Wall clock time and date at job start Fri Apr 10 2020 23:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52987 * 1 3 3 H 1.08997 * 109.47632 * 2 1 4 4 C 1.50695 * 109.47547 * 239.99792 * 2 1 3 5 5 H 1.07998 * 120.00427 * 240.00396 * 4 2 1 6 6 C 1.37885 * 119.99778 * 60.00283 * 4 2 1 7 7 N 1.31513 * 119.99793 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00108 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47166 * 89.99767 * 8 6 4 10 10 H 1.48493 * 109.46993 * 209.99751 * 8 6 4 11 11 H 1.48497 * 109.47006 * 329.99809 * 8 6 4 12 12 N 1.46504 * 109.46991 * 120.00054 * 2 1 3 13 13 C 1.46501 * 120.00060 * 60.00470 * 12 2 1 14 14 C 1.34780 * 120.00004 * 239.99877 * 12 2 1 15 15 O 1.21595 * 119.99930 * 0.02562 * 14 12 2 16 16 N 1.34781 * 119.99952 * 180.02562 * 14 12 2 17 17 C 1.40203 * 119.99797 * 184.41572 * 16 14 12 18 18 C 1.38650 * 120.09446 * 325.24398 * 17 16 14 19 19 C 1.38244 * 120.00366 * 179.97438 * 18 17 16 20 20 C 1.38270 * 120.19692 * 0.02562 * 19 18 17 21 21 C 1.38230 * 120.19305 * 0.02562 * 20 19 18 22 22 C 1.38711 * 119.98932 * 359.97299 * 21 20 19 23 23 N 1.39929 * 120.09772 * 180.02562 * 22 21 20 24 24 C 1.48533 * 110.99838 * 7.31664 * 23 22 21 25 25 C 1.54931 * 103.22594 * 159.71949 * 24 23 22 26 26 C 1.54596 * 102.92468 * 322.58274 * 25 24 23 27 27 C 1.47899 * 110.99915 * 124.71174 * 23 22 21 28 28 H 1.09003 * 109.47587 * 299.99750 * 1 2 3 29 29 H 1.08999 * 109.47311 * 60.00074 * 1 2 3 30 30 H 1.08997 * 109.47632 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99936 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46851 * 269.99808 * 13 12 2 33 33 H 1.09002 * 109.47080 * 29.99356 * 13 12 2 34 34 H 1.08993 * 109.47196 * 150.00132 * 13 12 2 35 35 H 0.96998 * 119.99548 * 4.41024 * 16 14 12 36 36 H 1.08001 * 120.00069 * 359.97438 * 18 17 16 37 37 H 1.08004 * 119.90483 * 179.74609 * 19 18 17 38 38 H 1.08007 * 119.90967 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.00733 * 180.02562 * 21 20 19 40 40 H 1.09000 * 110.66597 * 278.15958 * 24 23 22 41 41 H 1.09004 * 110.66696 * 41.28708 * 24 23 22 42 42 H 1.09007 * 110.72638 * 204.22506 * 25 24 23 43 43 H 1.09003 * 110.72381 * 80.94639 * 25 24 23 44 44 H 1.08990 * 110.30957 * 263.04175 * 26 25 24 45 45 H 1.09001 * 110.30649 * 140.86910 * 26 25 24 46 46 H 1.09006 * 109.91851 * 333.50786 * 27 23 22 47 47 H 1.09001 * 109.91682 * 94.80609 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1122 11 1 3.6293 -1.7582 -3.7121 12 7 2.0182 -0.6906 1.1962 13 6 1.6643 -2.0933 1.4280 14 6 2.7931 -0.0357 2.0834 15 8 3.0865 1.1286 1.8912 16 7 3.2427 -0.6712 3.1836 17 6 3.9708 0.0341 4.1522 18 6 4.8291 1.0540 3.7708 19 6 5.5456 1.7486 4.7274 20 6 5.4099 1.4293 6.0659 21 6 4.5573 0.4133 6.4552 22 6 3.8345 -0.2888 5.5019 23 7 2.9704 -1.3173 5.8935 24 6 2.8457 -1.3736 7.3725 25 6 1.5218 -2.1491 7.5874 26 6 0.6253 -1.6272 6.4412 27 6 1.6024 -1.0838 5.3822 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7082 1.1609 -3.4844 32 1 0.7374 -2.1445 1.9993 33 1 1.5294 -2.5969 0.4708 34 1 2.4627 -2.5819 1.9863 35 1 3.0625 -1.6165 3.3053 36 1 4.9379 1.3059 2.7262 37 1 6.2169 2.5400 4.4282 38 1 5.9716 1.9753 6.8095 39 1 4.4533 0.1667 7.5015 40 1 3.6845 -1.9158 7.8090 41 1 2.7757 -0.3696 7.7912 42 1 1.0868 -1.9084 8.5575 43 1 1.6839 -3.2228 7.4921 44 1 -0.0238 -0.8294 6.8019 45 1 0.0309 -2.4408 6.0254 46 1 1.4372 -0.0160 5.2378 47 1 1.4623 -1.6146 4.4405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119938447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:20 Heat of formation + Delta-G solvation = 7.650244 kcal Electronic energy + Delta-G solvation = -27612.279384 eV Core-core repulsion = 23987.984154 eV Total energy + Delta-G solvation = -3624.295229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.07042 -40.65146 -38.66831 -37.25890 -35.89141 -34.68198 -33.52071 -31.66316 -30.43900 -29.80092 -28.97345 -27.65757 -27.30348 -24.54067 -23.98760 -22.67951 -21.89211 -21.40405 -20.64727 -19.29754 -18.62798 -18.22076 -17.70027 -17.01828 -16.89283 -16.62244 -16.15637 -15.88483 -15.46983 -15.12801 -14.91096 -14.64099 -14.52665 -14.31123 -14.02266 -13.84539 -13.55641 -13.29609 -13.18056 -13.02739 -12.93462 -12.72660 -12.64797 -12.54120 -12.45726 -12.25353 -12.18427 -12.11710 -11.99879 -11.43511 -11.31960 -11.22231 -10.88982 -10.60372 -10.52220 -9.54553 -9.24477 -8.62789 -8.14574 -6.31347 0.37415 0.44704 1.40881 1.42733 1.52339 1.74068 2.15223 2.41834 2.69648 3.05354 3.05859 3.13201 3.62160 3.71213 3.97446 4.05354 4.19921 4.25420 4.30506 4.38071 4.45797 4.52740 4.62007 4.63271 4.67419 4.74192 4.84068 4.88301 4.90443 4.94302 4.94791 5.00296 5.04847 5.12361 5.16649 5.28778 5.35351 5.44062 5.51591 5.58306 5.63197 5.70095 5.81751 5.89571 5.97310 6.14456 6.23314 6.33407 6.75826 7.05261 7.35789 7.61694 8.89496 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.003701 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.534848 B = 7563.354262 C = 8559.451581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.279 3.721 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.610 5.610 13 C 0.082 3.918 14 C 0.691 3.309 15 O -0.627 6.627 16 N -0.671 5.671 17 C 0.130 3.870 18 C -0.130 4.130 19 C -0.132 4.132 20 C -0.110 4.110 21 C -0.147 4.147 22 C 0.065 3.935 23 N -0.474 5.474 24 C 0.028 3.972 25 C -0.115 4.115 26 C -0.129 4.129 27 C 0.039 3.961 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -7.611 23.185 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.177 3.823 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.344 5.344 13 C -0.060 4.060 14 C 0.393 3.607 15 O -0.508 6.508 16 N -0.322 5.322 17 C 0.033 3.967 18 C -0.151 4.151 19 C -0.151 4.151 20 C -0.129 4.129 21 C -0.167 4.167 22 C -0.035 4.035 23 N -0.191 5.191 24 C -0.097 4.097 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.087 4.087 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.255 0.745 36 H 0.124 0.876 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.042 0.958 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.779 -7.263 22.620 23.919 hybrid contribution -0.096 0.338 -1.384 1.428 sum 2.683 -6.925 21.236 22.497 Atomic orbital electron populations 1.21863 0.96982 1.00143 0.99838 1.18459 0.91461 0.91913 0.80436 0.97267 1.21571 1.31973 1.13122 0.91120 0.92200 1.25714 0.95051 0.95607 1.01923 1.70023 1.37240 1.23805 1.24452 0.85446 0.78781 0.78271 0.78437 1.19098 1.21140 1.19777 1.47447 1.51045 1.13144 1.22792 1.21767 1.00445 0.80807 1.03017 1.16180 0.79503 0.84521 0.80497 1.90823 1.64302 1.17884 1.77823 1.42690 1.56776 1.13058 1.19667 1.17465 0.95219 0.97095 0.86921 1.21239 0.95896 0.97370 1.00577 1.21216 1.00171 1.00431 0.93302 1.21319 0.98610 0.97323 0.95636 1.21393 0.99375 0.96452 0.99500 1.18955 0.99700 0.93943 0.90879 1.61930 1.07351 1.38233 1.11542 1.23577 1.00151 1.00816 0.85201 1.22506 0.93401 1.00701 0.98696 1.22440 0.97391 1.01431 0.95408 1.22925 0.87272 0.98728 0.99760 0.96410 0.91218 0.93335 0.92600 0.91478 0.90362 0.90795 0.74505 0.87581 0.84611 0.82557 0.82217 0.87964 0.91770 0.88641 0.89921 0.90880 0.89699 0.95789 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 8.97 71.98 0.65 -5.71 16 2 C 0.28 14.93 2.64 44.24 0.12 15.04 16 3 H 0.01 0.60 6.90 -2.39 -0.02 0.58 16 4 C -0.54 -29.77 7.99 25.60 0.20 -29.56 16 5 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.61 -27.01 2.75 -844.84 -2.33 -29.33 16 13 C 0.08 2.69 9.24 127.77 1.18 3.87 16 14 C 0.69 31.22 8.13 179.05 1.46 32.68 16 15 O -0.63 -34.03 13.10 -4.01 -0.05 -34.08 16 16 N -0.67 -23.74 3.73 -316.68 -1.18 -24.92 16 17 C 0.13 4.43 6.02 38.19 0.23 4.66 16 18 C -0.13 -4.70 8.70 22.37 0.19 -4.50 16 19 C -0.13 -3.66 10.04 22.28 0.22 -3.44 16 20 C -0.11 -2.36 10.04 22.28 0.22 -2.13 16 21 C -0.15 -3.13 8.81 22.38 0.20 -2.94 16 22 C 0.07 1.74 5.45 38.25 0.21 1.95 16 23 N -0.47 -10.43 5.10 -682.18 -3.48 -13.91 16 24 C 0.03 0.41 5.19 86.65 0.45 0.86 16 25 C -0.12 -1.35 7.06 31.80 0.22 -1.12 16 26 C -0.13 -2.02 6.93 31.47 0.22 -1.80 16 27 C 0.04 0.90 5.24 86.45 0.45 1.36 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 30 H 0.05 2.14 7.67 -2.39 -0.02 2.12 16 31 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.08 2.70 7.02 -2.39 -0.02 2.69 16 34 H 0.07 1.97 6.30 -2.39 -0.02 1.96 16 35 H 0.41 12.42 5.02 -92.71 -0.47 11.95 16 36 H 0.11 4.65 6.20 -2.91 -0.02 4.63 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.16 2.31 5.92 -2.91 -0.02 2.30 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 0.89 6.56 -2.38 -0.02 0.87 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.02 0.69 7.69 -2.38 -0.02 0.67 16 47 H 0.07 1.77 6.63 -2.39 -0.02 1.76 16 Total: -1.00 -72.38 363.31 2.42 -69.96 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.51 Total: 29.19 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 6.67 Total: 10.59 kcal Atomic # 7 Polarization: -114.47 SS G_CDS: -6.74 Total: -121.21 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.38 2.42 -69.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119938447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.612 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds