Wall clock time and date at job start Fri Apr 10 2020 23:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.00667 * 2 1 4 4 C 1.46653 * 109.95190 * 121.22901 * 2 1 3 5 5 C 1.52478 * 114.11052 * 177.50943 * 4 2 1 6 6 N 1.43914 * 105.41148 * 269.63777 * 5 4 2 7 7 C 1.46901 * 111.00319 * 223.42696 * 6 5 4 8 8 C 1.48827 * 112.04164 * 98.70805 * 6 5 4 9 9 C 1.54533 * 110.68526 * 320.99955 * 8 6 5 10 10 N 1.43662 * 116.16332 * 318.28138 * 9 8 6 11 11 C 1.34775 * 120.55444 * 269.16805 * 10 9 8 12 12 O 1.21589 * 119.99831 * 174.06801 * 11 10 9 13 13 N 1.34769 * 119.99897 * 354.06317 * 11 10 9 14 14 C 1.39956 * 120.00010 * 184.34534 * 13 11 10 15 15 C 1.39285 * 119.94638 * 324.51446 * 14 13 11 16 16 C 1.38488 * 120.43158 * 179.76174 * 15 14 13 17 17 C 1.37685 * 120.32090 * 0.51773 * 16 15 14 18 18 C 1.40753 * 119.88148 * 359.74565 * 17 16 15 19 19 C 1.41408 * 120.20675 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99416 * 214.03533 * 19 18 17 21 21 C 1.39931 * 120.00027 * 34.04468 * 19 18 17 22 22 N 1.30824 * 120.00296 * 5.65712 * 21 19 18 23 23 Si 1.86794 * 119.99662 * 185.65941 * 21 19 18 24 24 H 1.48505 * 109.47488 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47471 * 119.99610 * 23 21 19 26 26 H 1.48503 * 109.47370 * 239.99754 * 23 21 19 27 27 C 1.38234 * 119.94852 * 144.79908 * 14 13 11 28 28 H 1.09006 * 109.47288 * 187.76172 * 1 2 3 29 29 H 1.09007 * 109.47355 * 307.75511 * 1 2 3 30 30 H 1.08996 * 109.47642 * 67.75567 * 1 2 3 31 31 H 1.09000 * 108.55154 * 298.70142 * 4 2 1 32 32 H 1.08993 * 108.55486 * 56.45772 * 4 2 1 33 33 H 1.09004 * 110.24381 * 150.67282 * 5 4 2 34 34 H 1.08998 * 110.25094 * 28.61453 * 5 4 2 35 35 H 1.08997 * 109.47307 * 290.74251 * 7 6 5 36 36 H 1.08996 * 109.47361 * 170.73835 * 7 6 5 37 37 H 1.09000 * 109.46717 * 50.73668 * 7 6 5 38 38 H 1.09005 * 109.23214 * 81.31212 * 8 6 5 39 39 H 1.09000 * 109.23237 * 200.68637 * 8 6 5 40 40 H 1.08996 * 108.14311 * 80.01911 * 9 8 6 41 41 H 1.08994 * 108.14193 * 196.54820 * 9 8 6 42 42 H 0.97001 * 120.00514 * 4.34579 * 13 11 10 43 43 H 1.08003 * 119.78420 * 0.03023 * 15 14 13 44 44 H 1.08000 * 119.84433 * 180.23731 * 16 15 14 45 45 H 1.07997 * 120.06632 * 179.76163 * 17 16 15 46 46 H 0.97001 * 120.00091 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.16170 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0303 -0.7147 1.1788 5 6 3.5499 -0.8240 1.2423 6 7 3.8737 -2.0517 0.5648 7 6 4.8922 -2.8086 1.3049 8 6 4.3004 -1.8177 -0.8416 9 6 3.4505 -0.7026 -1.4915 10 7 2.0426 -0.7322 -1.2076 11 6 1.1957 -1.4061 -2.0108 12 8 0.0243 -1.5156 -1.7039 13 7 1.6473 -1.9586 -3.1541 14 6 0.7520 -2.5795 -4.0325 15 6 -0.3396 -3.2837 -3.5300 16 6 -1.2345 -3.8977 -4.3903 17 6 -1.0486 -3.8276 -5.7527 18 6 0.0530 -3.1241 -6.2749 19 6 0.2503 -3.0473 -7.6730 20 1 1.2518 -3.0316 -8.0769 21 6 -0.8521 -2.9913 -8.5331 22 7 -2.0610 -2.8984 -8.0418 23 14 -0.5974 -3.0494 -10.3827 24 1 0.8539 -3.1539 -10.6796 25 1 -1.3039 -4.2293 -10.9429 26 1 -1.1396 -1.8105 -10.9962 27 6 0.9558 -2.4979 -5.3973 28 1 -0.3634 -1.0183 0.1388 29 1 -0.3634 0.6293 0.8125 30 1 -0.3634 0.3890 -0.9511 31 1 1.6822 -0.1964 2.0722 32 1 1.6120 -1.7212 1.1776 33 1 3.8819 -0.8667 2.2797 34 1 4.0106 0.0216 0.7318 35 1 5.8454 -2.2826 1.2524 36 1 4.9995 -3.7999 0.8646 37 1 4.5874 -2.9050 2.3469 38 1 5.3497 -1.5230 -0.8542 39 1 4.1800 -2.7391 -1.4114 40 1 3.8431 0.2592 -1.1616 41 1 3.5801 -0.7632 -2.5720 42 1 2.5928 -1.9259 -3.3682 43 1 -0.4916 -3.3476 -2.4627 44 1 -2.0798 -4.4381 -3.9905 45 1 -1.7469 -4.3113 -6.4197 46 1 -2.8252 -2.8600 -8.6381 47 1 1.8042 -1.9556 -5.7878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334726289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:16 Heat of formation + Delta-G solvation = 30.419247 kcal Electronic energy + Delta-G solvation = -27299.532412 eV Core-core repulsion = 23676.224521 eV Total energy + Delta-G solvation = -3623.307891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71186 -38.66275 -37.22319 -35.40492 -34.63689 -33.61237 -32.50462 -29.72686 -29.40564 -29.03550 -27.64970 -25.21144 -25.07304 -23.95549 -22.71917 -21.01533 -20.77093 -20.42201 -19.16383 -17.59657 -17.29112 -16.52438 -15.80181 -15.63614 -15.29191 -15.10391 -14.87658 -14.45168 -14.38036 -13.92053 -13.58078 -13.27368 -13.18676 -12.84597 -12.73329 -12.62241 -12.19795 -12.15134 -11.92796 -11.67658 -11.58101 -11.41728 -11.28472 -11.10565 -11.06296 -10.93334 -10.83939 -10.72235 -10.36892 -9.97359 -9.42830 -9.26183 -9.06076 -8.62993 -8.50985 -8.42110 -7.30886 -6.78631 -6.54536 -4.30367 2.74401 2.88813 2.99332 3.13862 3.18406 3.27837 3.70237 3.76140 4.03051 4.23767 4.66212 4.71637 4.73319 4.79953 4.84109 5.03897 5.11494 5.13424 5.25164 5.32136 5.42790 5.53820 5.63870 5.66316 5.67399 5.72844 5.77797 5.89998 6.18439 6.34483 6.40253 6.49525 6.65453 6.78942 6.81371 6.90053 6.97554 7.02383 7.04832 7.13969 7.32337 7.43937 7.74029 7.88865 8.13762 8.16816 8.33948 8.50581 8.72304 8.98918 9.02545 9.14562 10.38902 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.003017 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.347360 B = 9277.397367 C = 9728.215283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.171 3.829 3 H 0.069 0.931 4 C -0.135 4.135 5 C 0.057 3.943 6 N -0.538 5.538 7 C 0.025 3.975 8 C 0.034 3.966 9 C 0.111 3.889 10 N -0.620 5.620 11 C 0.707 3.293 12 O -0.563 6.563 13 N -0.682 5.682 14 C 0.163 3.837 15 C -0.212 4.212 16 C -0.102 4.102 17 C -0.156 4.156 18 C 0.122 3.878 19 C -0.472 4.472 20 H 0.074 0.926 21 C 0.073 3.927 22 N -0.811 5.811 23 Si 0.910 3.090 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.276 1.276 27 C -0.236 4.236 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.392 0.608 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.277 0.723 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.577 4.931 15.599 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.069 3.931 3 H 0.087 0.913 4 C -0.174 4.174 5 C -0.072 4.072 6 N -0.262 5.262 7 C -0.124 4.124 8 C -0.096 4.096 9 C -0.016 4.016 10 N -0.358 5.358 11 C 0.410 3.590 12 O -0.439 6.439 13 N -0.329 5.329 14 C 0.071 3.929 15 C -0.234 4.234 16 C -0.121 4.121 17 C -0.176 4.176 18 C 0.119 3.881 19 C -0.503 4.503 20 H 0.093 0.907 21 C -0.142 4.142 22 N -0.438 5.438 23 Si 0.735 3.265 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.202 1.202 27 C -0.258 4.258 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.227 0.773 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.135 0.865 46 H 0.087 0.913 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.043 4.641 15.750 19.788 hybrid contribution 1.461 0.571 -0.989 1.855 sum 12.504 5.212 14.761 20.035 Atomic orbital electron populations 1.22140 0.92069 1.03884 1.01348 1.20480 0.96170 0.93636 0.82774 0.91285 1.20998 0.95533 1.03065 0.97756 1.21642 0.96323 0.91175 0.98032 1.61828 1.41988 1.20567 1.01841 1.22472 0.92624 0.98621 0.98642 1.23358 0.96681 1.00035 0.89479 1.21023 0.82448 0.98239 0.99848 1.47324 1.05093 1.54832 1.28553 1.15901 0.84838 0.78258 0.80000 1.90934 1.15808 1.63798 1.73379 1.42843 1.10363 1.59125 1.20596 1.17270 0.92068 0.95627 0.87923 1.20535 0.98475 1.05578 0.98778 1.20646 0.97652 0.99739 0.94055 1.21388 1.00905 1.02127 0.93170 1.17364 0.90182 0.87758 0.92773 1.19464 0.93583 1.46415 0.90836 0.90740 1.25811 0.94704 0.92634 1.01035 1.69796 0.99103 1.37882 1.36997 0.86242 0.79463 0.78351 0.82420 1.18691 1.19976 1.20175 1.20809 1.05341 1.09225 0.90414 0.89796 0.94054 0.91431 0.91615 0.89819 0.91309 0.93439 0.95875 0.91458 0.91472 0.93289 0.90355 0.91257 0.90746 0.77294 0.87307 0.89095 0.86489 0.91259 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.64 37.15 0.28 -1.63 16 2 C 0.17 2.03 3.19 -68.87 -0.22 1.81 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.39 4.57 -30.03 -0.14 -1.52 16 5 C 0.06 0.50 5.50 -5.68 -0.03 0.47 16 6 N -0.54 -5.43 4.27 -243.05 -1.04 -6.47 16 7 C 0.02 0.20 9.44 60.07 0.57 0.77 16 8 C 0.03 0.32 6.08 -1.95 -0.01 0.31 16 9 C 0.11 1.14 4.80 -4.74 -0.02 1.12 16 10 N -0.62 -8.46 2.71 -173.53 -0.47 -8.93 16 11 C 0.71 12.93 7.95 -86.93 -0.69 12.23 16 12 O -0.56 -12.12 9.57 5.29 0.05 -12.07 16 13 N -0.68 -12.68 5.19 -14.27 -0.07 -12.76 16 14 C 0.16 3.78 6.28 -83.76 -0.53 3.25 16 15 C -0.21 -5.18 8.70 -39.10 -0.34 -5.52 16 16 C -0.10 -2.54 10.02 -39.69 -0.40 -2.93 16 17 C -0.16 -4.18 8.63 -38.83 -0.33 -4.52 16 18 C 0.12 3.30 5.50 -106.84 -0.59 2.71 16 19 C -0.47 -12.70 9.04 -37.74 -0.34 -13.04 16 20 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 21 C 0.07 1.89 5.31 -17.35 -0.09 1.80 16 22 N -0.81 -21.78 10.95 55.55 0.61 -21.17 16 23 Si 0.91 19.24 29.56 -169.99 -5.03 14.21 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 C -0.24 -5.80 9.71 -38.69 -0.38 -6.18 16 28 H 0.08 1.39 6.50 -51.93 -0.34 1.05 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.12 7.07 -51.93 -0.37 0.76 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 33 H 0.07 0.51 7.44 -51.93 -0.39 0.13 16 34 H 0.05 0.38 6.13 -51.93 -0.32 0.07 16 35 H 0.02 0.16 8.01 -51.93 -0.42 -0.25 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 38 H 0.05 0.38 7.91 -51.93 -0.41 -0.03 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.59 6.89 -51.93 -0.36 0.23 16 41 H 0.07 0.74 6.15 -51.93 -0.32 0.42 16 42 H 0.39 6.00 6.54 -40.82 -0.27 5.73 16 43 H 0.11 2.66 6.24 -52.48 -0.33 2.34 16 44 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.12 3.23 6.45 -52.49 -0.34 2.89 16 46 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 47 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -31.01 359.85 -10.95 -41.96 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.16 Total: 10.69 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.26 Total: -10.88 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.97 Total: -49.33 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.05 Total: -12.07 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.01 -10.95 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.380 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds