Wall clock time and date at job start Fri Apr 10 2020 23:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47485 * 2 1 4 4 C 1.46500 * 120.00299 * 270.00398 * 3 2 1 5 5 C 1.50702 * 109.46992 * 270.00031 * 4 3 2 6 6 H 1.08006 * 119.99942 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00205 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99932 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46928 * 90.00016 * 9 7 5 11 11 H 1.48492 * 109.47084 * 210.00251 * 9 7 5 12 12 H 1.48498 * 109.47329 * 330.00756 * 9 7 5 13 13 C 1.34773 * 119.99928 * 89.99417 * 3 2 1 14 14 O 1.21284 * 119.99890 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99976 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46959 * 185.41520 * 15 13 3 17 17 C 1.46709 * 111.00049 * 75.96142 * 16 15 13 18 18 C 1.53377 * 108.28301 * 75.42970 * 17 16 15 19 19 N 1.46721 * 108.24912 * 66.76748 * 18 17 16 20 20 C 1.46900 * 110.99669 * 75.25145 * 19 18 17 21 21 C 1.39934 * 112.10029 * 310.50107 * 19 18 17 22 22 C 1.39217 * 117.91787 * 197.66283 * 21 19 18 23 23 C 1.38046 * 120.39545 * 180.55566 * 22 21 19 24 24 C 1.38260 * 120.02041 * 0.02562 * 23 22 21 25 25 C 1.38048 * 120.02520 * 359.87582 * 24 23 22 26 26 C 1.38949 * 122.49420 * 18.00084 * 21 19 18 27 27 H 1.08997 * 109.46843 * 300.00237 * 1 2 3 28 28 H 1.09006 * 109.46849 * 60.00101 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47299 * 240.00240 * 2 1 3 31 31 H 1.09000 * 109.47153 * 120.00227 * 2 1 3 32 32 H 1.09002 * 109.47001 * 29.98759 * 4 3 2 33 33 H 1.08991 * 109.47367 * 149.99394 * 4 3 2 34 34 H 0.96996 * 120.00253 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47204 * 65.41598 * 15 13 3 36 36 H 1.09002 * 109.47164 * 305.41708 * 15 13 3 37 37 H 1.09009 * 109.69875 * 315.73260 * 17 16 15 38 38 H 1.09002 * 109.73595 * 195.15462 * 17 16 15 39 39 H 1.08993 * 109.70692 * 186.45938 * 18 17 16 40 40 H 1.09005 * 109.70340 * 307.08227 * 18 17 16 41 41 H 1.08999 * 109.47166 * 60.00554 * 20 19 18 42 42 H 1.09002 * 109.46879 * 179.97438 * 20 19 18 43 43 H 1.08997 * 109.47570 * 299.99874 * 20 19 18 44 44 H 1.07994 * 119.80614 * 0.58164 * 22 21 19 45 45 H 1.07999 * 119.99072 * 179.97438 * 23 22 21 46 46 H 1.08008 * 119.98679 * 179.87172 * 24 23 22 47 47 H 1.08000 * 119.79819 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1495 2.3905 -2.8774 8 7 5.3916 2.1842 -3.2569 9 14 3.0132 3.4362 -3.9286 10 1 3.1160 4.8563 -3.5066 11 1 3.4068 3.3139 -5.3552 12 1 1.6136 2.9697 -3.7594 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9921 1.3060 2.4723 16 7 2.1852 2.2446 3.5857 17 6 1.0449 3.1598 3.7056 18 6 -0.1251 2.3913 4.3324 19 7 0.2348 2.0533 5.7141 20 6 0.1452 3.2329 6.5849 21 6 1.5005 1.4626 5.7989 22 6 1.8154 0.7598 6.9586 23 6 3.0536 0.1665 7.1013 24 6 3.9903 0.2684 6.0895 25 6 3.6869 0.9614 4.9347 26 6 2.4398 1.5606 4.7797 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1383 34 1 5.7177 2.5747 -4.0827 35 1 2.6895 0.4744 2.5730 36 1 0.9702 0.9273 2.4892 37 1 0.7593 3.5224 2.7180 38 1 1.3145 4.0024 4.3424 39 1 -1.0191 3.0148 4.3275 40 1 -0.3101 1.4780 3.7668 41 1 -0.8751 3.6164 6.5734 42 1 0.4167 2.9542 7.6032 43 1 0.8269 4.0033 6.2247 44 1 1.0865 0.6778 7.7513 45 1 3.2911 -0.3768 8.0040 46 1 4.9597 -0.1942 6.2025 47 1 4.4212 1.0385 4.1465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111303059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:37:55 Heat of formation + Delta-G solvation = 3.446717 kcal Electronic energy + Delta-G solvation = -27565.830505 eV Core-core repulsion = 23941.352997 eV Total energy + Delta-G solvation = -3624.477508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.24627 -40.58647 -38.06123 -37.19891 -36.68080 -34.86676 -32.02680 -31.50624 -31.18271 -30.57675 -29.23174 -27.73694 -25.74948 -24.67707 -24.45774 -23.96912 -22.66553 -20.86102 -19.74069 -19.12215 -18.59505 -17.71212 -17.48123 -17.45517 -17.00546 -16.47228 -15.93241 -15.63383 -15.52514 -15.36533 -15.07986 -14.78142 -14.72044 -14.54881 -14.35359 -14.08898 -13.82862 -13.55036 -13.47522 -13.26327 -13.15190 -13.04524 -12.90313 -12.58345 -12.45587 -12.41888 -12.14306 -12.05436 -12.04100 -11.92490 -11.75452 -11.09261 -10.84590 -10.64596 -10.08618 -9.44326 -8.96683 -8.90968 -8.35235 -6.40370 0.36025 0.43447 1.30658 1.35157 1.43381 1.73969 2.07435 2.29512 2.61753 2.80265 2.89898 2.99130 3.54515 3.64387 3.83792 3.95929 3.99538 4.06277 4.10655 4.22149 4.25652 4.37661 4.42938 4.46542 4.52467 4.53650 4.58451 4.60227 4.65435 4.77087 4.84978 4.88584 4.94967 4.96327 4.98173 5.05237 5.25648 5.34849 5.35121 5.45237 5.56954 5.63142 5.65892 5.76858 5.98999 6.10565 6.23131 6.43554 6.60972 6.67790 7.20153 7.41016 8.81968 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018944 B = 0.003530 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.698108 B = 7929.617834 C = 8313.940919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.229 3.771 5 C -0.537 4.537 6 H 0.026 0.974 7 C 0.011 3.989 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.060 3.940 16 N -0.496 5.496 17 C 0.027 3.973 18 C 0.023 3.977 19 N -0.492 5.492 20 C 0.026 3.974 21 C 0.054 3.946 22 C -0.106 4.106 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.127 4.127 26 C 0.054 3.946 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.017 0.983 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.145 0.855 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.226 -5.947 21.331 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.106 3.894 5 C -0.575 4.575 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.160 1.160 13 C 0.289 3.711 14 O -0.453 6.453 15 C -0.068 4.068 16 N -0.212 5.212 17 C -0.102 4.102 18 C -0.106 4.106 19 N -0.208 5.208 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.147 4.147 26 C -0.045 4.045 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.162 0.838 45 H 0.172 0.828 46 H 0.160 0.840 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.906 -5.324 21.184 26.444 hybrid contribution 0.559 0.884 -1.324 1.687 sum -14.347 -4.439 19.861 24.900 Atomic orbital electron populations 1.22151 0.93721 1.03735 1.02106 1.21773 0.95807 0.81175 1.03786 1.48051 1.64324 1.15142 1.05668 1.19267 0.94732 0.92931 0.82435 1.21576 0.97142 1.32102 1.06695 0.95530 1.25862 0.96728 0.97174 0.98963 1.70051 1.17454 1.46593 1.24499 0.85709 0.80511 0.78914 0.77778 1.20317 1.19914 1.15963 1.20982 0.77407 0.86723 0.86011 1.90643 1.46644 1.20357 1.87701 1.22069 1.03585 0.94014 0.87153 1.58448 1.41504 1.18627 1.02585 1.22782 0.89484 0.95476 1.02453 1.22894 0.98536 1.01129 0.88045 1.59351 1.23348 1.28602 1.09547 1.22607 1.02875 0.89516 0.96965 1.19063 0.87771 1.00881 0.96794 1.21103 0.97776 0.97079 0.96614 1.21319 0.92847 0.99680 0.99641 1.21241 1.00828 0.98898 0.92769 1.21038 0.94700 0.99715 0.99292 1.19019 0.94313 0.98593 0.92578 0.92253 0.93081 0.88689 0.90662 0.89337 0.93219 0.96489 0.92272 0.87470 0.88612 0.90566 0.90484 0.86797 0.89879 0.88771 0.89752 0.95839 0.83761 0.82792 0.83964 0.87423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.19 71.98 0.73 -2.72 16 2 C 0.10 2.85 5.86 86.38 0.51 3.36 16 3 N -0.60 -24.49 2.46 -826.16 -2.03 -26.52 16 4 C 0.23 11.25 4.23 85.63 0.36 11.61 16 5 C -0.54 -32.14 9.94 25.60 0.25 -31.89 16 6 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 7 C 0.01 0.64 5.47 84.66 0.46 1.10 16 8 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 9 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 13 C 0.50 20.82 7.17 87.66 0.63 21.45 16 14 O -0.57 -29.71 15.18 -3.04 -0.05 -29.76 16 15 C 0.06 1.85 3.75 85.56 0.32 2.17 16 16 N -0.50 -15.66 4.12 -698.71 -2.88 -18.54 16 17 C 0.03 0.73 5.54 86.47 0.48 1.21 16 18 C 0.02 0.46 5.86 86.46 0.51 0.97 16 19 N -0.49 -9.72 4.85 -719.20 -3.49 -13.21 16 20 C 0.03 0.40 9.28 127.69 1.18 1.58 16 21 C 0.05 1.23 5.16 38.25 0.20 1.43 16 22 C -0.11 -1.93 9.24 22.46 0.21 -1.73 16 23 C -0.12 -1.93 10.04 22.23 0.22 -1.70 16 24 C -0.12 -2.39 10.04 22.23 0.22 -2.17 16 25 C -0.13 -3.40 9.10 22.46 0.20 -3.19 16 26 C 0.05 1.48 5.13 38.25 0.20 1.68 16 27 H 0.06 1.18 7.13 -2.39 -0.02 1.16 16 28 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 31 H 0.09 2.19 6.59 -2.39 -0.02 2.17 16 32 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 33 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 34 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.11 3.17 6.88 -2.39 -0.02 3.16 16 36 H 0.10 2.36 5.12 -2.39 -0.01 2.35 16 37 H 0.08 2.37 6.93 -2.38 -0.02 2.35 16 38 H 0.08 2.16 6.61 -2.39 -0.02 2.14 16 39 H 0.11 1.75 7.97 -2.39 -0.02 1.73 16 40 H 0.08 1.66 6.51 -2.38 -0.02 1.65 16 41 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 42 H 0.08 1.12 7.62 -2.39 -0.02 1.11 16 43 H 0.02 0.43 6.66 -2.39 -0.02 0.42 16 44 H 0.14 2.01 8.03 -2.91 -0.02 1.99 16 45 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -80.03 367.79 1.34 -78.69 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.90 Total: 19.73 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.69 Total: 3.16 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -8.10 Total: -118.70 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.05 Total: -29.76 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -80.03 1.34 -78.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111303059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.140 kcal (2) G-P(sol) polarization free energy of solvation -80.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds