Wall clock time and date at job start Fri Apr 10 2020 23:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47562 * 2 1 4 4 C 1.50704 * 109.47087 * 240.00066 * 2 1 3 5 5 O 1.21277 * 120.00007 * 239.99977 * 4 2 1 6 6 N 1.34779 * 119.99970 * 60.00234 * 4 2 1 7 7 C 1.46503 * 120.00050 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47161 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.49998 * 304.94066 * 8 7 6 10 10 C 1.53030 * 109.49942 * 184.83768 * 8 7 6 11 11 C 1.53041 * 109.54042 * 178.68114 * 10 8 7 12 12 C 1.53194 * 109.30664 * 61.37045 * 11 10 8 13 13 N 1.46928 * 108.77476 * 305.35983 * 12 11 10 14 14 C 1.36940 * 120.63307 * 233.58612 * 13 12 11 15 15 H 1.07992 * 119.99969 * 152.30840 * 14 13 12 16 16 C 1.38812 * 119.99756 * 332.31472 * 14 13 12 17 17 N 1.31614 * 120.00372 * 342.59760 * 16 14 13 18 18 Si 1.86806 * 119.99701 * 162.59769 * 16 14 13 19 19 H 1.48499 * 109.47189 * 94.34636 * 18 16 14 20 20 H 1.48503 * 109.46816 * 214.34614 * 18 16 14 21 21 H 1.48499 * 109.47029 * 334.34670 * 18 16 14 22 22 C 1.46918 * 118.73606 * 53.61611 * 13 12 11 23 23 C 1.50703 * 109.47120 * 120.00418 * 2 1 3 24 24 C 1.38672 * 120.41653 * 239.97553 * 23 2 1 25 25 C 1.38627 * 118.42168 * 180.02562 * 24 23 2 26 26 C 1.38228 * 119.16049 * 359.97438 * 25 24 23 27 27 N 1.31854 * 120.76307 * 0.02562 * 26 25 24 28 28 C 1.31892 * 121.72732 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46982 * 299.99914 * 1 2 3 30 30 H 1.09004 * 109.46874 * 59.99749 * 1 2 3 31 31 H 1.09003 * 109.47059 * 179.97438 * 1 2 3 32 32 H 0.97004 * 119.99904 * 0.02562 * 6 4 2 33 33 H 1.08994 * 109.47084 * 300.00163 * 7 6 4 34 34 H 1.09003 * 109.46640 * 60.00263 * 7 6 4 35 35 H 1.08993 * 109.46309 * 298.70878 * 10 8 7 36 36 H 1.09006 * 109.45995 * 58.66721 * 10 8 7 37 37 H 1.08990 * 109.50082 * 301.41923 * 11 10 8 38 38 H 1.08995 * 109.52645 * 181.33143 * 11 10 8 39 39 H 1.09003 * 109.58542 * 185.57924 * 12 11 10 40 40 H 1.08994 * 109.71030 * 65.22548 * 12 11 10 41 41 H 0.96995 * 120.00090 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.58950 * 186.59819 * 22 13 12 43 43 H 1.09000 * 109.59058 * 66.17422 * 22 13 12 44 44 H 1.08003 * 120.78964 * 0.04353 * 24 23 2 45 45 H 1.07995 * 120.41859 * 180.02562 * 25 24 23 46 46 H 1.07996 * 119.62158 * 180.30054 * 26 25 24 47 47 H 1.07995 * 119.61960 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 6 1.6849 -0.2193 -4.9000 9 1 0.5984 -0.1426 -4.8573 10 6 2.0934 -1.0067 -6.1470 11 6 1.5550 -0.3040 -7.3954 12 6 2.1631 1.0990 -7.4888 13 7 1.8986 1.8137 -6.2326 14 6 1.2951 3.0429 -6.2429 15 1 0.7105 3.3645 -5.3938 16 6 1.4348 3.8754 -7.3448 17 7 2.3963 3.6574 -8.2167 18 14 0.2579 5.3052 -7.5903 19 1 0.8494 6.5382 -7.0114 20 1 0.0185 5.5056 -9.0421 21 1 -1.0296 5.0085 -6.9125 22 6 2.2944 1.1847 -4.9652 23 6 2.0323 -0.7105 1.2304 24 6 2.8305 -0.0451 2.1487 25 6 3.2700 -0.7387 3.2656 26 6 2.9002 -2.0609 3.4261 27 7 2.1397 -2.6617 2.5321 28 6 1.7034 -2.0332 1.4578 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.1494 0.5390 -2.5436 33 1 3.2855 -0.9398 -3.6506 34 1 1.8325 -1.9680 -3.6510 35 1 3.1806 -1.0618 -6.2017 36 1 1.6813 -2.0143 -6.0914 37 1 0.4698 -0.2265 -7.3297 38 1 1.8259 -0.8775 -8.2817 39 1 1.7089 1.6396 -8.3193 40 1 3.2389 1.0236 -7.6468 41 1 2.4941 4.2394 -8.9865 42 1 1.9270 1.7817 -4.1305 43 1 3.3810 1.1139 -4.9161 44 1 3.1030 0.9889 1.9974 45 1 3.8927 -0.2519 4.0015 46 1 3.2343 -2.6068 4.2959 47 1 1.0825 -2.5585 0.7473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267247889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:31 Heat of formation + Delta-G solvation = -16.881427 kcal Electronic energy + Delta-G solvation = -26385.756885 eV Core-core repulsion = 22760.397883 eV Total energy + Delta-G solvation = -3625.359003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.62563 -40.43880 -39.31671 -36.27157 -35.61453 -34.62973 -33.05591 -32.29431 -31.96709 -30.48535 -27.28869 -26.97066 -25.68328 -24.47675 -23.87319 -23.40439 -22.33845 -21.20021 -20.46762 -18.70229 -18.17568 -18.06090 -17.21208 -17.02726 -16.78349 -16.42127 -15.78049 -15.73894 -15.41283 -15.07461 -14.97320 -14.67810 -14.54521 -14.48005 -13.99390 -13.94498 -13.79919 -13.70051 -13.42824 -13.22004 -12.99322 -12.87382 -12.50152 -12.44667 -12.28103 -12.23810 -11.96603 -11.81462 -11.57201 -11.32663 -11.09147 -10.89410 -10.60464 -10.51731 -10.37411 -10.04814 -9.88444 -8.66948 -7.85483 -5.30709 0.18282 0.38502 1.47859 1.50230 1.59451 1.63724 2.22394 2.52565 2.92851 3.29774 3.42703 3.60668 3.67223 3.77359 3.99666 4.01279 4.02860 4.06782 4.09146 4.16376 4.23921 4.40621 4.42622 4.58385 4.61566 4.66851 4.77143 4.81473 4.88610 4.89711 4.91131 4.94394 5.01863 5.11203 5.20712 5.21747 5.24773 5.34120 5.36225 5.40180 5.50176 5.58768 5.68252 5.79258 5.80777 6.40223 6.56428 7.06064 7.16183 7.24553 7.87925 8.40078 9.21044 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.002676 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.442528 B =10461.059634 C =11329.200169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 H 0.131 0.869 4 C 0.515 3.485 5 O -0.579 6.579 6 N -0.715 5.715 7 C 0.138 3.862 8 C -0.099 4.099 9 H 0.079 0.921 10 C -0.098 4.098 11 C -0.130 4.130 12 C 0.172 3.828 13 N -0.609 5.609 14 C -0.259 4.259 15 H 0.074 0.926 16 C -0.054 4.054 17 N -0.938 5.938 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.265 1.265 22 C 0.153 3.847 23 C -0.126 4.126 24 C -0.075 4.075 25 C -0.171 4.171 26 C 0.079 3.921 27 N -0.520 5.520 28 C 0.111 3.889 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.413 0.587 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.051 0.949 40 H -0.009 1.009 41 H 0.248 0.752 42 H 0.060 0.940 43 H 0.003 0.997 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.177 0.823 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -7.579 19.712 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.083 4.083 3 H 0.149 0.851 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.366 5.366 7 C 0.014 3.986 8 C -0.120 4.120 9 H 0.097 0.903 10 C -0.136 4.136 11 C -0.169 4.169 12 C 0.046 3.954 13 N -0.332 5.332 14 C -0.389 4.389 15 H 0.091 0.909 16 C -0.249 4.249 17 N -0.584 5.584 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.190 1.190 22 C 0.028 3.972 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.190 4.190 26 C -0.077 4.077 27 N -0.229 5.229 28 C -0.046 4.046 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.249 0.751 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.009 0.991 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.021 0.979 44 H 0.178 0.822 45 H 0.184 0.816 46 H 0.194 0.806 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.984 -9.060 19.769 21.950 hybrid contribution -0.039 2.000 -0.995 2.234 sum -3.023 -7.061 18.773 20.284 Atomic orbital electron populations 1.21826 0.90100 1.03159 1.04565 1.20274 0.99108 1.00735 0.88163 0.85114 1.20934 0.79477 0.84138 0.85265 1.90710 1.39652 1.28241 1.87307 1.45991 1.53257 1.32296 1.05086 1.21231 0.98481 0.95868 0.83032 1.21710 1.00967 0.95729 0.93553 0.90251 1.21339 1.00341 0.98506 0.93429 1.21989 1.00166 0.96710 0.97987 1.20630 0.95025 0.90483 0.89230 1.44318 1.69865 1.17571 1.01471 1.19557 1.23032 0.92892 1.03406 0.90864 1.25811 0.98972 1.00488 0.99663 1.70202 1.32117 1.40901 1.15192 0.85292 0.79459 0.79340 0.76534 1.21416 1.22347 1.18989 1.21022 0.95199 0.92501 0.88522 1.20487 0.99902 0.95607 0.96838 1.21892 0.93754 1.01509 0.92950 1.22465 1.01464 0.95745 0.99330 1.23272 0.93387 0.93393 0.97648 1.67664 1.11865 1.39700 1.03650 1.22471 0.96721 0.91818 0.93543 0.89714 0.90004 0.92506 0.75055 0.92901 0.91218 0.92900 0.90300 0.92687 0.91431 0.93032 0.99118 0.94272 0.92121 0.97899 0.82212 0.81592 0.80628 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.91 71.98 0.64 -1.17 16 2 C -0.06 -1.04 2.92 -12.29 -0.04 -1.07 16 3 H 0.13 1.63 7.93 -2.39 -0.02 1.61 16 4 C 0.51 12.48 7.03 87.66 0.62 13.10 16 5 O -0.58 -19.02 15.12 -3.02 -0.05 -19.07 16 6 N -0.71 -16.15 5.22 -463.06 -2.42 -18.57 16 7 C 0.14 3.61 5.07 86.38 0.44 4.05 16 8 C -0.10 -2.93 2.38 -10.72 -0.03 -2.95 16 9 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 10 C -0.10 -2.94 5.17 30.62 0.16 -2.78 16 11 C -0.13 -4.62 6.08 30.67 0.19 -4.43 16 12 C 0.17 8.14 5.31 86.36 0.46 8.60 16 13 N -0.61 -29.17 2.99 -699.10 -2.09 -31.27 16 14 C -0.26 -13.55 9.58 84.03 0.81 -12.74 16 15 H 0.07 3.63 7.89 -2.91 -0.02 3.60 16 16 C -0.05 -2.95 4.91 84.86 0.42 -2.54 16 17 N -0.94 -54.93 11.19 21.65 0.24 -54.68 16 18 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 19 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 C 0.15 5.80 5.60 86.37 0.48 6.28 16 23 C -0.13 -2.54 4.40 -19.77 -0.09 -2.63 16 24 C -0.08 -1.22 9.81 22.47 0.22 -1.00 16 25 C -0.17 -2.52 10.11 22.36 0.23 -2.29 16 26 C 0.08 1.47 11.18 84.69 0.95 2.42 16 27 N -0.52 -13.05 10.36 -195.85 -2.03 -15.08 16 28 C 0.11 2.71 9.13 84.67 0.77 3.49 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.89 7.57 -2.39 -0.02 0.87 16 31 H 0.06 0.83 7.41 -2.39 -0.02 0.82 16 32 H 0.41 7.82 7.11 -92.71 -0.66 7.16 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 40 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.06 2.12 7.13 -2.39 -0.02 2.11 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.11 16 44 H 0.16 1.65 8.00 -2.91 -0.02 1.63 16 45 H 0.17 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.14 3.46 7.53 -2.91 -0.02 3.44 16 Total: -1.00 -72.10 375.84 2.20 -69.90 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.30 Total: 18.97 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 6.22 Total: 4.33 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.30 Total: -119.60 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.10 2.20 -69.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267247889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.021 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds