Wall clock time and date at job start Fri Apr 10 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46493 * 2 1 4 4 C 1.46502 * 119.99648 * 90.00547 * 3 2 1 5 5 C 1.50706 * 109.46622 * 269.99313 * 4 3 2 6 6 H 1.08005 * 120.00138 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99722 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47399 * 119.99815 * 9 7 5 12 12 H 1.48498 * 109.47295 * 240.00422 * 9 7 5 13 13 C 1.34769 * 119.99980 * 269.99370 * 3 2 1 14 14 O 1.21279 * 120.00146 * 180.02562 * 13 3 2 15 15 C 1.50705 * 120.00183 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47180 * 179.97438 * 15 13 3 17 17 C 1.47440 * 111.00235 * 69.87021 * 16 15 13 18 18 C 1.54313 * 107.23257 * 123.25924 * 17 16 15 19 19 C 1.55140 * 103.02292 * 22.28408 * 18 17 16 20 20 C 1.47843 * 111.00224 * 190.71782 * 16 15 13 21 21 H 1.09001 * 110.37006 * 332.46017 * 20 16 15 22 22 C 1.50694 * 110.37649 * 94.79964 * 20 16 15 23 23 C 1.38652 * 120.78871 * 39.72862 * 22 20 16 24 24 C 1.38207 * 119.16152 * 179.79882 * 23 22 20 25 25 N 1.31866 * 120.76493 * 0.47816 * 24 23 22 26 26 C 1.31869 * 121.72704 * 359.74552 * 25 24 23 27 27 C 1.38212 * 120.76223 * 0.02562 * 26 25 24 28 28 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47638 * 299.99491 * 1 2 3 30 30 H 1.09007 * 109.47503 * 60.00296 * 1 2 3 31 31 H 1.08999 * 109.47257 * 240.00578 * 2 1 3 32 32 H 1.08997 * 109.46953 * 119.99793 * 2 1 3 33 33 H 1.08996 * 109.47065 * 149.99995 * 4 3 2 34 34 H 1.08994 * 109.47523 * 29.99471 * 4 3 2 35 35 H 0.97000 * 119.99651 * 0.02562 * 8 7 5 36 36 H 1.08999 * 109.46882 * 299.99369 * 15 13 3 37 37 H 1.08998 * 109.46787 * 59.99447 * 15 13 3 38 38 H 1.09003 * 109.88911 * 242.66662 * 17 16 15 39 39 H 1.08995 * 109.89102 * 3.69094 * 17 16 15 40 40 H 1.09004 * 110.70631 * 140.66909 * 18 17 16 41 41 H 1.09007 * 110.70599 * 263.72381 * 18 17 16 42 42 H 1.09002 * 110.98930 * 82.43716 * 19 18 17 43 43 H 1.08995 * 110.99413 * 206.21856 * 19 18 17 44 44 H 1.08003 * 120.41924 * 359.97438 * 23 22 20 45 45 H 1.07997 * 119.61476 * 180.20411 * 24 23 22 46 46 H 1.08000 * 119.62373 * 179.97438 * 26 25 24 47 47 H 1.08008 * 120.41468 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 1.2688 5 6 1.0064 2.7822 1.7038 6 1 0.1154 2.7247 1.0962 7 6 0.9949 3.5055 2.8775 8 7 2.0801 3.5761 3.6172 9 14 -0.5615 4.3867 3.4164 10 1 -1.6342 4.1527 2.4164 11 1 -0.9943 3.8639 4.7373 12 1 -0.2938 5.8433 3.5241 13 6 2.2429 2.0166 -1.1671 14 8 2.6474 3.1599 -1.1672 15 6 1.9914 1.3063 -2.4723 16 7 2.3091 2.2065 -3.5888 17 6 3.7620 2.4391 -3.6831 18 6 4.2006 2.0223 -5.1027 19 6 2.8828 2.1128 -5.9163 20 6 1.8380 1.6450 -4.8728 21 1 1.8117 0.5564 -4.8239 22 6 0.4749 2.1890 -5.2147 23 6 0.1611 3.5184 -4.9767 24 6 -1.0979 3.9828 -5.3071 25 7 -1.9979 3.1756 -5.8337 26 6 -1.7361 1.9049 -6.0696 27 6 -0.4972 1.3708 -5.7695 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0642 2.7986 1.1385 34 1 2.5505 1.3452 2.0284 35 1 2.8887 3.1194 3.3367 36 1 2.6214 0.4188 -2.5302 37 1 0.9433 1.0124 -2.5299 38 1 3.9797 3.4951 -3.5227 39 1 4.2831 1.8362 -2.9394 40 1 4.9444 2.7156 -5.4954 41 1 4.5876 1.0033 -5.1029 42 1 2.6880 3.1380 -6.2313 43 1 2.9066 1.4409 -6.7742 44 1 0.8924 4.1834 -4.5412 45 1 -1.3490 5.0178 -5.1280 46 1 -2.4988 1.2740 -6.5016 47 1 -0.2890 0.3291 -5.9647 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153993885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:41:05 Heat of formation + Delta-G solvation = 7.215600 kcal Electronic energy + Delta-G solvation = -27356.275262 eV Core-core repulsion = 23731.961185 eV Total energy + Delta-G solvation = -3624.314077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.54183 -39.45436 -38.19868 -35.34049 -33.20347 -33.01604 -32.11849 -31.18684 -29.97218 -28.46305 -27.69950 -25.62767 -23.65828 -23.29746 -22.78159 -22.60082 -21.30086 -20.41548 -18.44411 -17.18954 -17.03848 -16.71798 -16.16385 -15.71914 -15.59509 -15.39078 -14.75283 -14.54747 -13.96662 -13.74474 -13.71544 -13.53896 -13.36590 -13.28617 -13.13999 -12.72906 -12.54406 -12.19502 -11.96511 -11.81531 -11.71586 -11.59068 -11.30778 -11.28839 -11.22576 -10.91822 -10.81141 -10.64055 -10.41070 -10.11552 -9.59976 -9.46992 -9.13849 -9.09237 -8.99512 -8.35450 -8.30310 -7.62154 -6.35497 -4.06951 1.12713 1.23372 3.34233 3.45224 3.49971 3.52541 3.63117 3.80076 4.04426 4.38404 4.45578 4.51032 4.55483 4.73291 4.76456 4.84001 5.02642 5.08463 5.10804 5.18970 5.23644 5.29885 5.37127 5.39379 5.46287 5.57409 5.61889 5.63301 5.70383 5.71150 5.76079 5.82149 5.92123 5.99226 6.04495 6.20733 6.24207 6.32618 6.69712 6.70576 6.78740 6.92108 6.95195 7.14543 7.44224 7.96174 8.06939 8.31580 8.47932 8.81321 9.06365 9.62265 11.01607 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012401 B = 0.004056 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.269098 B = 6901.858368 C = 7846.585428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.597 5.597 4 C 0.238 3.762 5 C -0.599 4.599 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 1.074 2.926 10 H -0.290 1.290 11 H -0.287 1.287 12 H -0.286 1.286 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.035 3.965 16 N -0.502 5.502 17 C 0.054 3.946 18 C -0.143 4.143 19 C -0.115 4.115 20 C 0.108 3.892 21 H 0.066 0.934 22 C -0.027 4.027 23 C -0.133 4.133 24 C 0.092 3.908 25 N -0.490 5.490 26 C 0.091 3.909 27 C -0.173 4.173 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.032 0.968 34 H 0.019 0.981 35 H 0.267 0.733 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.151 0.849 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 -9.222 -20.363 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.330 5.330 4 C 0.118 3.882 5 C -0.638 4.638 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.549 5.549 9 Si 0.903 3.097 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.212 1.212 13 C 0.294 3.706 14 O -0.397 6.397 15 C -0.096 4.096 16 N -0.226 5.226 17 C -0.073 4.073 18 C -0.182 4.182 19 C -0.154 4.154 20 C -0.001 4.001 21 H 0.084 0.916 22 C -0.036 4.036 23 C -0.153 4.153 24 C -0.064 4.064 25 N -0.199 5.199 26 C -0.066 4.066 27 C -0.193 4.193 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.161 0.839 45 H 0.171 0.829 46 H 0.169 0.831 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.586 -6.844 -19.232 20.475 hybrid contribution 1.695 -2.279 -0.939 2.991 sum 0.109 -9.123 -20.171 22.139 Atomic orbital electron populations 1.22223 0.96179 1.00860 1.03498 1.21370 0.94736 0.83656 1.01391 1.48074 1.64464 1.13167 1.07339 1.19315 0.97901 0.92068 0.78882 1.22301 0.97763 1.34406 1.09348 0.92856 1.25767 1.03265 0.96013 0.93444 1.70747 1.02072 1.42344 1.39744 0.83468 0.74239 0.76534 0.75469 1.21600 1.21379 1.21231 1.20058 0.79035 0.86981 0.84569 1.90663 1.45169 1.17054 1.86834 1.22263 1.02387 0.93945 0.91045 1.63064 1.14636 1.44059 1.00877 1.22768 0.86411 1.03008 0.95131 1.22862 0.97555 1.01772 0.96000 1.22708 0.93367 1.02472 0.96820 1.21458 0.91562 0.97034 0.90016 0.91564 1.20091 0.94646 0.93929 0.94955 1.22098 0.98292 0.96291 0.98619 1.22815 0.89569 0.99659 0.94338 1.67638 1.35033 1.04910 1.12292 1.22639 0.95292 0.91808 0.96868 1.21978 0.94675 1.00763 1.01923 0.92801 0.90432 0.93349 0.92280 0.90843 0.95021 0.96305 0.92255 0.92545 0.88714 0.89507 0.92743 0.90402 0.91524 0.90184 0.90584 0.83876 0.82853 0.83123 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 1.81 5.98 -4.04 -0.02 1.78 16 3 N -0.60 -12.54 2.46 -175.06 -0.43 -12.97 16 4 C 0.24 6.16 4.52 -5.19 -0.02 6.13 16 5 C -0.60 -17.08 8.92 -34.44 -0.31 -17.39 16 6 H 0.05 1.55 7.42 -52.48 -0.39 1.16 16 7 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 8 N -0.91 -27.93 13.65 55.43 0.76 -27.17 16 9 Si 1.07 26.09 29.90 -169.99 -5.08 21.01 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.47 7.32 -10.99 -0.08 10.39 16 14 O -0.52 -12.97 15.12 5.56 0.08 -12.88 16 15 C 0.03 0.52 3.58 -4.98 -0.02 0.51 16 16 N -0.50 -7.04 3.88 -226.20 -0.88 -7.92 16 17 C 0.05 0.71 5.65 -2.84 -0.02 0.69 16 18 C -0.14 -1.33 6.94 -24.91 -0.17 -1.50 16 19 C -0.12 -1.04 6.48 -24.59 -0.16 -1.20 16 20 C 0.11 1.16 2.62 -67.34 -0.18 0.99 16 21 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16 22 C -0.03 -0.32 5.05 -104.32 -0.53 -0.85 16 23 C -0.13 -1.72 9.32 -39.44 -0.37 -2.08 16 24 C 0.09 1.18 11.18 -17.55 -0.20 0.99 16 25 N -0.49 -6.51 10.36 -13.25 -0.14 -6.65 16 26 C 0.09 1.00 11.18 -17.55 -0.20 0.81 16 27 C -0.17 -1.77 9.79 -39.44 -0.39 -2.16 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.47 7.26 -51.93 -0.38 1.09 16 30 H 0.05 0.76 7.22 -51.93 -0.37 0.39 16 31 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 32 H 0.07 1.15 7.89 -51.93 -0.41 0.74 16 33 H 0.03 0.92 7.29 -51.93 -0.38 0.54 16 34 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 35 H 0.27 8.11 7.22 -40.82 -0.29 7.82 16 36 H 0.06 0.72 7.22 -51.93 -0.38 0.34 16 37 H 0.09 1.38 7.11 -51.93 -0.37 1.01 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.76 7.31 -51.93 -0.38 0.38 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.14 1.95 7.83 -52.48 -0.41 1.54 16 45 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -34.64 379.46 -9.83 -44.47 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.49 Total: 1.09 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.37 Total: -4.71 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.69 Total: -54.71 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.64 -9.83 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153993885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.686 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds