Wall clock time and date at job start Fri Apr 10 2020 23:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.52364 * 2 1 4 4 C 1.53119 * 109.51815 * 239.87573 * 2 1 3 5 5 C 1.53044 * 109.27589 * 182.37818 * 4 2 1 6 6 N 1.46847 * 109.51335 * 59.18419 * 5 4 2 7 7 C 1.46847 * 111.20163 * 298.24410 * 6 5 4 8 8 H 1.08999 * 109.45820 * 301.75158 * 7 6 5 9 9 C 1.50691 * 109.46516 * 181.76712 * 7 6 5 10 10 O 1.21282 * 120.00004 * 339.95726 * 9 7 6 11 11 N 1.34778 * 120.00009 * 159.95490 * 9 7 6 12 12 C 1.46502 * 120.00146 * 0.02562 * 11 9 7 13 13 C 1.50701 * 109.46909 * 89.99992 * 12 11 9 14 14 H 1.08008 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00260 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99778 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00549 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47001 * 89.99684 * 17 15 13 19 19 H 1.48497 * 109.47542 * 210.00306 * 17 15 13 20 20 H 1.48502 * 109.46914 * 329.99975 * 17 15 13 21 21 C 1.46498 * 120.00009 * 180.02562 * 11 9 7 22 22 C 1.50694 * 109.47328 * 90.00089 * 21 11 9 23 23 C 1.38677 * 120.41937 * 89.99716 * 22 21 11 24 24 C 1.38631 * 118.42155 * 179.97438 * 23 22 21 25 25 C 1.38223 * 119.16148 * 0.02562 * 24 23 22 26 26 N 1.31860 * 120.76675 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.71987 * 359.70754 * 26 25 24 28 28 C 1.53041 * 109.51486 * 61.75514 * 7 6 5 29 29 H 1.08991 * 109.47616 * 180.12018 * 1 2 3 30 30 H 1.09002 * 109.47141 * 300.12655 * 1 2 3 31 31 H 1.09001 * 109.46958 * 60.11968 * 1 2 3 32 32 H 1.09000 * 109.50507 * 62.44483 * 4 2 1 33 33 H 1.08996 * 109.50916 * 302.31799 * 4 2 1 34 34 H 1.09002 * 109.46396 * 179.19729 * 5 4 2 35 35 H 1.08994 * 109.46485 * 299.17654 * 5 4 2 36 36 H 1.00902 * 110.99979 * 62.35429 * 6 5 4 37 37 H 1.08992 * 109.47354 * 210.00030 * 12 11 9 38 38 H 1.09001 * 109.46918 * 330.00429 * 12 11 9 39 39 H 0.96995 * 120.00142 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47262 * 209.99740 * 21 11 9 41 41 H 1.08997 * 109.47154 * 329.99992 * 21 11 9 42 42 H 1.08004 * 120.78901 * 0.02703 * 23 22 21 43 43 H 1.07992 * 120.41886 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.61984 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.61855 * 180.31124 * 27 26 25 46 46 H 1.08996 * 109.50341 * 180.87808 * 28 7 6 47 47 H 1.08996 * 109.50165 * 60.75338 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5709 -0.7731 -1.2130 6 7 4.0113 -1.4769 -0.0017 7 6 3.5721 -0.7738 1.2104 8 1 3.9678 0.2418 1.2045 9 6 4.0807 -1.5039 2.4266 10 8 4.4158 -2.6662 2.3400 11 7 4.1632 -0.8651 3.6105 12 6 3.7579 0.5388 3.7152 13 6 2.2934 0.6143 4.0625 14 1 1.7216 -0.2929 4.1918 15 6 1.6831 1.8413 4.2141 16 7 2.3791 2.9459 4.0552 17 14 -0.1323 1.9349 4.6438 18 1 -0.2913 1.9515 6.1201 19 1 -0.7138 3.1747 4.0693 20 1 -0.8352 0.7528 4.0835 21 6 4.6582 -1.5748 4.7927 22 6 6.1534 -1.4122 4.8868 23 6 6.7013 -0.3476 5.5864 24 6 8.0820 -0.2384 5.6469 25 6 8.8611 -1.1873 5.0119 26 7 8.3054 -2.1868 4.3554 27 6 6.9959 -2.3255 4.2822 28 6 2.0430 -0.7249 1.2474 29 1 -0.3634 -1.0275 0.0022 30 1 -0.3633 0.5158 0.8889 31 1 -0.3633 0.5120 -0.8911 32 1 1.7152 -0.1883 -2.1395 33 1 1.6455 -1.7396 -1.2680 34 1 3.9378 -1.3008 -2.0933 35 1 3.9666 0.2424 -1.2070 36 1 3.6894 -2.4332 -0.0019 37 1 4.3418 1.0284 4.4946 38 1 3.9317 1.0391 2.7625 39 1 1.9497 3.8091 4.1614 40 1 4.1909 -1.1616 5.6866 41 1 4.4123 -2.6334 4.7104 42 1 6.0674 0.3787 6.0734 43 1 8.5430 0.5776 6.1833 44 1 9.9374 -1.1096 5.0546 45 1 6.5771 -3.1601 3.7396 46 1 1.7174 -0.1894 2.1391 47 1 1.6468 -1.7402 1.2668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126057422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:07 Heat of formation + Delta-G solvation = -27.893517 kcal Electronic energy + Delta-G solvation = -27888.572785 eV Core-core repulsion = 24262.736262 eV Total energy + Delta-G solvation = -3625.836523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54990 -40.81060 -39.07290 -36.92665 -34.84677 -34.23138 -33.58977 -32.75640 -31.73383 -29.32650 -28.09866 -27.52153 -25.09557 -24.60636 -24.31060 -23.44990 -22.69078 -21.12539 -19.94873 -18.59990 -18.14530 -17.87158 -17.41714 -17.06323 -16.59184 -16.38703 -16.02950 -15.78066 -15.34532 -15.06721 -15.00022 -14.72731 -14.56565 -14.27865 -14.03364 -13.97657 -13.78272 -13.68896 -13.37330 -13.08465 -12.90941 -12.69773 -12.54182 -12.47567 -12.42025 -12.35097 -12.10957 -11.99962 -11.72142 -11.56357 -11.28642 -10.83372 -10.59619 -10.52223 -10.41439 -9.93343 -9.48561 -9.25659 -8.18456 -6.28714 0.13902 0.34308 1.40132 1.44713 1.51467 1.76005 2.23760 2.43382 2.94342 3.11790 3.39876 3.54703 3.64581 3.83277 3.90989 3.91388 4.03872 4.08174 4.11877 4.16832 4.23663 4.30142 4.48150 4.49883 4.68663 4.69475 4.76276 4.78726 4.82603 4.86804 4.88667 4.92853 5.04511 5.08001 5.15703 5.19058 5.26433 5.30919 5.37239 5.45429 5.49538 5.65680 5.78899 5.81385 6.05485 6.07807 6.44759 6.55983 6.82445 7.02167 7.31138 7.42646 8.87072 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.005603 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.660577 B = 4996.483567 C = 7011.074895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.058 0.942 4 C -0.143 4.143 5 C 0.059 3.941 6 N -0.679 5.679 7 C 0.089 3.911 8 H 0.085 0.915 9 C 0.521 3.479 10 O -0.579 6.579 11 N -0.592 5.592 12 C 0.256 3.744 13 C -0.530 4.530 14 H 0.057 0.943 15 C 0.033 3.967 16 N -0.914 5.914 17 Si 0.940 3.060 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.268 1.268 21 C 0.162 3.838 22 C -0.156 4.156 23 C -0.069 4.069 24 C -0.168 4.168 25 C 0.088 3.912 26 N -0.513 5.513 27 C 0.104 3.896 28 C -0.148 4.148 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.346 0.654 37 H 0.024 0.976 38 H 0.022 0.978 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.141 0.859 43 H 0.167 0.833 44 H 0.186 0.814 45 H 0.144 0.856 46 H 0.094 0.906 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -3.500 -3.328 5.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.077 0.923 4 C -0.182 4.182 5 C -0.070 4.070 6 N -0.310 5.310 7 C -0.024 4.024 8 H 0.103 0.897 9 C 0.310 3.690 10 O -0.460 6.460 11 N -0.321 5.321 12 C 0.135 3.865 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.169 4.169 16 N -0.553 5.553 17 Si 0.766 3.234 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.193 1.193 21 C 0.039 3.961 22 C -0.159 4.159 23 C -0.095 4.095 24 C -0.187 4.187 25 C -0.069 4.069 26 N -0.222 5.222 27 C -0.052 4.052 28 C -0.188 4.188 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.164 0.836 37 H 0.042 0.958 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.159 0.841 43 H 0.185 0.815 44 H 0.203 0.797 45 H 0.161 0.839 46 H 0.112 0.888 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.342 -4.223 -3.778 7.139 hybrid contribution -2.515 0.866 0.901 2.809 sum 1.827 -3.357 -2.877 4.784 Atomic orbital electron populations 1.21750 0.94473 1.01830 1.01649 1.21074 0.96294 0.98923 0.94212 0.92333 1.22280 0.97076 1.00981 0.97819 1.22118 0.93304 0.99508 0.92042 1.60451 1.63528 1.06181 1.00813 1.21222 0.95050 0.97480 0.88639 0.89749 1.20698 0.76790 0.86539 0.84992 1.90538 1.51876 1.17907 1.85685 1.48174 1.61955 1.14083 1.07928 1.19103 0.94493 0.75881 0.97025 1.21482 0.95046 0.92256 1.48016 0.92492 1.25458 1.01255 0.95254 0.94891 1.69998 1.37691 0.98080 1.49542 0.85816 0.81291 0.77717 0.78537 1.20284 1.20969 1.19270 1.20162 0.88669 0.98212 0.89098 1.21288 0.97512 0.97176 0.99913 1.21811 0.96342 0.95754 0.95611 1.22469 0.93651 1.01314 1.01274 1.23345 1.02000 0.89448 0.92154 1.67710 1.13023 1.23859 1.17590 1.22656 0.88849 0.98200 0.95515 1.22414 0.93814 1.00834 1.01706 0.92397 0.94220 0.91042 0.89584 0.91625 0.88507 0.91547 0.83556 0.95829 0.95974 0.92447 0.88828 0.90028 0.84148 0.81517 0.79724 0.83908 0.88771 0.93188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.20 71.98 0.66 -3.15 16 2 C -0.09 -2.59 2.79 -10.71 -0.03 -2.62 16 3 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.14 -3.41 5.36 30.65 0.16 -3.25 16 5 C 0.06 1.53 6.55 86.33 0.57 2.10 16 6 N -0.68 -22.32 6.28 -495.56 -3.11 -25.43 16 7 C 0.09 3.34 2.09 44.19 0.09 3.44 16 8 H 0.08 3.47 6.31 -2.39 -0.02 3.46 16 9 C 0.52 21.58 6.92 87.65 0.61 22.19 16 10 O -0.58 -25.37 15.36 -3.03 -0.05 -25.42 16 11 N -0.59 -24.11 2.44 -830.53 -2.03 -26.14 16 12 C 0.26 11.54 4.88 85.63 0.42 11.96 16 13 C -0.53 -25.31 6.65 25.60 0.17 -25.14 16 14 H 0.06 2.78 7.56 -2.91 -0.02 2.76 16 15 C 0.03 1.60 5.46 84.65 0.46 2.06 16 16 N -0.91 -47.51 13.29 21.45 0.28 -47.22 16 17 Si 0.94 39.54 29.54 68.60 2.03 41.57 16 18 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 21 C 0.16 5.83 5.56 85.63 0.48 6.31 16 22 C -0.16 -5.26 5.48 -19.77 -0.11 -5.36 16 23 C -0.07 -2.04 9.86 22.47 0.22 -1.81 16 24 C -0.17 -4.10 10.11 22.36 0.23 -3.88 16 25 C 0.09 2.27 11.18 84.69 0.95 3.22 16 26 N -0.51 -16.91 10.36 -195.84 -2.03 -18.94 16 27 C 0.10 3.66 10.86 84.67 0.92 4.58 16 28 C -0.15 -5.34 4.56 30.65 0.14 -5.20 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.35 11.34 8.31 -89.69 -0.75 10.59 16 37 H 0.02 1.12 8.07 -2.39 -0.02 1.10 16 38 H 0.02 1.08 5.94 -2.39 -0.01 1.07 16 39 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 40 H 0.09 3.21 8.03 -2.39 -0.02 3.20 16 41 H 0.08 2.94 7.37 -2.39 -0.02 2.92 16 42 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 43 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.19 3.33 8.06 -2.91 -0.02 3.30 16 45 H 0.14 5.30 7.64 -2.91 -0.02 5.28 16 46 H 0.09 3.98 4.55 -2.39 -0.01 3.97 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -57.94 375.65 1.25 -56.69 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: 0.22 Total: 39.46 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.93 Total: 5.43 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -6.88 Total: -117.73 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -57.94 1.25 -56.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126057422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.800 kcal (2) G-P(sol) polarization free energy of solvation -57.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds