Wall clock time and date at job start Fri Apr 10 2020 23:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.00667 * 2 1 4 4 C 1.46653 * 109.95190 * 121.22901 * 2 1 3 5 5 C 1.52478 * 114.11052 * 177.50943 * 4 2 1 6 6 N 1.43914 * 105.41148 * 269.63777 * 5 4 2 7 7 C 1.46901 * 111.00319 * 223.42696 * 6 5 4 8 8 C 1.48827 * 112.04164 * 98.70805 * 6 5 4 9 9 C 1.54533 * 110.68526 * 320.99955 * 8 6 5 10 10 N 1.43662 * 116.16332 * 318.28138 * 9 8 6 11 11 C 1.34775 * 120.55444 * 269.16805 * 10 9 8 12 12 O 1.21589 * 119.99831 * 174.06801 * 11 10 9 13 13 N 1.34769 * 119.99897 * 354.06317 * 11 10 9 14 14 C 1.39956 * 120.00010 * 184.34534 * 13 11 10 15 15 C 1.39285 * 119.94638 * 324.51446 * 14 13 11 16 16 C 1.38488 * 120.43158 * 179.76174 * 15 14 13 17 17 C 1.37685 * 120.32090 * 0.51773 * 16 15 14 18 18 C 1.40753 * 119.88148 * 359.74565 * 17 16 15 19 19 C 1.41408 * 120.20675 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99416 * 214.03533 * 19 18 17 21 21 C 1.39931 * 120.00027 * 34.04468 * 19 18 17 22 22 N 1.30824 * 120.00296 * 5.65712 * 21 19 18 23 23 Si 1.86794 * 119.99662 * 185.65941 * 21 19 18 24 24 H 1.48505 * 109.47488 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47471 * 119.99610 * 23 21 19 26 26 H 1.48503 * 109.47370 * 239.99754 * 23 21 19 27 27 C 1.38234 * 119.94852 * 144.79908 * 14 13 11 28 28 H 1.09006 * 109.47288 * 187.76172 * 1 2 3 29 29 H 1.09007 * 109.47355 * 307.75511 * 1 2 3 30 30 H 1.08996 * 109.47642 * 67.75567 * 1 2 3 31 31 H 1.09000 * 108.55154 * 298.70142 * 4 2 1 32 32 H 1.08993 * 108.55486 * 56.45772 * 4 2 1 33 33 H 1.09004 * 110.24381 * 150.67282 * 5 4 2 34 34 H 1.08998 * 110.25094 * 28.61453 * 5 4 2 35 35 H 1.08997 * 109.47307 * 290.74251 * 7 6 5 36 36 H 1.08996 * 109.47361 * 170.73835 * 7 6 5 37 37 H 1.09000 * 109.46717 * 50.73668 * 7 6 5 38 38 H 1.09005 * 109.23214 * 81.31212 * 8 6 5 39 39 H 1.09000 * 109.23237 * 200.68637 * 8 6 5 40 40 H 1.08996 * 108.14311 * 80.01911 * 9 8 6 41 41 H 1.08994 * 108.14193 * 196.54820 * 9 8 6 42 42 H 0.97001 * 120.00514 * 4.34579 * 13 11 10 43 43 H 1.08003 * 119.78420 * 0.03023 * 15 14 13 44 44 H 1.08000 * 119.84433 * 180.23731 * 16 15 14 45 45 H 1.07997 * 120.06632 * 179.76163 * 17 16 15 46 46 H 0.97001 * 120.00091 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.16170 * 359.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0303 -0.7147 1.1788 5 6 3.5499 -0.8240 1.2423 6 7 3.8737 -2.0517 0.5648 7 6 4.8922 -2.8086 1.3049 8 6 4.3004 -1.8177 -0.8416 9 6 3.4505 -0.7026 -1.4915 10 7 2.0426 -0.7322 -1.2076 11 6 1.1957 -1.4061 -2.0108 12 8 0.0243 -1.5156 -1.7039 13 7 1.6473 -1.9586 -3.1541 14 6 0.7520 -2.5795 -4.0325 15 6 -0.3396 -3.2837 -3.5300 16 6 -1.2345 -3.8977 -4.3903 17 6 -1.0486 -3.8276 -5.7527 18 6 0.0530 -3.1241 -6.2749 19 6 0.2503 -3.0473 -7.6730 20 1 1.2518 -3.0316 -8.0769 21 6 -0.8521 -2.9913 -8.5331 22 7 -2.0610 -2.8984 -8.0418 23 14 -0.5974 -3.0494 -10.3827 24 1 0.8539 -3.1539 -10.6796 25 1 -1.3039 -4.2293 -10.9429 26 1 -1.1396 -1.8105 -10.9962 27 6 0.9558 -2.4979 -5.3973 28 1 -0.3634 -1.0183 0.1388 29 1 -0.3634 0.6293 0.8125 30 1 -0.3634 0.3890 -0.9511 31 1 1.6822 -0.1964 2.0722 32 1 1.6120 -1.7212 1.1776 33 1 3.8819 -0.8667 2.2797 34 1 4.0106 0.0216 0.7318 35 1 5.8454 -2.2826 1.2524 36 1 4.9995 -3.7999 0.8646 37 1 4.5874 -2.9050 2.3469 38 1 5.3497 -1.5230 -0.8542 39 1 4.1800 -2.7391 -1.4114 40 1 3.8431 0.2592 -1.1616 41 1 3.5801 -0.7632 -2.5720 42 1 2.5928 -1.9259 -3.3682 43 1 -0.4916 -3.3476 -2.4627 44 1 -2.0798 -4.4381 -3.9905 45 1 -1.7469 -4.3113 -6.4197 46 1 -2.8252 -2.8600 -8.6381 47 1 1.8042 -1.9556 -5.7878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334726289.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:15 Heat of formation + Delta-G solvation = 11.803414 kcal Electronic energy + Delta-G solvation = -27300.339655 eV Core-core repulsion = 23676.224521 eV Total energy + Delta-G solvation = -3624.115135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95016 -39.94032 -38.79853 -36.63598 -35.99738 -35.23339 -33.94790 -31.71143 -30.31751 -30.20732 -29.17928 -27.12503 -25.95898 -24.82644 -24.02167 -22.86568 -22.28076 -21.36730 -20.65133 -19.34549 -18.50915 -17.66701 -17.23974 -16.89619 -16.62688 -16.40140 -16.17178 -15.91128 -15.63653 -15.23186 -14.88809 -14.62067 -14.45116 -14.10418 -13.98419 -13.79041 -13.59777 -13.50422 -13.12713 -12.91926 -12.88249 -12.83001 -12.70661 -12.57176 -12.28327 -12.13476 -12.00604 -11.83420 -11.79596 -11.59508 -11.36526 -11.13497 -10.81118 -10.19859 -9.60995 -9.30467 -9.13457 -8.66453 -8.47208 -6.35634 0.98392 1.00066 1.41320 1.51929 1.56473 1.64514 2.24842 2.26364 2.84734 2.93897 3.07910 3.71560 3.84261 3.90203 3.97860 4.04494 4.24738 4.37310 4.41987 4.44851 4.47012 4.61722 4.70699 4.71998 4.74894 4.82974 4.84113 4.94903 4.95800 5.04135 5.05396 5.07077 5.17379 5.19650 5.20796 5.37793 5.45707 5.49471 5.74658 5.80298 5.84039 6.04301 6.13378 6.14116 6.21095 6.36154 6.41341 6.72140 6.98558 7.01281 7.09255 7.67741 8.46704 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.003017 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.347360 B = 9277.397367 C = 9728.215283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.168 3.832 3 H 0.102 0.898 4 C -0.128 4.128 5 C 0.062 3.938 6 N -0.565 5.565 7 C 0.027 3.973 8 C 0.038 3.962 9 C 0.101 3.899 10 N -0.610 5.610 11 C 0.700 3.300 12 O -0.602 6.602 13 N -0.676 5.676 14 C 0.177 3.823 15 C -0.223 4.223 16 C -0.104 4.104 17 C -0.182 4.182 18 C 0.096 3.904 19 C -0.502 4.502 20 H 0.079 0.921 21 C 0.028 3.972 22 N -0.845 5.845 23 Si 0.988 3.012 24 H -0.255 1.255 25 H -0.267 1.267 26 H -0.270 1.270 27 C -0.244 4.244 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.409 0.591 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.284 0.716 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.118 6.563 16.313 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 H 0.120 0.880 4 C -0.166 4.166 5 C -0.067 4.067 6 N -0.290 5.290 7 C -0.121 4.121 8 C -0.091 4.091 9 C -0.024 4.024 10 N -0.347 5.347 11 C 0.402 3.598 12 O -0.481 6.481 13 N -0.325 5.325 14 C 0.083 3.917 15 C -0.245 4.245 16 C -0.122 4.122 17 C -0.202 4.202 18 C 0.093 3.907 19 C -0.532 4.532 20 H 0.097 0.903 21 C -0.184 4.184 22 N -0.472 5.472 23 Si 0.809 3.191 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.195 1.195 27 C -0.266 4.266 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.247 0.753 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.119 0.881 46 H 0.094 0.906 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.654 6.294 16.518 22.336 hybrid contribution 0.679 0.105 -1.041 1.247 sum 14.333 6.399 15.477 22.044 Atomic orbital electron populations 1.21969 0.94039 1.02119 1.00566 1.20734 0.94660 0.95274 0.82573 0.87990 1.20915 0.96969 1.00980 0.97783 1.21647 0.94731 0.91110 0.99167 1.61761 1.43239 1.21653 1.02313 1.22453 0.92872 0.98132 0.98593 1.23290 0.97790 0.98860 0.89142 1.21324 0.80397 1.00220 1.00459 1.47410 1.06120 1.53271 1.27935 1.16165 0.84970 0.78488 0.80139 1.90928 1.17812 1.65169 1.74194 1.42673 1.10615 1.58892 1.20321 1.17255 0.91928 0.94282 0.88242 1.20626 0.99188 1.06167 0.98498 1.20840 0.98230 0.99577 0.93599 1.21300 1.01524 1.03766 0.93614 1.17733 0.90917 0.88275 0.93738 1.19767 0.94356 1.47782 0.91333 0.90267 1.26757 0.94000 0.91489 1.06116 1.69888 1.00104 1.38182 1.39070 0.85074 0.79736 0.78590 0.75712 1.17839 1.19196 1.19501 1.20950 1.05535 1.09335 0.90785 0.93115 0.91148 0.94675 0.89326 0.93306 0.89583 0.91882 0.94352 0.92334 0.90893 0.90687 0.92167 0.88202 0.90440 0.75312 0.87593 0.87506 0.88147 0.90611 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 7.64 71.98 0.55 -3.04 16 2 C 0.17 3.63 3.19 42.29 0.14 3.77 16 3 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.13 -2.32 4.57 28.46 0.13 -2.19 16 5 C 0.06 0.86 5.50 86.69 0.48 1.33 16 6 N -0.56 -10.00 4.27 -922.86 -3.94 -13.94 16 7 C 0.03 0.38 9.44 127.69 1.21 1.58 16 8 C 0.04 0.62 6.08 86.45 0.53 1.15 16 9 C 0.10 1.79 4.80 87.43 0.42 2.21 16 10 N -0.61 -15.74 2.71 -821.18 -2.23 -17.97 16 11 C 0.70 25.62 7.95 179.06 1.42 27.04 16 12 O -0.60 -26.77 9.57 -4.00 -0.04 -26.81 16 13 N -0.68 -25.04 5.19 -317.34 -1.65 -26.69 16 14 C 0.18 8.32 6.28 38.09 0.24 8.55 16 15 C -0.22 -11.24 8.70 22.58 0.20 -11.04 16 16 C -0.10 -5.35 10.02 22.20 0.22 -5.13 16 17 C -0.18 -10.18 8.63 22.75 0.20 -9.98 16 18 C 0.10 5.35 5.50 -21.30 -0.12 5.24 16 19 C -0.50 -27.53 9.04 23.46 0.21 -27.32 16 20 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 21 C 0.03 1.48 5.31 85.25 0.45 1.93 16 22 N -0.84 -46.49 10.95 21.82 0.24 -46.25 16 23 Si 0.99 39.43 29.56 68.60 2.03 41.46 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 26 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 27 C -0.24 -12.18 9.71 22.85 0.22 -11.96 16 28 H 0.05 1.74 6.50 -2.38 -0.02 1.73 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.03 1.18 7.07 -2.39 -0.02 1.17 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.26 7.78 -2.39 -0.02 1.24 16 33 H 0.09 0.93 7.44 -2.38 -0.02 0.91 16 34 H 0.06 0.70 6.13 -2.39 -0.01 0.69 16 35 H 0.04 0.41 8.01 -2.39 -0.02 0.39 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 0.90 7.83 -2.39 -0.02 0.88 16 38 H 0.08 0.86 7.91 -2.38 -0.02 0.85 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.23 6.89 -2.39 -0.02 1.21 16 41 H 0.08 1.34 6.15 -2.39 -0.01 1.32 16 42 H 0.41 12.12 6.54 -92.71 -0.61 11.51 16 43 H 0.11 5.38 6.24 -2.91 -0.02 5.36 16 44 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 45 H 0.10 5.85 6.45 -2.91 -0.02 5.83 16 46 H 0.28 14.19 8.30 -92.71 -0.77 13.42 16 47 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -70.82 359.85 1.27 -69.55 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.37 Total: 38.52 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.49 Total: -17.86 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -7.58 Total: -104.85 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.81 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -70.82 1.27 -69.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334726289.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.350 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds