Wall clock time and date at job start Fri Apr 10 2020 23:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38347 * 119.45962 * 2 1 4 4 C 1.38357 * 119.30221 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.85703 * 179.97438 * 4 3 2 6 6 C 1.40027 * 118.28590 * 359.97438 * 4 3 2 7 7 C 1.47844 * 120.55678 * 179.97438 * 6 4 3 8 8 O 1.21551 * 120.00125 * 89.99639 * 7 6 4 9 9 N 1.34777 * 119.99935 * 269.99999 * 7 6 4 10 10 C 1.47015 * 125.64881 * 179.97438 * 9 7 6 11 11 C 1.54324 * 107.27460 * 178.96382 * 10 9 7 12 12 H 1.08998 * 110.87639 * 96.24263 * 11 10 9 13 13 C 1.53003 * 110.72342 * 219.44679 * 11 10 9 14 14 C 1.55165 * 102.93877 * 337.80539 * 11 10 9 15 15 H 1.08994 * 111.00702 * 277.39167 * 14 11 10 16 16 N 1.46499 * 111.00257 * 153.57654 * 14 11 10 17 17 C 1.36931 * 120.00122 * 155.00211 * 16 14 11 18 18 H 1.08002 * 120.00098 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00429 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47422 * 125.64591 * 0.02722 * 9 7 6 26 26 C 1.39515 * 118.88463 * 0.25457 * 6 4 3 27 27 C 1.50696 * 119.72014 * 179.75172 * 26 6 4 28 28 N 1.31704 * 120.56522 * 359.45193 * 26 6 4 29 29 H 1.08994 * 109.47278 * 89.99514 * 1 2 3 30 30 H 1.09001 * 109.47317 * 209.99831 * 1 2 3 31 31 H 1.09000 * 109.47189 * 330.00038 * 1 2 3 32 32 H 1.08000 * 120.35528 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47003 * 270.01992 * 5 4 3 34 34 H 1.08998 * 109.47175 * 30.01628 * 5 4 3 35 35 H 1.08996 * 109.47354 * 150.02251 * 5 4 3 36 36 H 1.08999 * 109.88519 * 59.54230 * 10 9 7 37 37 H 1.09003 * 110.01319 * 298.45164 * 10 9 7 38 38 H 1.08993 * 109.47580 * 173.51811 * 13 11 10 39 39 H 1.08998 * 109.47057 * 293.52100 * 13 11 10 40 40 H 1.09008 * 109.47056 * 53.51467 * 13 11 10 41 41 H 0.97001 * 119.99790 * 334.99728 * 16 14 11 42 42 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 43 43 H 1.08996 * 110.37226 * 85.26996 * 25 9 7 44 44 H 1.08994 * 110.37138 * 322.94043 * 25 9 7 45 45 H 1.08997 * 109.47423 * 89.99461 * 27 26 6 46 46 H 1.08999 * 109.47480 * 210.00092 * 27 26 6 47 47 H 1.09008 * 109.46525 * 329.99765 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3475 2.4923 -0.0011 6 6 4.2312 -0.0341 -0.0005 7 6 5.7083 -0.0967 -0.0016 8 8 6.3163 -0.1220 1.0505 9 7 6.3806 -0.1258 -1.1694 10 6 7.8422 -0.1873 -1.3152 11 6 8.1506 -0.2280 -2.8268 12 1 8.3774 0.7692 -3.2039 13 6 9.3042 -1.1900 -3.1183 14 6 6.8263 -0.7580 -3.4374 15 1 6.7760 -1.8451 -3.3775 16 7 6.6670 -0.3032 -4.8209 17 6 5.8936 -1.0216 -5.6930 18 1 5.4006 -1.9233 -5.3609 19 6 5.7431 -0.5910 -7.0041 20 7 6.3435 0.5082 -7.4087 21 14 4.6817 -1.5669 -8.1917 22 1 4.6790 -0.8981 -9.5175 23 1 5.2294 -2.9402 -8.3312 24 1 3.2930 -1.6384 -7.6705 25 6 5.7722 -0.1001 -2.5119 26 6 3.4716 -1.2043 -0.0054 27 6 4.1626 -2.5435 -0.0111 28 7 2.1558 -1.1487 0.0009 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6444 2.1382 0.0004 33 1 4.5340 2.8037 -1.0290 34 1 3.7723 3.2623 0.5130 35 1 5.2978 2.3452 0.5120 36 1 8.2253 -1.0874 -0.8344 37 1 8.2993 0.6951 -0.8673 38 1 9.4293 -1.2912 -4.1963 39 1 10.2228 -0.7988 -2.6810 40 1 9.0822 -2.1653 -2.6850 41 1 7.1094 0.5069 -5.1191 42 1 6.2380 0.8093 -8.3248 43 1 5.5825 0.9272 -2.8229 44 1 4.8474 -0.6768 -2.5205 45 1 4.3294 -2.8707 1.0151 46 1 3.5383 -3.2724 -0.5280 47 1 5.1201 -2.4560 -0.5248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054921511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:11 Heat of formation + Delta-G solvation = -18.757841 kcal Electronic energy + Delta-G solvation = -27420.596025 eV Core-core repulsion = 23795.155655 eV Total energy + Delta-G solvation = -3625.440370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.05765 -40.63789 -38.93533 -35.90019 -35.32393 -34.88457 -33.78994 -32.51209 -30.20846 -29.28300 -29.05808 -28.51103 -27.03651 -25.86794 -23.74120 -22.80764 -22.15932 -21.39198 -20.63096 -19.16318 -18.46499 -18.23237 -17.42509 -17.06164 -16.23534 -15.98216 -15.85255 -15.45859 -15.34914 -14.96130 -14.60132 -14.52364 -14.38118 -14.22220 -14.16426 -14.09234 -13.93075 -13.66642 -13.29504 -13.23193 -13.08071 -13.03679 -12.90877 -12.84667 -12.73199 -12.69855 -12.26634 -12.19547 -12.02862 -11.73861 -11.48124 -11.33425 -10.95712 -10.58198 -10.50558 -9.85835 -9.78247 -9.06085 -7.95619 -5.25107 -0.18928 0.11614 1.33064 1.49259 1.49969 1.56062 1.83755 2.53878 2.56145 3.08713 3.25568 3.35641 3.48569 3.57143 3.72222 3.77124 3.90447 4.02754 4.15799 4.26452 4.27743 4.30806 4.43387 4.44025 4.49641 4.52531 4.55571 4.56557 4.64226 4.65819 4.79097 4.83442 4.87176 4.88760 5.00867 5.05380 5.08048 5.10352 5.12220 5.17039 5.17735 5.32912 5.45466 5.53360 5.62942 6.24970 6.31832 6.86108 6.91992 7.33568 8.03608 8.28751 9.26706 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010553 B = 0.004621 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.541130 B = 6057.572592 C = 7563.051890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.136 3.864 3 C -0.179 4.179 4 C -0.012 4.012 5 C -0.118 4.118 6 C -0.203 4.203 7 C 0.591 3.409 8 O -0.571 6.571 9 N -0.600 5.600 10 C 0.117 3.883 11 C -0.102 4.102 12 H 0.082 0.918 13 C -0.129 4.129 14 C 0.174 3.826 15 H 0.066 0.934 16 N -0.717 5.717 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.063 4.063 20 N -0.963 5.963 21 Si 0.964 3.036 22 H -0.296 1.296 23 H -0.278 1.278 24 H -0.281 1.281 25 C 0.093 3.907 26 C 0.157 3.843 27 C -0.106 4.106 28 N -0.509 5.509 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 1.317 15.649 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.001 4.001 3 C -0.198 4.198 4 C -0.020 4.020 5 C -0.175 4.175 6 C -0.208 4.208 7 C 0.380 3.620 8 O -0.451 6.451 9 N -0.332 5.332 10 C -0.005 4.005 11 C -0.122 4.122 12 H 0.100 0.900 13 C -0.186 4.186 14 C 0.063 3.937 15 H 0.084 0.916 16 N -0.355 5.355 17 C -0.375 4.375 18 H 0.092 0.908 19 C -0.256 4.256 20 N -0.613 5.613 21 Si 0.793 3.207 22 H -0.222 1.222 23 H -0.204 1.204 24 H -0.207 1.207 25 C -0.033 4.033 26 C 0.019 3.981 27 C -0.163 4.163 28 N -0.220 5.220 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.192 0.808 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.947 0.399 16.161 17.225 hybrid contribution 0.172 0.653 -1.086 1.279 sum -5.774 1.052 15.074 16.176 Atomic orbital electron populations 1.20858 0.85867 1.04891 1.04229 1.22090 0.98926 0.87830 0.91244 1.22112 0.92996 1.00782 1.03957 1.20640 0.94906 0.94438 0.91989 1.20922 0.99571 0.93307 1.03675 1.20597 0.93546 0.95807 1.10824 1.17772 0.86686 0.75349 0.82235 1.90747 1.70194 1.52580 1.31603 1.48471 1.08319 1.70805 1.05568 1.22099 0.79333 1.02713 0.96372 1.22429 0.96013 1.00946 0.92833 0.89996 1.21620 0.96964 0.98426 1.01607 1.21490 0.91981 0.96833 0.83439 0.91635 1.42343 1.57978 1.29487 1.05734 1.19512 1.21512 1.05051 0.91435 0.90758 1.25425 1.02319 0.98859 0.99018 1.69785 1.48998 1.25234 1.17298 0.85363 0.78925 0.78145 0.78236 1.22242 1.20413 1.20731 1.23117 0.98270 1.00949 0.80998 1.21465 0.89397 0.95012 0.92224 1.20791 0.99542 0.92099 1.03892 1.67418 1.08557 1.30473 1.15568 0.89278 0.90367 0.87791 0.80823 0.89718 0.87541 0.92484 0.90398 0.90724 0.93309 0.90666 0.92037 0.78922 0.93941 0.92223 0.92468 0.89154 0.89022 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 10.16 71.24 0.72 -0.83 16 2 C 0.14 3.23 6.78 42.57 0.29 3.52 16 3 C -0.18 -3.91 9.43 22.32 0.21 -3.70 16 4 C -0.01 -0.31 5.95 -19.40 -0.12 -0.42 16 5 C -0.12 -2.59 9.69 71.24 0.69 -1.90 16 6 C -0.20 -6.27 4.54 -19.99 -0.09 -6.36 16 7 C 0.59 19.55 4.38 86.79 0.38 19.93 16 8 O -0.57 -21.67 17.43 -3.88 -0.07 -21.74 16 9 N -0.60 -18.70 3.32 -815.18 -2.71 -21.41 16 10 C 0.12 3.24 6.46 86.73 0.56 3.80 16 11 C -0.10 -3.00 3.20 -9.60 -0.03 -3.03 16 12 H 0.08 2.48 8.00 -2.39 -0.02 2.46 16 13 C -0.13 -3.35 9.16 71.98 0.66 -2.69 16 14 C 0.17 6.29 3.16 46.40 0.15 6.43 16 15 H 0.07 2.44 8.00 -2.39 -0.02 2.42 16 16 N -0.72 -33.06 5.24 -316.33 -1.66 -34.72 16 17 C -0.24 -12.64 9.96 84.03 0.84 -11.80 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 19 C -0.06 -3.43 5.50 84.86 0.47 -2.97 16 20 N -0.96 -55.93 13.06 21.65 0.28 -55.65 16 21 Si 0.96 44.30 29.55 68.60 2.03 46.33 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 25 C 0.09 3.17 6.38 86.87 0.55 3.73 16 26 C 0.16 4.79 6.82 42.88 0.29 5.08 16 27 C -0.11 -2.85 9.79 71.23 0.70 -2.15 16 28 N -0.51 -14.81 10.17 -171.06 -1.74 -16.55 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.11 1.65 8.10 -2.39 -0.02 1.63 16 35 H 0.06 1.44 7.19 -2.39 -0.02 1.42 16 36 H 0.08 2.04 7.76 -2.39 -0.02 2.02 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.06 1.49 8.06 -2.38 -0.02 1.47 16 41 H 0.38 18.76 7.76 -92.71 -0.72 18.04 16 42 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.07 7.69 -2.39 -0.02 2.06 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.07 1.87 7.07 -2.38 -0.02 1.86 16 Total: -1.00 -66.53 386.65 2.65 -63.89 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.24 Total: 33.22 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.27 Total: 6.64 kcal Atomic # 7 Polarization: -122.51 SS G_CDS: -5.83 Total: -128.33 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.07 Total: -21.74 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.53 2.65 -63.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054921511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.129 kcal (2) G-P(sol) polarization free energy of solvation -66.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds