Wall clock time and date at job start Fri Apr 10 2020 23:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46976 * 2 1 4 4 C 1.46498 * 120.00004 * 270.00141 * 3 2 1 5 5 C 1.39045 * 119.99529 * 90.00634 * 3 2 1 6 6 C 1.39221 * 119.93071 * 179.97438 * 5 3 2 7 7 C 1.37605 * 120.07415 * 179.97438 * 6 5 3 8 8 C 1.39803 * 119.92873 * 0.02562 * 7 6 5 9 9 C 1.47521 * 120.06744 * 179.97438 * 8 7 6 10 10 O 1.21595 * 120.00078 * 36.23996 * 9 8 7 11 11 N 1.34776 * 119.99472 * 216.24305 * 9 8 7 12 12 C 1.46966 * 120.59672 * 5.48368 * 11 9 8 13 13 C 1.53810 * 108.39960 * 124.76289 * 12 11 9 14 14 N 1.46965 * 108.58071 * 49.63288 * 13 12 11 15 15 C 1.36934 * 120.59421 * 124.62705 * 14 13 12 16 16 H 1.07998 * 120.00160 * 205.00260 * 15 14 13 17 17 C 1.38817 * 120.00049 * 25.00273 * 15 14 13 18 18 N 1.31624 * 119.99748 * 16.53896 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 196.54534 * 17 15 14 20 20 H 1.48493 * 109.47166 * 59.99615 * 19 17 15 21 21 H 1.48504 * 109.46717 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46852 * 299.99579 * 19 17 15 23 23 C 1.46968 * 118.81230 * 304.64950 * 14 13 12 24 24 C 1.46965 * 120.58910 * 185.76338 * 11 9 8 25 25 C 1.39797 * 119.85852 * 359.97342 * 8 7 6 26 26 C 1.37600 * 119.93284 * 0.02562 * 25 8 7 27 27 H 1.09004 * 109.46870 * 299.99549 * 1 2 3 28 28 H 1.09003 * 109.47079 * 59.99249 * 1 2 3 29 29 H 1.08994 * 109.47168 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46870 * 240.00451 * 2 1 3 31 31 H 1.08996 * 109.47116 * 120.00362 * 2 1 3 32 32 H 1.09000 * 109.46968 * 270.00112 * 4 3 2 33 33 H 1.08997 * 109.47372 * 29.99990 * 4 3 2 34 34 H 1.08997 * 109.46887 * 150.00785 * 4 3 2 35 35 H 1.08003 * 119.96387 * 359.97438 * 6 5 3 36 36 H 1.07995 * 120.03828 * 179.72492 * 7 6 5 37 37 H 1.09005 * 109.60284 * 244.54225 * 12 11 9 38 38 H 1.08994 * 109.61054 * 5.04917 * 12 11 9 39 39 H 1.09002 * 109.73518 * 289.84779 * 13 12 11 40 40 H 1.08998 * 109.67747 * 169.38374 * 13 12 11 41 41 H 0.96998 * 119.99790 * 180.02562 * 18 17 15 42 42 H 1.08993 * 109.61008 * 295.48037 * 23 14 13 43 43 H 1.09002 * 109.74857 * 175.05089 * 23 14 13 44 44 H 1.08998 * 109.61130 * 354.95033 * 24 11 9 45 45 H 1.09005 * 109.61066 * 115.28578 * 24 11 9 46 46 H 1.07997 * 120.03058 * 180.02562 * 25 8 7 47 47 H 1.08002 * 119.96601 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 2.2502 2.0366 1.2042 6 6 2.7147 3.3490 1.2027 7 6 2.9446 4.0005 2.3927 8 6 2.7117 3.3430 3.6042 9 6 2.9577 4.0384 4.8818 10 8 2.7177 5.2260 4.9836 11 7 3.4485 3.3571 5.9361 12 6 3.8557 1.9521 5.7949 13 6 5.3153 1.8204 6.2620 14 7 5.4471 2.4676 7.5748 15 6 5.9448 1.7753 8.6463 16 1 5.6816 2.0724 9.6507 17 6 6.7878 0.6915 8.4415 18 7 7.3687 0.5213 7.2727 19 14 7.0975 -0.5253 9.8246 20 1 5.8120 -1.1435 10.2371 21 1 8.0268 -1.5836 9.3538 22 1 7.6997 0.1839 10.9821 23 6 5.0346 3.8710 7.7173 24 6 3.5803 4.0043 7.2490 25 6 2.2452 2.0251 3.6024 26 6 2.0172 1.3791 2.4091 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.2919 1.9006 -1.5834 33 1 1.5817 1.6878 -2.0284 34 1 2.0956 3.1411 -1.1383 35 1 2.8948 3.8563 0.2664 36 1 3.3092 5.0171 2.3908 37 1 3.2137 1.3217 6.4102 38 1 3.7756 1.6512 4.7504 39 1 5.9764 2.3082 5.5456 40 1 5.5802 0.7664 6.3455 41 1 7.9574 -0.2362 7.1295 42 1 5.6758 4.5047 7.1046 43 1 5.1118 4.1734 8.7617 44 1 3.3182 5.0590 7.1649 45 1 2.9169 3.5186 7.9646 46 1 2.0640 1.5147 4.5367 47 1 1.6565 0.3611 2.4071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152773351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:38:57 Heat of formation + Delta-G solvation = 26.790763 kcal Electronic energy + Delta-G solvation = -26952.040815 eV Core-core repulsion = 23328.575580 eV Total energy + Delta-G solvation = -3623.465234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 5.44 seconds Orbital eigenvalues (eV) -41.51517 -40.17311 -38.42739 -37.31696 -35.63214 -33.51440 -32.68761 -31.88005 -31.72894 -30.49778 -28.72660 -27.19007 -25.68914 -24.88575 -24.23248 -23.10968 -22.55075 -21.41363 -20.43974 -19.04602 -18.20567 -17.76044 -17.28881 -16.83133 -16.59411 -16.11964 -15.76335 -15.66707 -15.44866 -15.26866 -15.22942 -14.96050 -14.75706 -14.52635 -14.08819 -13.95972 -13.50668 -13.36865 -13.33953 -13.27133 -13.04513 -12.88445 -12.67325 -12.59773 -12.47319 -12.23959 -12.01003 -11.99316 -11.83456 -11.71079 -11.58919 -10.95062 -10.68461 -10.55514 -9.90435 -9.81900 -8.68833 -8.23670 -7.85036 -5.33110 0.17805 0.48696 1.51097 1.52681 1.59909 1.81506 2.10547 2.17993 2.53145 2.92268 3.27914 3.61028 3.64714 3.81948 3.93697 4.11118 4.23828 4.24937 4.31804 4.36335 4.37188 4.43265 4.50904 4.57143 4.58792 4.62521 4.70267 4.73625 4.78517 4.81577 4.92158 4.94350 4.97468 5.05199 5.11275 5.23783 5.25956 5.33181 5.38727 5.49135 5.60068 5.62711 5.70076 5.77789 6.32917 6.35874 6.47912 6.51601 7.11340 7.18810 7.79584 8.32274 9.18877 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003362 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.437130 B = 8325.522141 C = 9492.048292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.109 3.891 3 N -0.626 5.626 4 C 0.083 3.917 5 C 0.240 3.760 6 C -0.209 4.209 7 C -0.026 4.026 8 C -0.216 4.216 9 C 0.557 3.443 10 O -0.595 6.595 11 N -0.598 5.598 12 C 0.088 3.912 13 C 0.160 3.840 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.072 0.928 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.973 3.027 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.132 3.868 24 C 0.105 3.895 25 C -0.039 4.039 26 C -0.207 4.207 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.107 0.893 39 H -0.010 1.010 40 H 0.088 0.912 41 H 0.252 0.748 42 H 0.006 0.994 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.137 0.863 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 -2.642 -17.777 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.334 5.334 4 C -0.059 4.059 5 C 0.134 3.866 6 C -0.232 4.232 7 C -0.046 4.046 8 C -0.221 4.221 9 C 0.349 3.651 10 O -0.478 6.478 11 N -0.329 5.329 12 C -0.035 4.035 13 C 0.033 3.967 14 N -0.333 5.333 15 C -0.393 4.393 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.801 3.199 20 H -0.201 1.201 21 H -0.220 1.220 22 H -0.205 1.205 23 C 0.006 3.994 24 C -0.019 4.019 25 C -0.058 4.058 26 C -0.229 4.229 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.008 0.992 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.024 0.976 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.155 0.845 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.987 -2.273 -17.940 22.862 hybrid contribution 0.732 -0.275 0.885 1.180 sum -13.256 -2.548 -17.056 21.751 Atomic orbital electron populations 1.22177 0.95665 1.02852 1.01906 1.21659 0.94521 0.81228 1.03956 1.46704 1.69593 1.14001 1.03061 1.21860 1.01631 0.98089 0.84333 1.18109 0.90554 0.91163 0.86790 1.20738 1.09592 0.94472 0.98369 1.20931 0.93979 0.98775 0.90886 1.19528 1.13382 0.96841 0.92366 1.18791 0.76097 0.85947 0.84307 1.90664 1.55920 1.16641 1.84595 1.48017 1.61516 1.13542 1.09794 1.22976 0.97333 0.80589 1.02651 1.21237 0.91038 0.99596 0.84797 1.44308 1.73707 1.07428 1.07818 1.19567 1.21901 1.10280 0.87568 0.90984 1.25763 0.96781 1.02630 0.99369 1.70142 1.32194 1.30996 1.24839 0.85259 0.77502 0.78468 0.78681 1.20093 1.21995 1.20546 1.21344 0.92715 0.85870 0.99481 1.22038 0.97945 0.98414 0.83517 1.21283 0.93616 0.91821 0.99095 1.20789 1.10120 1.01819 0.90176 0.93623 0.92383 0.90217 0.88800 0.90333 0.92599 0.89524 0.90943 0.83457 0.86181 0.90795 0.87490 0.99172 0.89431 0.93892 0.97638 0.90576 0.89690 0.90707 0.84537 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 71.98 0.74 -0.98 16 2 C 0.11 1.22 5.86 86.38 0.51 1.73 16 3 N -0.63 -9.58 2.99 -722.21 -2.16 -11.74 16 4 C 0.08 0.87 10.17 127.77 1.30 2.17 16 5 C 0.24 5.11 6.55 38.47 0.25 5.36 16 6 C -0.21 -4.83 9.18 22.36 0.21 -4.63 16 7 C -0.03 -0.76 9.60 22.50 0.22 -0.54 16 8 C -0.22 -7.06 5.29 -20.07 -0.11 -7.17 16 9 C 0.56 21.89 7.36 86.69 0.64 22.53 16 10 O -0.60 -26.61 16.26 -4.02 -0.07 -26.68 16 11 N -0.60 -23.35 2.94 -820.92 -2.41 -25.77 16 12 C 0.09 3.32 5.00 86.56 0.43 3.76 16 13 C 0.16 7.72 5.57 86.56 0.48 8.20 16 14 N -0.61 -30.94 2.98 -697.35 -2.08 -33.02 16 15 C -0.26 -14.26 9.62 84.04 0.81 -13.45 16 16 H 0.07 3.76 7.87 -2.91 -0.02 3.74 16 17 C -0.05 -2.75 4.97 84.86 0.42 -2.33 16 18 N -0.94 -53.97 10.89 21.65 0.24 -53.73 16 19 Si 0.97 43.72 29.59 68.60 2.03 45.75 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.13 5.84 6.67 86.41 0.58 6.41 16 24 C 0.10 4.07 6.60 86.41 0.57 4.64 16 25 C -0.04 -1.06 7.32 22.50 0.16 -0.89 16 26 C -0.21 -4.62 9.18 22.35 0.21 -4.41 16 27 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.72 8.07 -2.39 -0.02 0.70 16 31 H 0.08 0.93 6.17 -2.39 -0.01 0.91 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 34 H 0.07 0.75 6.17 -2.39 -0.01 0.74 16 35 H 0.15 2.63 6.11 -2.91 -0.02 2.61 16 36 H 0.12 3.59 8.02 -2.91 -0.02 3.56 16 37 H 0.07 2.64 8.11 -2.38 -0.02 2.62 16 38 H 0.11 3.60 4.37 -2.39 -0.01 3.59 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.09 4.64 5.68 -2.39 -0.01 4.62 16 41 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 42 H 0.01 0.26 8.14 -2.39 -0.02 0.25 16 43 H 0.08 3.13 7.93 -2.39 -0.02 3.11 16 44 H 0.08 3.25 6.99 -2.39 -0.02 3.23 16 45 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 46 H 0.14 3.52 6.13 -2.91 -0.02 3.50 16 47 H 0.15 2.58 6.11 -2.91 -0.02 2.57 16 Total: -1.00 -70.05 367.27 3.92 -66.12 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.97 Total: 18.68 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.41 Total: 20.38 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -6.42 Total: -124.26 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.07 Total: -26.68 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.05 3.92 -66.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152773351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.914 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.44 seconds