Wall clock time and date at job start Fri Apr 10 2020 23:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47349 * 2 1 4 4 C 1.53000 * 109.47460 * 119.99822 * 2 1 3 5 5 N 1.46892 * 109.47126 * 296.87066 * 4 2 1 6 6 C 1.46964 * 111.00116 * 183.97739 * 5 4 2 7 7 C 1.53051 * 109.36446 * 183.18668 * 6 5 4 8 8 N 1.46956 * 109.36461 * 301.59628 * 7 6 5 9 9 C 1.39673 * 111.00023 * 183.18854 * 8 7 6 10 10 C 1.38906 * 120.07527 * 179.97438 * 9 8 7 11 11 C 1.38106 * 119.92680 * 180.02562 * 10 9 8 12 12 C 1.38288 * 120.07329 * 359.97438 * 11 10 9 13 13 C 1.38294 * 120.14949 * 359.97438 * 12 11 10 14 14 C 1.38102 * 120.07453 * 0.02562 * 13 12 11 15 15 C 1.46956 * 110.87970 * 59.31950 * 8 7 6 16 16 C 1.46965 * 111.00088 * 307.76985 * 5 4 2 17 17 N 1.46506 * 109.47416 * 240.00169 * 2 1 3 18 18 C 1.34774 * 119.99927 * 88.67902 * 17 2 1 19 19 O 1.21686 * 120.00097 * 0.02562 * 18 17 2 20 20 C 1.46375 * 119.99773 * 180.02562 * 18 17 2 21 21 H 1.07997 * 120.00107 * 354.80498 * 20 18 17 22 22 C 1.40043 * 120.00205 * 174.80912 * 20 18 17 23 23 N 1.30682 * 119.99881 * 5.20623 * 22 20 18 24 24 Si 1.86801 * 120.00525 * 185.20699 * 22 20 18 25 25 H 1.48502 * 109.46866 * 94.99691 * 24 22 20 26 26 H 1.48499 * 109.47386 * 214.99732 * 24 22 20 27 27 H 1.48504 * 109.46964 * 334.99746 * 24 22 20 28 28 H 1.08994 * 109.47567 * 60.00315 * 1 2 3 29 29 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47097 * 299.99536 * 1 2 3 31 31 H 1.09000 * 109.47421 * 176.86480 * 4 2 1 32 32 H 1.09001 * 109.47193 * 56.86751 * 4 2 1 33 33 H 1.08999 * 109.48979 * 63.21623 * 6 5 4 34 34 H 1.09005 * 109.48278 * 303.15197 * 6 5 4 35 35 H 1.09000 * 109.48737 * 181.63179 * 7 6 5 36 36 H 1.09004 * 109.48811 * 61.56494 * 7 6 5 37 37 H 1.07997 * 120.03871 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.96511 * 179.97438 * 11 10 9 39 39 H 1.07992 * 119.92593 * 179.72620 * 12 11 10 40 40 H 1.07996 * 119.95792 * 179.97438 * 13 12 11 41 41 H 1.07995 * 120.04025 * 180.02562 * 14 13 12 42 42 H 1.08999 * 109.48721 * 60.64949 * 15 8 7 43 43 H 1.09004 * 109.48853 * 180.70994 * 15 8 7 44 44 H 1.08996 * 109.48959 * 296.78735 * 16 5 4 45 45 H 1.09000 * 109.48289 * 56.84850 * 16 5 4 46 46 H 0.96997 * 119.99635 * 268.68540 * 17 2 1 47 47 H 0.96995 * 119.99950 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6131 0.0136 2.4474 6 6 2.1647 -0.5979 3.6646 7 6 1.6339 0.1466 4.8920 8 7 2.0093 1.5645 4.8018 9 6 1.6034 2.2632 5.9411 10 6 1.8646 3.6228 6.0538 11 6 1.4624 4.3106 7.1818 12 6 0.7998 3.6472 8.1983 13 6 0.5371 2.2939 8.0889 14 6 0.9366 1.6001 6.9636 15 6 1.4578 2.1760 3.5846 16 6 1.9886 1.4316 2.3574 17 7 2.0183 -0.6906 -1.1962 18 6 2.2176 -0.0021 -2.3376 19 8 1.9923 1.1931 -2.3744 20 6 2.7051 -0.6923 -3.5329 21 1 2.9848 -1.7340 -3.4787 22 6 2.8089 -0.0017 -4.7468 23 7 2.5683 1.2820 -4.7909 24 14 3.2911 -0.9155 -6.3030 25 1 2.0665 -1.3147 -7.0422 26 1 4.1202 -0.0304 -7.1601 27 1 4.0700 -2.1278 -5.9440 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.1286 -0.7701 1.2216 32 1 1.6316 -1.7314 1.2778 33 1 3.2526 -0.5340 3.6429 34 1 1.8625 -1.6441 3.7150 35 1 2.0644 -0.2869 5.7946 36 1 0.5479 0.0595 4.9286 37 1 2.3825 4.1414 5.2605 38 1 1.6655 5.3676 7.2703 39 1 0.4902 4.1864 9.0813 40 1 0.0198 1.7788 8.8848 41 1 0.7309 0.5434 6.8785 42 1 0.3699 2.1121 3.6064 43 1 1.7599 3.2221 3.5342 44 1 3.0745 1.5186 2.3207 45 1 1.5581 1.8650 1.4547 46 1 2.1982 -1.6433 -1.1667 47 1 2.6405 1.7604 -5.6316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153882857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:44 Heat of formation + Delta-G solvation = 8.087853 kcal Electronic energy + Delta-G solvation = -26290.087617 eV Core-core repulsion = 22665.811364 eV Total energy + Delta-G solvation = -3624.276253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.57342 -38.73908 -37.45593 -35.82329 -33.65850 -32.35345 -31.80980 -30.63533 -30.44157 -29.16437 -26.98583 -26.09620 -24.55165 -24.19792 -22.17744 -21.80292 -20.76448 -19.81801 -19.22295 -17.93981 -17.18583 -16.16736 -15.78843 -15.51217 -15.24982 -15.17406 -14.88098 -14.80449 -14.21247 -14.14850 -13.89058 -13.72071 -13.61358 -13.19386 -12.81842 -12.59942 -12.33257 -12.19763 -11.86261 -11.74969 -11.54355 -11.46309 -11.37386 -11.13524 -11.05598 -10.96211 -10.89242 -10.70783 -10.46122 -10.21702 -10.02449 -9.85032 -9.14982 -8.85055 -8.31549 -8.01761 -7.61130 -7.50727 -6.19054 -4.63514 1.17889 1.19871 3.13707 3.20906 3.24283 3.39583 3.71677 3.79398 4.12635 4.56670 4.59246 4.68075 4.74987 4.85179 4.91349 4.99034 5.01842 5.13196 5.20732 5.26444 5.31263 5.34582 5.40907 5.48614 5.51955 5.58763 5.72673 5.78388 5.79889 5.81691 5.95190 5.95676 6.09032 6.10429 6.20194 6.29584 6.35018 6.47930 6.55427 6.70062 6.77696 6.88167 7.01653 7.09978 7.14393 7.43940 7.94270 8.12980 8.34271 9.02991 9.54672 10.60339 10.79186 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033385 B = 0.002261 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.492555 B =12378.800536 C =12837.991981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.149 3.851 3 H 0.080 0.920 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.055 3.945 7 C 0.056 3.944 8 N -0.492 5.492 9 C 0.117 3.883 10 C -0.142 4.142 11 C -0.095 4.095 12 C -0.152 4.152 13 C -0.095 4.095 14 C -0.173 4.173 15 C 0.063 3.937 16 C 0.046 3.954 17 N -0.763 5.763 18 C 0.557 3.443 19 O -0.581 6.581 20 C -0.546 4.546 21 H 0.067 0.933 22 C 0.087 3.913 23 N -0.768 5.768 24 Si 0.907 3.093 25 H -0.273 1.273 26 H -0.279 1.279 27 H -0.265 1.265 28 H 0.054 0.946 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.126 0.874 42 H 0.054 0.946 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.378 0.622 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -0.393 23.411 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.077 4.077 5 N -0.257 5.257 6 C -0.073 4.073 7 C -0.072 4.072 8 N -0.207 5.207 9 C 0.019 3.981 10 C -0.162 4.162 11 C -0.114 4.114 12 C -0.171 4.171 13 C -0.114 4.114 14 C -0.194 4.194 15 C -0.062 4.062 16 C -0.082 4.082 17 N -0.418 5.418 18 C 0.361 3.639 19 O -0.464 6.464 20 C -0.583 4.583 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.397 5.397 24 Si 0.732 3.268 25 H -0.198 1.198 26 H -0.205 1.205 27 H -0.189 1.189 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.210 0.790 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.029 0.635 23.162 23.368 hybrid contribution 0.507 -1.011 -0.700 1.330 sum -2.523 -0.376 22.462 22.607 Atomic orbital electron populations 1.22058 0.96387 1.00940 1.01281 1.20539 0.93672 0.97401 0.84181 0.90238 1.22397 0.98059 0.97851 0.89370 1.62173 1.59266 1.02301 1.01988 1.22173 0.97797 0.98254 0.89120 1.22338 0.99638 0.86694 0.98480 1.59245 1.56496 1.03272 1.01731 1.19014 0.94028 0.92951 0.92058 1.20836 1.03024 0.92975 0.99380 1.21018 0.97367 0.99691 0.93328 1.21054 1.01853 0.94792 0.99439 1.20994 0.98743 0.94424 0.97191 1.21321 1.01427 1.00744 0.95894 1.22336 0.98177 0.98412 0.87259 1.22356 0.99344 0.88581 0.97915 1.46158 1.73684 1.11063 1.10869 1.18190 0.77560 0.86532 0.81602 1.90588 1.56528 1.15405 1.83852 1.20890 1.46662 0.97749 0.93034 0.91468 1.25704 0.93128 0.94445 0.99937 1.70028 1.35538 1.07759 1.26339 0.86375 0.78955 0.80005 0.81508 1.19818 1.20477 1.18922 0.92724 0.93696 0.92445 0.94464 0.90632 0.93900 0.89901 0.89825 0.92647 0.85741 0.86003 0.86379 0.86235 0.85613 0.92807 0.89637 0.93697 0.88409 0.79049 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.35 37.15 0.35 -2.28 16 2 C 0.15 2.78 2.24 -67.93 -0.15 2.63 16 3 H 0.08 1.70 5.38 -51.93 -0.28 1.42 16 4 C 0.05 0.75 4.75 -3.83 -0.02 0.73 16 5 N -0.53 -6.90 4.19 -234.46 -0.98 -7.88 16 6 C 0.06 0.60 5.62 -3.76 -0.02 0.58 16 7 C 0.06 0.56 4.29 -3.77 -0.02 0.54 16 8 N -0.49 -5.54 4.75 -170.96 -0.81 -6.35 16 9 C 0.12 1.28 5.64 -83.79 -0.47 0.80 16 10 C -0.14 -1.45 9.19 -39.38 -0.36 -1.81 16 11 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 12 C -0.15 -1.29 10.04 -39.54 -0.40 -1.69 16 13 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 14 C -0.17 -1.67 8.82 -39.38 -0.35 -2.02 16 15 C 0.06 0.74 5.38 -3.77 -0.02 0.72 16 16 C 0.05 0.62 5.12 -3.77 -0.02 0.60 16 17 N -0.76 -16.78 5.04 -55.22 -0.28 -17.06 16 18 C 0.56 15.69 7.74 -12.99 -0.10 15.59 16 19 O -0.58 -18.59 14.64 5.20 0.08 -18.51 16 20 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 16 21 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 22 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 23 N -0.77 -23.02 11.85 55.55 0.66 -22.37 16 24 Si 0.91 20.16 29.56 -169.99 -5.03 15.13 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.72 7.17 -51.93 -0.37 0.35 16 36 H 0.06 0.56 7.58 -51.93 -0.39 0.17 16 37 H 0.12 1.20 7.19 -52.49 -0.38 0.82 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 1.06 5.81 -52.49 -0.31 0.75 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.09 0.92 6.82 -51.93 -0.35 0.56 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.46 5.91 -51.93 -0.31 1.15 16 46 H 0.38 7.34 8.62 -40.82 -0.35 6.99 16 47 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -33.78 372.26 -10.90 -44.68 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.34 Total: 8.22 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.81 Total: -1.47 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -1.42 Total: -53.66 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.08 Total: -18.51 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.78 -10.90 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153882857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.768 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds