Wall clock time and date at job start Fri Apr 10 2020 23:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.52364 * 2 1 4 4 C 1.53119 * 109.51815 * 239.87573 * 2 1 3 5 5 C 1.53044 * 109.27589 * 182.37818 * 4 2 1 6 6 N 1.46847 * 109.51335 * 59.18419 * 5 4 2 7 7 C 1.46847 * 111.20163 * 298.24410 * 6 5 4 8 8 H 1.08999 * 109.45820 * 301.75158 * 7 6 5 9 9 C 1.50691 * 109.46516 * 181.76712 * 7 6 5 10 10 O 1.21282 * 120.00004 * 339.95726 * 9 7 6 11 11 N 1.34778 * 120.00009 * 159.95490 * 9 7 6 12 12 C 1.46502 * 120.00146 * 0.02562 * 11 9 7 13 13 C 1.50701 * 109.46909 * 89.99992 * 12 11 9 14 14 H 1.08008 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00260 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99778 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00549 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47001 * 89.99684 * 17 15 13 19 19 H 1.48497 * 109.47542 * 210.00306 * 17 15 13 20 20 H 1.48502 * 109.46914 * 329.99975 * 17 15 13 21 21 C 1.46498 * 120.00009 * 180.02562 * 11 9 7 22 22 C 1.50694 * 109.47328 * 90.00089 * 21 11 9 23 23 C 1.38677 * 120.41937 * 89.99716 * 22 21 11 24 24 C 1.38631 * 118.42155 * 179.97438 * 23 22 21 25 25 C 1.38223 * 119.16148 * 0.02562 * 24 23 22 26 26 N 1.31860 * 120.76675 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.71987 * 359.70754 * 26 25 24 28 28 C 1.53041 * 109.51486 * 61.75514 * 7 6 5 29 29 H 1.08991 * 109.47616 * 180.12018 * 1 2 3 30 30 H 1.09002 * 109.47141 * 300.12655 * 1 2 3 31 31 H 1.09001 * 109.46958 * 60.11968 * 1 2 3 32 32 H 1.09000 * 109.50507 * 62.44483 * 4 2 1 33 33 H 1.08996 * 109.50916 * 302.31799 * 4 2 1 34 34 H 1.09002 * 109.46396 * 179.19729 * 5 4 2 35 35 H 1.08994 * 109.46485 * 299.17654 * 5 4 2 36 36 H 1.00902 * 110.99979 * 62.35429 * 6 5 4 37 37 H 1.08992 * 109.47354 * 210.00030 * 12 11 9 38 38 H 1.09001 * 109.46918 * 330.00429 * 12 11 9 39 39 H 0.96995 * 120.00142 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47262 * 209.99740 * 21 11 9 41 41 H 1.08997 * 109.47154 * 329.99992 * 21 11 9 42 42 H 1.08004 * 120.78901 * 0.02703 * 23 22 21 43 43 H 1.07992 * 120.41886 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.61984 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.61855 * 180.31124 * 27 26 25 46 46 H 1.08996 * 109.50341 * 180.87808 * 28 7 6 47 47 H 1.08996 * 109.50165 * 60.75338 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5709 -0.7731 -1.2130 6 7 4.0113 -1.4769 -0.0017 7 6 3.5721 -0.7738 1.2104 8 1 3.9678 0.2418 1.2045 9 6 4.0807 -1.5039 2.4266 10 8 4.4158 -2.6662 2.3400 11 7 4.1632 -0.8651 3.6105 12 6 3.7579 0.5388 3.7152 13 6 2.2934 0.6143 4.0625 14 1 1.7216 -0.2929 4.1918 15 6 1.6831 1.8413 4.2141 16 7 2.3791 2.9459 4.0552 17 14 -0.1323 1.9349 4.6438 18 1 -0.2913 1.9515 6.1201 19 1 -0.7138 3.1747 4.0693 20 1 -0.8352 0.7528 4.0835 21 6 4.6582 -1.5748 4.7927 22 6 6.1534 -1.4122 4.8868 23 6 6.7013 -0.3476 5.5864 24 6 8.0820 -0.2384 5.6469 25 6 8.8611 -1.1873 5.0119 26 7 8.3054 -2.1868 4.3554 27 6 6.9959 -2.3255 4.2822 28 6 2.0430 -0.7249 1.2474 29 1 -0.3634 -1.0275 0.0022 30 1 -0.3633 0.5158 0.8889 31 1 -0.3633 0.5120 -0.8911 32 1 1.7152 -0.1883 -2.1395 33 1 1.6455 -1.7396 -1.2680 34 1 3.9378 -1.3008 -2.0933 35 1 3.9666 0.2424 -1.2070 36 1 3.6894 -2.4332 -0.0019 37 1 4.3418 1.0284 4.4946 38 1 3.9317 1.0391 2.7625 39 1 1.9497 3.8091 4.1614 40 1 4.1909 -1.1616 5.6866 41 1 4.4123 -2.6334 4.7104 42 1 6.0674 0.3787 6.0734 43 1 8.5430 0.5776 6.1833 44 1 9.9374 -1.1096 5.0546 45 1 6.5771 -3.1601 3.7396 46 1 1.7174 -0.1894 2.1391 47 1 1.6468 -1.7402 1.2668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126057422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:08 Heat of formation + Delta-G solvation = -12.967527 kcal Electronic energy + Delta-G solvation = -27887.925546 eV Core-core repulsion = 24262.736262 eV Total energy + Delta-G solvation = -3625.189283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.14373 -39.48892 -37.69034 -35.28567 -33.17642 -32.93731 -32.13024 -31.49431 -30.43485 -27.60507 -26.82104 -26.10408 -23.48125 -23.28352 -22.85043 -22.24423 -21.39442 -19.84118 -18.38518 -16.93547 -16.69747 -16.43496 -15.87779 -15.77922 -15.13451 -14.87879 -14.49943 -14.47222 -14.08983 -13.77315 -13.63192 -13.41465 -13.26724 -12.77626 -12.75117 -12.47257 -12.41272 -12.28780 -11.85706 -11.55804 -11.36229 -11.22463 -11.18624 -11.09441 -11.01189 -10.84849 -10.72987 -10.44703 -10.20667 -10.00253 -9.82995 -9.55330 -9.22175 -9.05950 -8.71358 -8.58387 -7.95415 -7.81411 -6.29460 -4.35465 1.34952 1.55974 3.13727 3.22538 3.23834 3.37052 3.73374 4.18749 4.23586 4.70738 4.75221 4.98746 5.02909 5.05420 5.10524 5.20788 5.26339 5.28305 5.35109 5.47439 5.50476 5.63060 5.69054 5.75772 5.84119 5.91731 5.96279 6.06192 6.11213 6.12712 6.17087 6.19589 6.28895 6.37060 6.38306 6.50414 6.59277 6.65717 6.74435 6.93881 6.98682 7.09034 7.32771 7.48850 7.64686 7.75825 7.93967 8.22869 8.25230 8.68485 8.96939 9.30304 10.76639 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.005603 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.660577 B = 4996.483567 C = 7011.074895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.153 4.153 5 C 0.061 3.939 6 N -0.672 5.672 7 C 0.081 3.919 8 H 0.102 0.898 9 C 0.528 3.472 10 O -0.564 6.564 11 N -0.591 5.591 12 C 0.237 3.763 13 C -0.536 4.536 14 H 0.064 0.936 15 C 0.070 3.930 16 N -0.885 5.885 17 Si 0.889 3.111 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.162 3.838 22 C -0.145 4.145 23 C -0.059 4.059 24 C -0.179 4.179 25 C 0.088 3.912 26 N -0.492 5.492 27 C 0.119 3.881 28 C -0.157 4.157 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.345 0.655 37 H 0.035 0.965 38 H 0.039 0.961 39 H 0.266 0.734 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.149 0.851 45 H 0.158 0.842 46 H 0.124 0.876 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 -3.680 -2.756 5.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.193 4.193 5 C -0.069 4.069 6 N -0.303 5.303 7 C -0.032 4.032 8 H 0.120 0.880 9 C 0.316 3.684 10 O -0.444 6.444 11 N -0.321 5.321 12 C 0.118 3.882 13 C -0.574 4.574 14 H 0.082 0.918 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.037 3.963 22 C -0.148 4.148 23 C -0.086 4.086 24 C -0.199 4.199 25 C -0.069 4.069 26 N -0.200 5.200 27 C -0.039 4.039 28 C -0.196 4.196 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.164 0.836 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.154 0.846 43 H 0.148 0.852 44 H 0.166 0.834 45 H 0.176 0.824 46 H 0.142 0.858 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.166 -4.389 -3.207 6.849 hybrid contribution -2.562 0.930 0.702 2.815 sum 1.604 -3.458 -2.505 4.561 Atomic orbital electron populations 1.21778 0.95512 1.01230 1.01511 1.21081 0.95416 0.99812 0.94200 0.90882 1.22373 0.97884 1.00647 0.98354 1.21992 0.92622 0.99688 0.92606 1.60452 1.63123 1.06087 1.00587 1.21389 0.94834 0.98572 0.88360 0.87979 1.20320 0.77049 0.86547 0.84441 1.90555 1.51164 1.17308 1.85389 1.48189 1.62013 1.14811 1.07112 1.19473 0.95328 0.74938 0.98496 1.21411 0.94488 0.92621 1.48922 0.91768 1.24907 0.98227 0.95492 0.94799 1.69915 1.36387 0.97736 1.48225 0.86625 0.84968 0.77862 0.78902 1.20467 1.20999 1.19559 1.20107 0.87616 0.98669 0.89861 1.21435 0.98424 0.96237 0.98707 1.21625 0.95053 0.96187 0.95737 1.22088 0.94632 1.00894 1.02310 1.22692 1.00171 0.90502 0.93536 1.67713 1.13415 1.22383 1.16516 1.22844 0.88243 0.98067 0.94707 1.22561 0.94280 1.01189 1.01535 0.93253 0.92266 0.93257 0.92010 0.92341 0.91013 0.91088 0.83577 0.94728 0.94317 0.92413 0.89266 0.89769 0.84600 0.85153 0.83353 0.82439 0.85835 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.20 37.16 0.34 -1.71 16 2 C -0.09 -1.33 2.79 -90.50 -0.25 -1.58 16 3 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.15 -2.01 5.36 -26.65 -0.14 -2.15 16 5 C 0.06 0.84 6.55 -3.83 -0.03 0.81 16 6 N -0.67 -11.17 6.28 -107.99 -0.68 -11.85 16 7 C 0.08 1.49 2.09 -68.88 -0.14 1.35 16 8 H 0.10 2.02 6.31 -51.93 -0.33 1.69 16 9 C 0.53 10.64 6.92 -10.99 -0.08 10.56 16 10 O -0.56 -12.07 15.36 5.56 0.09 -11.98 16 11 N -0.59 -11.67 2.44 -176.44 -0.43 -12.10 16 12 C 0.24 5.20 4.88 -5.19 -0.03 5.17 16 13 C -0.54 -12.55 6.65 -34.44 -0.23 -12.78 16 14 H 0.06 1.54 7.56 -52.48 -0.40 1.14 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -22.72 13.29 55.43 0.74 -21.98 16 17 Si 0.89 19.21 29.54 -169.99 -5.02 14.19 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 C 0.16 2.82 5.56 -5.20 -0.03 2.79 16 22 C -0.14 -2.41 5.48 -104.48 -0.57 -2.98 16 23 C -0.06 -0.90 9.86 -39.27 -0.39 -1.29 16 24 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 25 C 0.09 1.24 11.18 -17.55 -0.20 1.05 16 26 N -0.49 -8.27 10.36 -13.25 -0.14 -8.40 16 27 C 0.12 2.04 10.86 -17.55 -0.19 1.85 16 28 C -0.16 -2.78 4.56 -26.65 -0.12 -2.91 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.35 5.76 8.31 -39.29 -0.33 5.44 16 37 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 38 H 0.04 0.91 5.94 -51.93 -0.31 0.60 16 39 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.09 1.49 8.03 -51.93 -0.42 1.08 16 41 H 0.08 1.46 7.37 -51.93 -0.38 1.07 16 42 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 45 H 0.16 2.78 7.64 -52.49 -0.40 2.38 16 46 H 0.12 2.54 4.55 -51.93 -0.24 2.30 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -26.73 375.65 -9.75 -36.49 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -7.42 Total: 13.01 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.55 Total: -3.04 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.51 Total: -54.33 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -26.73 -9.75 -36.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126057422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.520 kcal (2) G-P(sol) polarization free energy of solvation -26.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds