Wall clock time and date at job start Fri Apr 10 2020 23:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46976 * 2 1 4 4 C 1.46498 * 120.00004 * 270.00141 * 3 2 1 5 5 C 1.39045 * 119.99529 * 90.00634 * 3 2 1 6 6 C 1.39221 * 119.93071 * 179.97438 * 5 3 2 7 7 C 1.37605 * 120.07415 * 179.97438 * 6 5 3 8 8 C 1.39803 * 119.92873 * 0.02562 * 7 6 5 9 9 C 1.47521 * 120.06744 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00078 * 36.23996 * 9 8 7 11 11 N 1.34776 * 119.99472 * 216.24305 * 9 8 7 12 12 C 1.46966 * 120.59672 * 5.48368 * 11 9 8 13 13 C 1.53810 * 108.39960 * 124.76289 * 12 11 9 14 14 N 1.46965 * 108.58071 * 49.63288 * 13 12 11 15 15 C 1.36934 * 120.59421 * 124.62705 * 14 13 12 16 16 H 1.07998 * 120.00160 * 205.00260 * 15 14 13 17 17 C 1.38817 * 120.00049 * 25.00273 * 15 14 13 18 18 N 1.31624 * 119.99748 * 16.53896 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 196.54534 * 17 15 14 20 20 H 1.48493 * 109.47166 * 59.99615 * 19 17 15 21 21 H 1.48504 * 109.46717 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46852 * 299.99579 * 19 17 15 23 23 C 1.46968 * 118.81230 * 304.64950 * 14 13 12 24 24 C 1.46965 * 120.58910 * 185.76338 * 11 9 8 25 25 C 1.39797 * 119.85852 * 359.97342 * 8 7 6 26 26 C 1.37600 * 119.93284 * 0.02562 * 25 8 7 27 27 H 1.09004 * 109.46870 * 299.99549 * 1 2 3 28 28 H 1.09003 * 109.47079 * 59.99249 * 1 2 3 29 29 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46870 * 240.00451 * 2 1 3 31 31 H 1.08996 * 109.47116 * 120.00362 * 2 1 3 32 32 H 1.09000 * 109.46968 * 270.00112 * 4 3 2 33 33 H 1.08997 * 109.47372 * 29.99990 * 4 3 2 34 34 H 1.08997 * 109.46887 * 150.00785 * 4 3 2 35 35 H 1.08003 * 119.96387 * 359.97438 * 6 5 3 36 36 H 1.07995 * 120.03828 * 179.72492 * 7 6 5 37 37 H 1.09005 * 109.60284 * 244.54225 * 12 11 9 38 38 H 1.08994 * 109.61054 * 5.04917 * 12 11 9 39 39 H 1.09002 * 109.73518 * 289.84779 * 13 12 11 40 40 H 1.08998 * 109.67747 * 169.38374 * 13 12 11 41 41 H 0.96998 * 119.99790 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.61008 * 295.48037 * 23 14 13 43 43 H 1.09002 * 109.74857 * 175.05089 * 23 14 13 44 44 H 1.08998 * 109.61130 * 354.95033 * 24 11 9 45 45 H 1.09005 * 109.61066 * 115.28578 * 24 11 9 46 46 H 1.07997 * 120.03058 * 180.02562 * 25 8 7 47 47 H 1.08002 * 119.96601 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2502 2.0366 1.2042 6 6 2.7147 3.3490 1.2027 7 6 2.9446 4.0005 2.3927 8 6 2.7117 3.3430 3.6042 9 6 2.9577 4.0384 4.8818 10 8 2.7177 5.2260 4.9836 11 7 3.4485 3.3571 5.9361 12 6 3.8557 1.9521 5.7949 13 6 5.3153 1.8204 6.2620 14 7 5.4471 2.4676 7.5748 15 6 5.9448 1.7753 8.6463 16 1 5.6816 2.0724 9.6507 17 6 6.7878 0.6915 8.4415 18 7 7.3687 0.5213 7.2727 19 14 7.0975 -0.5253 9.8246 20 1 5.8120 -1.1435 10.2371 21 1 8.0268 -1.5836 9.3538 22 1 7.6997 0.1839 10.9821 23 6 5.0346 3.8710 7.7173 24 6 3.5803 4.0043 7.2490 25 6 2.2452 2.0251 3.6024 26 6 2.0172 1.3791 2.4091 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2919 1.9006 -1.5834 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 2.8948 3.8563 0.2664 36 1 3.3092 5.0171 2.3908 37 1 3.2137 1.3217 6.4102 38 1 3.7756 1.6512 4.7504 39 1 5.9764 2.3082 5.5456 40 1 5.5802 0.7664 6.3455 41 1 7.9574 -0.2362 7.1295 42 1 5.6758 4.5047 7.1046 43 1 5.1118 4.1734 8.7617 44 1 3.3182 5.0590 7.1649 45 1 2.9169 3.5186 7.9646 46 1 2.0640 1.5147 4.5367 47 1 1.6565 0.3611 2.4071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152773351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:03 Heat of formation + Delta-G solvation = 44.736172 kcal Electronic energy + Delta-G solvation = -26951.262643 eV Core-core repulsion = 23328.575580 eV Total energy + Delta-G solvation = -3622.687063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.25230 -39.01666 -36.80029 -36.29953 -33.85679 -32.23691 -31.34683 -30.79333 -30.22758 -29.39468 -27.08845 -26.27746 -24.22978 -23.48209 -22.82423 -21.99664 -21.30645 -20.14799 -18.94029 -17.60460 -17.07669 -16.25291 -16.04416 -15.52242 -14.97002 -14.78752 -14.76788 -14.62925 -14.00660 -13.85452 -13.78607 -13.58438 -13.25282 -13.21009 -13.09915 -12.81403 -12.59375 -12.40405 -12.25168 -12.18462 -11.92533 -11.49882 -11.37587 -11.23035 -10.81693 -10.79384 -10.66731 -10.44980 -10.15875 -10.03140 -9.85406 -9.79659 -9.27838 -8.83704 -8.56079 -8.16335 -7.37199 -6.69974 -5.81008 -3.24358 1.29296 1.50393 2.88137 3.20253 3.36665 3.42303 3.43179 3.57083 4.05031 4.46853 4.57169 4.68687 4.85670 4.95431 4.97595 5.01765 5.11032 5.23027 5.32554 5.32802 5.36623 5.44217 5.46858 5.48576 5.58484 5.68208 5.87972 5.88297 5.93737 5.99312 6.07660 6.18097 6.20628 6.21717 6.38906 6.44744 6.50638 6.60923 6.76271 6.84895 7.02745 7.06869 7.30928 7.35029 7.59014 7.72431 8.03459 8.38243 8.69427 9.15473 9.78510 10.33981 11.25434 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003362 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.437130 B = 8325.522141 C = 9492.048292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.116 3.884 3 N -0.629 5.629 4 C 0.091 3.909 5 C 0.233 3.767 6 C -0.209 4.209 7 C -0.016 4.016 8 C -0.182 4.182 9 C 0.558 3.442 10 O -0.563 6.563 11 N -0.592 5.592 12 C 0.069 3.931 13 C 0.153 3.847 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.905 5.905 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.132 3.868 24 C 0.096 3.904 25 C -0.037 4.037 26 C -0.207 4.207 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.021 0.979 40 H 0.110 0.890 41 H 0.255 0.745 42 H 0.024 0.976 43 H 0.065 0.935 44 H 0.082 0.918 45 H 0.062 0.938 46 H 0.133 0.867 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 -1.046 -16.361 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.340 5.340 4 C -0.052 4.052 5 C 0.131 3.869 6 C -0.232 4.232 7 C -0.036 4.036 8 C -0.187 4.187 9 C 0.348 3.652 10 O -0.443 6.443 11 N -0.324 5.324 12 C -0.055 4.055 13 C 0.026 3.974 14 N -0.316 5.316 15 C -0.379 4.379 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.551 5.551 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.005 3.995 24 C -0.028 4.028 25 C -0.056 4.056 26 C -0.229 4.229 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.039 0.961 40 H 0.127 0.873 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.151 0.849 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.476 -0.669 -16.492 20.690 hybrid contribution 0.278 -0.773 0.617 1.028 sum -12.198 -1.443 -15.874 20.072 Atomic orbital electron populations 1.22233 0.96330 1.02027 1.02572 1.21439 0.94046 0.82276 1.02948 1.46383 1.71066 1.13287 1.03221 1.21647 1.00620 0.97926 0.84988 1.17948 0.91965 0.91306 0.85719 1.20552 1.10106 0.94100 0.98404 1.20883 0.93463 0.98839 0.90372 1.19658 1.09950 0.95581 0.93545 1.18278 0.77111 0.86268 0.83583 1.90701 1.54454 1.15174 1.84010 1.47955 1.61335 1.13426 1.09636 1.23191 1.00592 0.80459 1.01276 1.21418 0.88638 1.01547 0.85748 1.44042 1.73531 1.06181 1.07812 1.19227 1.21968 1.09903 0.86821 0.91370 1.25001 0.96777 1.01057 0.97112 1.69972 1.31480 1.30635 1.22970 0.86306 0.77618 0.80968 0.81519 1.21037 1.21611 1.20923 1.21277 0.91576 0.87634 0.99027 1.22183 0.99638 0.97928 0.83031 1.21259 0.93632 0.92664 0.98050 1.20570 1.10663 1.00944 0.90720 0.92055 0.92669 0.91720 0.90846 0.90221 0.93218 0.91685 0.91161 0.85727 0.85425 0.91982 0.89649 0.96070 0.87253 0.93482 0.95848 0.91629 0.90009 0.92006 0.84891 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 37.16 0.38 -0.77 16 2 C 0.12 0.85 5.86 -4.04 -0.02 0.83 16 3 N -0.63 -5.81 2.99 -179.63 -0.54 -6.34 16 4 C 0.09 0.63 10.17 59.85 0.61 1.24 16 5 C 0.23 2.75 6.55 -83.86 -0.55 2.20 16 6 C -0.21 -2.58 9.18 -39.45 -0.36 -2.94 16 7 C -0.02 -0.23 9.60 -39.23 -0.38 -0.61 16 8 C -0.18 -2.98 5.29 -104.95 -0.55 -3.53 16 9 C 0.56 10.79 7.36 -12.48 -0.09 10.70 16 10 O -0.56 -12.27 16.26 5.28 0.09 -12.19 16 11 N -0.59 -11.48 2.94 -173.45 -0.51 -11.99 16 12 C 0.07 1.30 5.00 -3.37 -0.02 1.28 16 13 C 0.15 3.60 5.57 -3.37 -0.02 3.58 16 14 N -0.59 -14.79 2.98 -171.77 -0.51 -15.31 16 15 C -0.25 -6.72 9.62 -15.06 -0.14 -6.86 16 16 H 0.07 1.79 7.87 -52.49 -0.41 1.38 16 17 C 0.00 -0.04 4.97 -17.43 -0.09 -0.13 16 18 N -0.91 -25.61 10.89 55.49 0.60 -25.01 16 19 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 2.86 6.67 -3.60 -0.02 2.83 16 24 C 0.10 1.86 6.60 -3.60 -0.02 1.84 16 25 C -0.04 -0.52 7.32 -39.23 -0.29 -0.81 16 26 C -0.21 -2.52 9.18 -39.45 -0.36 -2.88 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 31 H 0.08 0.60 6.17 -51.93 -0.32 0.28 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 35 H 0.12 1.25 6.11 -52.48 -0.32 0.93 16 36 H 0.13 1.85 8.02 -52.49 -0.42 1.43 16 37 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 38 H 0.09 1.45 4.37 -51.93 -0.23 1.22 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 2.82 5.68 -51.93 -0.29 2.52 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 44 H 0.08 1.55 6.99 -51.93 -0.36 1.19 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.13 1.80 6.13 -52.49 -0.32 1.47 16 47 H 0.13 1.27 6.11 -52.49 -0.32 0.95 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -32.03 367.27 -9.39 -41.41 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.09 Total: 1.73 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -1.93 Total: 5.97 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.96 Total: -58.65 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.03 -9.39 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152773351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.147 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds