Wall clock time and date at job start Fri Apr 10 2020 23:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47485 * 2 1 4 4 C 1.46500 * 120.00299 * 270.00398 * 3 2 1 5 5 C 1.50702 * 109.46992 * 270.00031 * 4 3 2 6 6 H 1.08006 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00205 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99932 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46928 * 90.00016 * 9 7 5 11 11 H 1.48492 * 109.47084 * 210.00251 * 9 7 5 12 12 H 1.48498 * 109.47329 * 330.00756 * 9 7 5 13 13 C 1.34773 * 119.99928 * 89.99417 * 3 2 1 14 14 O 1.21284 * 119.99890 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99976 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46959 * 185.41520 * 15 13 3 17 17 C 1.46709 * 111.00049 * 75.96142 * 16 15 13 18 18 C 1.53377 * 108.28301 * 75.42970 * 17 16 15 19 19 N 1.46721 * 108.24912 * 66.76748 * 18 17 16 20 20 C 1.46900 * 110.99669 * 75.25145 * 19 18 17 21 21 C 1.39934 * 112.10029 * 310.50107 * 19 18 17 22 22 C 1.39217 * 117.91787 * 197.66283 * 21 19 18 23 23 C 1.38046 * 120.39545 * 180.55566 * 22 21 19 24 24 C 1.38260 * 120.02041 * 0.02562 * 23 22 21 25 25 C 1.38048 * 120.02520 * 359.87582 * 24 23 22 26 26 C 1.38949 * 122.49420 * 18.00084 * 21 19 18 27 27 H 1.08997 * 109.46843 * 300.00237 * 1 2 3 28 28 H 1.09006 * 109.46849 * 60.00101 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47299 * 240.00240 * 2 1 3 31 31 H 1.09000 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.09002 * 109.47001 * 29.98759 * 4 3 2 33 33 H 1.08991 * 109.47367 * 149.99394 * 4 3 2 34 34 H 0.96996 * 120.00253 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47204 * 65.41598 * 15 13 3 36 36 H 1.09002 * 109.47164 * 305.41708 * 15 13 3 37 37 H 1.09009 * 109.69875 * 315.73260 * 17 16 15 38 38 H 1.09002 * 109.73595 * 195.15462 * 17 16 15 39 39 H 1.08993 * 109.70692 * 186.45938 * 18 17 16 40 40 H 1.09005 * 109.70340 * 307.08227 * 18 17 16 41 41 H 1.08999 * 109.47166 * 60.00554 * 20 19 18 42 42 H 1.09002 * 109.46879 * 179.97438 * 20 19 18 43 43 H 1.08997 * 109.47570 * 299.99874 * 20 19 18 44 44 H 1.07994 * 119.80614 * 0.58164 * 22 21 19 45 45 H 1.07999 * 119.99072 * 179.97438 * 23 22 21 46 46 H 1.08008 * 119.98679 * 179.87172 * 24 23 22 47 47 H 1.08000 * 119.79819 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1495 2.3905 -2.8774 8 7 5.3916 2.1842 -3.2569 9 14 3.0132 3.4362 -3.9286 10 1 3.1160 4.8563 -3.5066 11 1 3.4068 3.3139 -5.3552 12 1 1.6136 2.9697 -3.7594 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.1852 2.2446 3.5857 17 6 1.0449 3.1598 3.7056 18 6 -0.1251 2.3913 4.3324 19 7 0.2348 2.0533 5.7141 20 6 0.1452 3.2329 6.5849 21 6 1.5005 1.4626 5.7989 22 6 1.8154 0.7598 6.9586 23 6 3.0536 0.1665 7.1013 24 6 3.9903 0.2684 6.0895 25 6 3.6869 0.9614 4.9347 26 6 2.4398 1.5606 4.7797 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7177 2.5747 -4.0827 35 1 2.6895 0.4744 2.5730 36 1 0.9702 0.9273 2.4892 37 1 0.7593 3.5224 2.7180 38 1 1.3145 4.0024 4.3424 39 1 -1.0191 3.0148 4.3275 40 1 -0.3101 1.4780 3.7668 41 1 -0.8751 3.6164 6.5734 42 1 0.4167 2.9542 7.6032 43 1 0.8269 4.0033 6.2247 44 1 1.0865 0.6778 7.7513 45 1 3.2911 -0.3768 8.0040 46 1 4.9597 -0.1942 6.2025 47 1 4.4212 1.0385 4.1465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111303059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:56 Heat of formation + Delta-G solvation = 27.066341 kcal Electronic energy + Delta-G solvation = -27564.806281 eV Core-core repulsion = 23941.352997 eV Total energy + Delta-G solvation = -3623.453284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24953 -39.08535 -37.16047 -36.00759 -35.23173 -32.72629 -30.61861 -30.46508 -30.21590 -29.36383 -27.82939 -26.51305 -24.75153 -23.72957 -23.00494 -22.44342 -21.59682 -19.83752 -18.27254 -17.51619 -16.92076 -16.58019 -16.47770 -16.20971 -15.62351 -15.01919 -14.69016 -14.49525 -14.38941 -14.25864 -13.76906 -13.69336 -13.52317 -13.30942 -12.94472 -12.67134 -12.61970 -12.42087 -12.29695 -12.17211 -11.94896 -11.67630 -11.57828 -11.44851 -11.27373 -11.12543 -10.97548 -10.73022 -10.50830 -10.16657 -10.10753 -9.54380 -9.35778 -8.86323 -8.58709 -8.08775 -7.92787 -7.72380 -6.08324 -4.06964 1.24620 1.32688 3.27877 3.31222 3.31817 3.35197 3.37092 3.56365 3.76427 4.00719 4.39448 4.57361 4.75570 4.79352 4.88072 5.00822 5.03892 5.12497 5.17194 5.19216 5.25502 5.27645 5.32471 5.40798 5.41582 5.45774 5.52828 5.55601 5.61272 5.66390 5.84345 5.93212 5.95887 6.11451 6.15467 6.19579 6.34924 6.47628 6.52019 6.60399 6.70778 6.89729 6.95701 7.02224 7.33859 7.38733 7.61355 8.23836 8.47382 8.93713 8.99845 9.51947 11.05168 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.003530 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.698108 B = 7929.617834 C = 8313.940919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.219 3.781 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.520 6.520 15 C 0.041 3.959 16 N -0.469 5.469 17 C 0.023 3.977 18 C 0.014 3.986 19 N -0.494 5.494 20 C 0.027 3.973 21 C 0.061 3.939 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.119 4.119 25 C -0.105 4.105 26 C 0.075 3.925 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.178 -4.798 19.441 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.098 3.902 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.395 6.395 15 C -0.087 4.087 16 N -0.184 5.184 17 C -0.106 4.106 18 C -0.115 4.115 19 N -0.210 5.210 20 C -0.119 4.119 21 C -0.038 4.038 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.125 4.125 26 C -0.024 4.024 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.824 -4.119 19.264 22.975 hybrid contribution -0.514 0.591 -0.855 1.159 sum -12.338 -3.528 18.409 22.440 Atomic orbital electron populations 1.22235 0.96795 1.01644 1.02091 1.21445 0.93358 0.83954 1.03132 1.47944 1.64476 1.13367 1.06908 1.19623 0.97309 0.93288 0.79980 1.21335 0.95346 1.32880 1.07100 0.90763 1.24854 0.94975 0.95800 0.97362 1.69894 1.15119 1.45008 1.23563 0.86857 0.81441 0.81632 0.79783 1.19936 1.21081 1.19115 1.20099 0.78858 0.87177 0.84568 1.90683 1.44213 1.17807 1.86776 1.22256 1.02049 0.94731 0.89701 1.58540 1.40112 1.17905 1.01819 1.22859 0.88702 0.95466 1.03528 1.22932 0.99127 1.01298 0.88136 1.59232 1.24225 1.27998 1.09559 1.22516 1.01922 0.90539 0.96935 1.18874 0.87544 1.00618 0.96777 1.20799 0.97032 0.97971 0.96860 1.20944 0.93666 1.00693 0.99160 1.20993 0.99630 0.99670 0.93479 1.21021 0.94938 0.98036 0.98523 1.18946 0.93500 0.97351 0.92613 0.93244 0.92112 0.91893 0.89547 0.91623 0.95298 0.94690 0.92575 0.87910 0.91415 0.88504 0.89780 0.89045 0.89884 0.90781 0.90868 0.94487 0.85910 0.86023 0.85824 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.19 37.16 0.38 -1.69 16 2 C 0.11 1.60 5.86 -4.04 -0.02 1.58 16 3 N -0.59 -11.94 2.46 -175.06 -0.43 -12.37 16 4 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 5 C -0.53 -15.16 9.94 -34.44 -0.34 -15.50 16 6 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 9 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.51 10.21 7.17 -10.99 -0.08 10.13 16 14 O -0.52 -12.74 15.18 5.55 0.08 -12.65 16 15 C 0.04 0.63 3.75 -4.98 -0.02 0.61 16 16 N -0.47 -7.25 4.12 -172.20 -0.71 -7.96 16 17 C 0.02 0.32 5.54 -3.73 -0.02 0.30 16 18 C 0.01 0.15 5.86 -3.73 -0.02 0.13 16 19 N -0.49 -5.47 4.85 -178.67 -0.87 -6.33 16 20 C 0.03 0.24 9.28 60.06 0.56 0.80 16 21 C 0.06 0.75 5.16 -83.53 -0.43 0.32 16 22 C -0.11 -1.14 9.24 -39.29 -0.36 -1.50 16 23 C -0.13 -1.24 10.04 -39.64 -0.40 -1.64 16 24 C -0.12 -1.29 10.04 -39.64 -0.40 -1.69 16 25 C -0.10 -1.39 9.10 -39.29 -0.36 -1.75 16 26 C 0.08 1.05 5.13 -83.53 -0.43 0.62 16 27 H 0.05 0.57 7.13 -51.93 -0.37 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.07 0.86 6.59 -51.93 -0.34 0.51 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.10 1.50 6.88 -51.93 -0.36 1.15 16 36 H 0.07 0.89 5.12 -51.93 -0.27 0.62 16 37 H 0.10 1.45 6.93 -51.92 -0.36 1.09 16 38 H 0.08 1.14 6.61 -51.93 -0.34 0.80 16 39 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 40 H 0.08 0.93 6.51 -51.93 -0.34 0.59 16 41 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 42 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 43 H 0.04 0.36 6.66 -51.93 -0.35 0.02 16 44 H 0.12 1.11 8.03 -52.49 -0.42 0.69 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 47 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -34.44 367.79 -9.56 -44.00 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.22 Total: 1.85 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.07 Total: -2.00 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.23 Total: -53.66 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.44 -9.56 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111303059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.071 kcal (2) G-P(sol) polarization free energy of solvation -34.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds