12.69312 -12.49384 -11.86462 -11.81466 -11.80980 -11.72963 -11.40094 -11.28554 -10.85896 -10.56543 -10.35438 -10.29727 -10.18421 -9.84873 -9.63816 -8.21147 -6.31557 -0.01781 0.27716 1.38900 1.40443 1.52121 1.58272 2.07313 2.40196 2.82659 3.12689 3.18076 3.49500 3.61663 3.74549 3.76038 3.85328 3.94875 3.97596 4.11820 4.18240 4.23577 4.31981 4.37645 4.46015 4.53644 4.64360 4.65891 4.70096 4.74051 4.83513 4.84390 4.95198 5.01823 5.07129 5.08567 5.22551 5.28406 5.29883 5.41446 5.44947 5.46969 5.65351 5.75700 5.80753 6.05802 6.21240 6.43983 6.48226 6.84132 6.98990 7.15924 7.37674 8.89933 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.003318 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.188413 B = 8437.584026 C = 9921.482978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.118 4.118 11 C 0.082 3.918 12 H 0.105 0.895 13 N -0.830 5.830 14 C 0.531 3.469 15 O -0.567 6.567 16 N -0.711 5.711 17 C 0.175 3.825 18 C 0.094 3.906 19 N -0.499 5.499 20 C 0.081 3.919 21 C -0.159 4.159 22 C -0.043 4.043 23 C -0.112 4.112 24 C -0.085 4.085 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.080 4.080 28 H 0.263 0.737 29 H 0.000 1.000 30 H 0.003 0.997 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.408 0.592 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.700 -15.183 -14.199 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.158 4.158 11 C -0.033 4.033 12 H 0.123 0.877 13 N -0.362 5.362 14 C 0.318 3.682 15 O -0.446 6.446 16 N -0.363 5.363 17 C 0.051 3.949 18 C -0.045 4.045 19 N -0.209 5.209 20 C -0.075 4.075 21 C -0.179 4.179 22 C -0.051 4.051 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.155 4.155 26 C -0.160 4.160 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.168 0.832 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.196 0.804 39 H 0.185 0.815 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.115 0.885 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.843 -16.716 -13.429 26.078 hybrid contribution 0.728 2.433 -0.245 2.551 sum 15.571 -14.283 -13.674 25.168 Atomic orbital electron populations 1.70073 1.07543 1.27684 1.51463 1.25874 0.95713 1.03014 0.94769 0.85486 0.79106 0.79238 0.77756 1.18799 1.20333 1.20603 1.21639 0.93391 0.92332 1.50676 0.92552 1.18978 0.94052 0.92101 0.95666 1.22116 0.98751 0.93456 1.01507 1.21385 0.94679 0.91364 0.95914 0.87719 1.58740 1.18413 1.55723 1.03297 1.20692 0.80772 0.84121 0.82631 1.90624 1.61301 1.54521 1.38112 1.45781 1.46243 1.34709 1.09581 1.20024 0.93349 0.90238 0.91241 1.20991 0.93249 0.94987 0.95239 1.67383 1.30213 1.16634 1.06646 1.23162 0.95753 0.98034 0.90568 1.22533 0.95837 0.96989 1.02492 1.20268 0.97071 0.95482 0.92271 1.20472 0.96641 0.98740 0.95604 1.20539 0.96508 0.98026 0.97197 1.21564 0.95214 1.01941 0.96791 1.21594 1.02424 0.97288 0.94667 1.20556 0.94450 0.97205 0.99442 0.92765 0.98175 0.97897 0.93342 0.91635 0.84177 0.83181 0.75652 0.89443 0.91371 0.80364 0.81534 0.90890 0.90440 0.90942 0.90644 0.89439 0.92458 0.88497 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.47 13.29 21.45 0.28 -54.18 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 43.13 29.54 68.60 2.03 45.16 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.44 4.74 29.85 0.14 1.58 16 10 C -0.12 -4.63 4.78 30.60 0.15 -4.49 16 11 C 0.08 2.84 3.21 44.17 0.14 2.98 16 12 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 13 N -0.83 -29.50 8.94 -171.80 -1.54 -31.04 16 14 C 0.53 17.98 7.08 87.66 0.62 18.60 16 15 O -0.57 -22.55 16.25 -3.03 -0.05 -22.60 16 16 N -0.71 -19.66 5.55 -466.78 -2.59 -22.25 16 17 C 0.18 4.52 5.49 85.63 0.47 4.99 16 18 C 0.09 2.18 6.15 42.69 0.26 2.44 16 19 N -0.50 -11.87 10.27 -183.69 -1.89 -13.76 16 20 C 0.08 1.40 11.19 84.66 0.95 2.34 16 21 C -0.16 -2.17 9.74 22.43 0.22 -1.95 16 22 C -0.04 -0.68 5.74 -19.87 -0.11 -0.79 16 23 C -0.11 -2.21 5.73 -19.91 -0.11 -2.32 16 24 C -0.09 -1.57 5.03 29.70 0.15 -1.42 16 25 C -0.12 -1.63 5.97 30.63 0.18 -1.45 16 26 C -0.12 -1.46 5.97 30.64 0.18 -1.27 16 27 C -0.08 -0.83 5.72 29.68 0.17 -0.66 16 28 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.00 0.14 6.87 -2.39 -0.02 0.13 16 31 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 33 H 0.35 12.36 8.58 -89.69 -0.77 11.59 16 34 H 0.35 12.64 7.55 -89.69 -0.68 11.97 16 35 H 0.41 10.27 8.46 -92.71 -0.78 9.49 16 36 H 0.09 2.18 5.99 -2.39 -0.01 2.16 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 1.46 6.32 -2.39 -0.02 1.44 16 42 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.06 0.84 8.11 -2.38 -0.02 0.82 16 46 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.95 379.81 -0.88 -69.83 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -1.23 Total: 38.96 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.10 Total: -10.11 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -5.73 Total: -121.23 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -68.95 -0.88 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342535723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.942 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds