Wall clock time and date at job start Fri Apr 10 2020 23:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38622 * 120.75781 * 2 1 4 4 C 1.38563 * 119.35195 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.54730 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90500 * 0.02562 * 4 3 2 7 7 C 1.32714 * 121.64038 * 359.97438 * 6 4 3 8 8 C 1.48171 * 119.72093 * 179.97438 * 7 6 4 9 9 O 1.21516 * 119.99900 * 180.02562 * 8 7 6 10 10 N 1.34773 * 120.00197 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99943 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.20779 * 35.64937 * 11 10 8 13 13 C 1.50136 * 109.20844 * 155.00358 * 11 10 8 14 14 C 1.52524 * 105.41461 * 218.02928 * 13 11 10 15 15 C 1.46239 * 114.27509 * 270.58904 * 14 13 11 16 16 N 1.50166 * 107.53314 * 58.41238 * 15 14 13 17 17 C 1.36934 * 120.53776 * 109.60403 * 16 15 14 18 18 H 1.08006 * 120.00127 * 156.72260 * 17 16 15 19 19 C 1.38817 * 120.00626 * 336.72583 * 17 16 15 20 20 N 1.31617 * 119.99165 * 340.40263 * 19 17 16 21 21 Si 1.86799 * 120.00420 * 160.40184 * 19 17 16 22 22 H 1.48500 * 109.46991 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47029 * 120.00024 * 21 19 17 24 24 H 1.48498 * 109.47127 * 240.00347 * 21 19 17 25 25 C 1.43435 * 118.92506 * 289.58676 * 16 15 14 26 26 C 1.54842 * 109.21334 * 276.32424 * 11 10 8 27 27 C 1.38595 * 120.75158 * 179.72549 * 2 1 3 28 28 H 1.09006 * 109.47460 * 89.99393 * 1 2 3 29 29 H 1.08997 * 109.47924 * 209.99695 * 1 2 3 30 30 H 1.09003 * 109.47162 * 330.00044 * 1 2 3 31 31 H 1.08001 * 120.32316 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47283 * 89.99806 * 5 4 3 33 33 H 1.08998 * 109.47171 * 209.99794 * 5 4 3 34 34 H 1.08995 * 109.47026 * 329.99874 * 5 4 3 35 35 H 0.97004 * 119.99852 * 0.02562 * 10 8 7 36 36 H 1.09001 * 110.24396 * 336.99668 * 13 11 10 37 37 H 1.08995 * 110.24964 * 99.05009 * 13 11 10 38 38 H 1.08994 * 108.52897 * 31.83751 * 14 13 11 39 39 H 1.09004 * 108.52082 * 149.50765 * 14 13 11 40 40 H 1.09003 * 109.84857 * 177.91983 * 15 14 13 41 41 H 1.08999 * 109.84826 * 298.90129 * 15 14 13 42 42 H 0.97003 * 119.99650 * 179.97438 * 20 19 17 43 43 H 1.08997 * 108.16236 * 213.28517 * 25 16 15 44 44 H 1.08994 * 108.15978 * 330.06400 * 25 16 15 45 45 H 1.09001 * 109.35736 * 320.99743 * 26 11 10 46 46 H 1.08998 * 109.35543 * 80.58697 * 26 11 10 47 47 H 1.08000 * 120.47168 * 359.97173 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2159 1.1912 0.0000 4 6 3.6011 1.1572 -0.0005 5 6 4.3762 2.4497 -0.0011 6 7 4.2487 0.0125 -0.0016 7 6 3.6081 -1.1498 -0.0016 8 6 4.3805 -2.4142 -0.0033 9 8 3.7991 -3.4813 -0.0039 10 7 5.7278 -2.3809 -0.0043 11 6 6.4914 -3.6311 -0.0055 12 1 5.9641 -4.3729 -0.6054 13 6 7.8451 -3.3826 -0.6055 14 6 8.1588 -4.6281 -1.4281 15 6 8.8451 -5.6832 -0.6835 16 7 7.9700 -6.0605 0.4770 17 6 7.3316 -7.2717 0.5021 18 1 7.0261 -7.7017 1.4446 19 6 7.0769 -7.9469 -0.6838 20 7 7.0831 -7.2944 -1.8268 21 14 6.7255 -9.7813 -0.6573 22 1 6.7763 -10.2749 0.7424 23 1 5.3759 -10.0350 -1.2224 24 1 7.7444 -10.4923 -1.4706 25 6 7.8140 -5.1319 1.5590 26 6 6.6207 -4.1506 1.4474 27 6 2.2156 -1.1911 0.0057 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3635 -0.8899 0.5137 30 1 -0.3633 0.8900 0.5138 31 1 1.6936 2.1366 -0.0004 32 1 4.5635 2.7615 1.0264 33 1 5.3261 2.3034 -0.5153 34 1 3.7997 3.2188 -0.5149 35 1 6.1919 -1.5291 -0.0036 36 1 7.8168 -2.5030 -1.2487 37 1 8.5883 -3.2528 0.1811 38 1 7.2237 -5.0309 -1.8171 39 1 8.7863 -4.3376 -2.2707 40 1 9.0003 -6.5493 -1.3269 41 1 9.8043 -5.3152 -0.3194 42 1 6.9055 -7.7662 -2.6555 43 1 7.7007 -5.7011 2.4816 44 1 8.7281 -4.5432 1.6358 45 1 6.7820 -3.3077 2.1195 46 1 5.7023 -4.6650 1.7302 47 1 1.6957 -2.1377 0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052513754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:27 Heat of formation + Delta-G solvation = -1.523726 kcal Electronic energy + Delta-G solvation = -26999.836459 eV Core-core repulsion = 23375.143416 eV Total energy + Delta-G solvation = -3624.693043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81535 -40.56559 -39.20270 -36.34530 -35.23986 -34.16952 -33.59840 -33.33286 -31.54282 -29.02520 -28.39525 -28.01009 -26.11647 -25.59647 -24.17786 -22.27806 -21.97568 -21.25602 -20.78164 -18.75919 -18.60448 -17.67998 -17.01581 -16.93100 -16.74482 -16.38381 -15.98981 -15.73526 -15.46428 -15.17980 -14.95775 -14.70486 -14.15052 -14.12478 -13.94564 -13.76309 -13.51906 -13.42816 -13.23731 -13.19214 -13.07316 -13.01330 -12.72367 -12.61352 -12.34769 -12.16465 -11.96498 -11.80030 -11.61527 -11.26431 -11.21983 -11.13609 -10.57778 -10.53493 -10.45677 -10.14496 -9.89279 -8.64610 -7.82770 -5.22939 -0.40621 0.16151 1.44204 1.46902 1.56303 1.67431 2.08128 2.54118 2.76663 3.02795 3.30194 3.61601 3.62982 3.66853 3.96888 4.00107 4.00880 4.08494 4.30511 4.36964 4.47112 4.50321 4.61590 4.63949 4.70251 4.72342 4.76076 4.85247 4.86025 4.87785 5.00000 5.04544 5.11985 5.16641 5.23911 5.26511 5.27410 5.28341 5.38576 5.49200 5.62226 5.67085 5.67332 5.77155 6.18716 6.42332 6.44716 6.81926 7.18625 7.19384 7.92728 8.40776 9.21664 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.003237 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.658666 B = 8649.019871 C = 9516.780686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.118 3.882 5 C -0.099 4.099 6 N -0.479 5.479 7 C 0.070 3.930 8 C 0.555 3.445 9 O -0.578 6.578 10 N -0.693 5.693 11 C 0.166 3.834 12 H 0.043 0.957 13 C -0.106 4.106 14 C -0.122 4.122 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.261 4.261 18 H 0.058 0.942 19 C -0.045 4.045 20 N -0.916 5.916 21 Si 0.957 3.043 22 H -0.272 1.272 23 H -0.300 1.300 24 H -0.286 1.286 25 C 0.158 3.842 26 C -0.141 4.141 27 C -0.140 4.140 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.416 0.584 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.246 0.754 43 H 0.029 0.971 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.018 0.982 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 24.538 3.240 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.161 4.161 4 C -0.023 4.023 5 C -0.156 4.156 6 N -0.193 5.193 7 C -0.067 4.067 8 C 0.341 3.659 9 O -0.458 6.458 10 N -0.344 5.344 11 C 0.062 3.938 12 H 0.061 0.939 13 C -0.143 4.143 14 C -0.161 4.161 15 C 0.044 3.956 16 N -0.324 5.324 17 C -0.391 4.391 18 H 0.076 0.924 19 C -0.241 4.241 20 N -0.562 5.562 21 Si 0.786 3.214 22 H -0.197 1.197 23 H -0.228 1.228 24 H -0.213 1.213 25 C 0.029 3.971 26 C -0.183 4.183 27 C -0.162 4.162 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.198 0.802 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.037 0.963 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.631 23.638 3.094 24.745 hybrid contribution -1.211 -1.462 -0.282 1.919 sum -7.841 22.177 2.812 23.690 Atomic orbital electron populations 1.20927 0.87200 1.04746 1.04179 1.20726 0.98820 0.91620 0.94131 1.22512 0.94313 0.99975 0.99331 1.22039 0.92528 0.93963 0.93752 1.20840 1.00190 0.90213 1.04401 1.67337 1.41624 0.97766 1.12588 1.20856 0.92039 0.91510 1.02318 1.18499 0.83259 0.87867 0.76324 1.90800 1.70846 1.32131 1.52004 1.46172 1.05360 1.10650 1.72192 1.20928 0.92081 0.83919 0.96853 0.93885 1.21265 0.94908 0.98262 0.99911 1.20738 1.02397 0.94909 0.98085 1.20141 0.90257 0.96682 0.88558 1.44460 1.51943 1.14540 1.21465 1.19426 1.32222 0.95486 0.92002 0.92379 1.25543 1.00809 1.01850 0.95873 1.70153 1.54024 1.34445 0.97588 0.85369 0.76520 0.82006 0.77498 1.19693 1.22791 1.21256 1.20480 0.95131 0.90761 0.90730 1.23188 1.00087 0.99402 0.95585 1.22097 0.93570 1.00590 0.99902 0.89155 0.91031 0.88177 0.80157 0.88967 0.90719 0.87744 0.74620 0.90067 0.89577 0.92345 0.93447 0.92410 0.94686 0.94512 0.95239 0.92120 0.90490 0.96258 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.06 71.23 0.72 -0.57 16 2 C -0.05 -0.84 5.91 -19.69 -0.12 -0.96 16 3 C -0.14 -2.08 9.45 22.44 0.21 -1.87 16 4 C 0.12 2.18 6.78 42.68 0.29 2.47 16 5 C -0.10 -1.02 10.17 71.24 0.72 -0.30 16 6 N -0.48 -12.60 9.45 -173.07 -1.64 -14.23 16 7 C 0.07 2.20 6.75 41.91 0.28 2.49 16 8 C 0.55 22.03 7.76 86.88 0.67 22.71 16 9 O -0.58 -28.50 15.99 -3.77 -0.06 -28.56 16 10 N -0.69 -24.89 4.96 -446.51 -2.22 -27.10 16 11 C 0.17 6.89 2.22 44.70 0.10 6.99 16 12 H 0.04 2.35 6.27 -2.39 -0.01 2.33 16 13 C -0.11 -3.76 5.34 29.51 0.16 -3.60 16 14 C -0.12 -5.32 5.02 28.35 0.14 -5.18 16 15 C 0.17 7.84 5.24 83.58 0.44 8.28 16 16 N -0.60 -30.56 2.60 -707.84 -1.84 -32.40 16 17 C -0.26 -14.96 9.63 84.04 0.81 -14.15 16 18 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 19 C -0.04 -2.59 4.91 84.86 0.42 -2.17 16 20 N -0.92 -54.34 9.43 21.65 0.20 -54.14 16 21 Si 0.96 47.17 29.60 68.60 2.03 49.20 16 22 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 C 0.16 6.74 5.18 87.60 0.45 7.20 16 26 C -0.14 -5.83 5.98 31.87 0.19 -5.64 16 27 C -0.14 -3.88 9.34 22.61 0.21 -3.67 16 28 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.88 8.10 -2.39 -0.02 0.86 16 30 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 31 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 0.48 8.08 -2.39 -0.02 0.46 16 35 H 0.42 12.31 7.81 -92.71 -0.72 11.59 16 36 H 0.08 2.47 7.85 -2.39 -0.02 2.45 16 37 H 0.09 2.73 6.28 -2.39 -0.02 2.71 16 38 H 0.06 3.13 5.29 -2.39 -0.01 3.12 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 3.10 6.05 -2.39 -0.01 3.08 16 41 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.03 1.27 7.99 -2.39 -0.02 1.25 16 44 H 0.06 2.22 6.88 -2.39 -0.02 2.20 16 45 H 0.08 2.68 8.13 -2.39 -0.02 2.66 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.13 3.93 7.64 -2.91 -0.02 3.91 16 Total: -1.00 -75.70 370.63 2.43 -73.27 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.25 Total: 21.93 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.70 Total: 12.03 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.49 Total: -127.87 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.06 Total: -28.56 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -75.70 2.43 -73.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052513754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.746 kcal (2) G-P(sol) polarization free energy of solvation -75.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds