Wall clock time and date at job start Fri Apr 10 2020 23:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 H 1.08996 * 109.50522 * 59.64085 * 14 12 2 16 16 C 1.53116 * 109.49958 * 299.52541 * 14 12 2 17 17 C 1.53123 * 109.15901 * 182.40848 * 16 14 12 18 18 C 1.53032 * 109.27979 * 57.64927 * 17 16 14 19 19 N 1.46846 * 109.52656 * 300.82556 * 18 17 16 20 20 C 1.46904 * 110.99936 * 185.83976 * 19 18 17 21 21 C 1.50694 * 109.47165 * 65.78728 * 20 19 18 22 22 C 1.38675 * 120.41708 * 90.00116 * 21 20 19 23 23 C 1.38628 * 118.42035 * 180.02562 * 22 21 20 24 24 C 1.38225 * 119.16432 * 0.02562 * 23 22 21 25 25 N 1.31864 * 120.75962 * 359.97438 * 24 23 22 26 26 C 1.31884 * 121.72583 * 359.70800 * 25 24 23 27 27 C 1.46843 * 111.19660 * 61.73778 * 19 18 17 28 28 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 29 29 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 30 30 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 31 31 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 32 32 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 33 33 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.52591 * 302.30567 * 16 14 12 35 35 H 1.09000 * 109.52623 * 62.50059 * 16 14 12 36 36 H 1.09002 * 109.50177 * 297.71204 * 17 16 14 37 37 H 1.08998 * 109.53694 * 177.61645 * 17 16 14 38 38 H 1.09001 * 109.46035 * 180.80354 * 18 17 16 39 39 H 1.09002 * 109.46279 * 60.84205 * 18 17 16 40 40 H 1.08997 * 109.46733 * 185.78711 * 20 19 18 41 41 H 1.09003 * 109.47019 * 305.78756 * 20 19 18 42 42 H 1.08000 * 120.78984 * 359.97438 * 22 21 20 43 43 H 1.07999 * 120.42069 * 180.02562 * 23 22 21 44 44 H 1.08000 * 119.62438 * 180.02562 * 24 23 22 45 45 H 1.07998 * 119.61688 * 180.31122 * 26 25 24 46 46 H 1.09005 * 109.46200 * 178.24324 * 27 19 18 47 47 H 1.08998 * 109.46135 * 58.28131 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 1 0.7577 -2.5261 -0.8946 16 6 0.5087 -2.5618 1.2467 17 6 -0.2069 -3.9155 1.2634 18 6 0.8332 -5.0373 1.2214 19 7 1.6459 -4.9079 0.0052 20 6 2.5630 -6.0465 -0.1387 21 6 1.7679 -7.3065 -0.3645 22 6 1.4410 -7.7094 -1.6506 23 6 0.7078 -8.8750 -1.8105 24 6 0.3292 -9.5916 -0.6908 25 7 0.6580 -9.1783 0.5175 26 6 1.3598 -8.0778 0.7069 27 6 2.3794 -3.6359 -0.0104 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3632 -0.8900 -0.5138 31 1 1.6083 2.0285 0.5137 32 1 3.1499 1.1385 0.5139 33 1 4.0317 4.4431 -0.8505 34 1 1.1324 -2.4687 2.1358 35 1 -0.2294 -1.7598 1.2327 36 1 -0.8603 -3.9924 0.3943 37 1 -0.8001 -4.0030 2.1735 38 1 0.3264 -6.0024 1.2187 39 1 1.4775 -4.9681 2.0979 40 1 3.2231 -5.8760 -0.9891 41 1 3.1585 -6.1502 0.7684 42 1 1.7495 -7.1284 -2.5071 43 1 0.4359 -9.2189 -2.7975 44 1 -0.2417 -10.5010 -0.8068 45 1 1.6145 -7.7735 1.7113 46 1 2.9958 -3.5831 -0.9078 47 1 3.0165 -3.5733 0.8718 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604535636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:44 Heat of formation + Delta-G solvation = -17.771612 kcal Electronic energy + Delta-G solvation = -26605.527480 eV Core-core repulsion = 22980.129876 eV Total energy + Delta-G solvation = -3625.397604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49448 -40.96925 -39.15654 -36.67297 -35.54788 -34.61134 -33.18238 -32.23499 -31.97466 -29.68969 -27.64790 -27.38347 -25.77072 -24.57255 -24.29058 -23.70493 -22.49914 -20.95046 -19.93518 -18.68896 -18.00502 -17.84067 -17.33356 -17.26989 -16.82834 -16.38313 -16.32143 -15.80703 -15.59976 -15.21359 -14.95720 -14.65391 -14.57946 -14.24069 -14.07862 -13.98970 -13.85266 -13.56713 -13.52098 -13.44835 -13.08130 -12.85552 -12.77866 -12.57923 -12.43159 -12.31407 -12.19915 -11.84002 -11.75384 -11.60397 -11.31463 -10.69917 -10.64855 -10.46991 -10.35563 -9.95870 -9.41956 -9.35009 -8.22941 -6.38038 0.16782 0.39217 1.36169 1.40435 1.47822 1.82174 2.25947 2.41105 2.76651 3.06304 3.13836 3.54048 3.59722 3.73093 3.83396 3.89341 3.97941 4.10900 4.15081 4.15572 4.22506 4.29443 4.43880 4.49446 4.59100 4.60024 4.67958 4.71329 4.74723 4.77433 4.89505 4.90448 4.95110 4.96214 5.01214 5.10653 5.19575 5.24575 5.25519 5.38102 5.42586 5.55241 5.80103 5.83435 5.96863 6.05460 6.06535 6.68748 6.78293 7.04896 7.27283 7.47042 8.83923 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022949 B = 0.002639 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.783761 B =10606.002934 C =11176.766526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.607 5.607 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.501 3.499 13 O -0.600 6.600 14 C -0.086 4.086 15 H 0.114 0.886 16 C -0.118 4.118 17 C -0.104 4.104 18 C 0.047 3.953 19 N -0.530 5.530 20 C 0.097 3.903 21 C -0.129 4.129 22 C -0.064 4.064 23 C -0.168 4.168 24 C 0.084 3.916 25 N -0.512 5.512 26 C 0.093 3.907 27 C 0.088 3.912 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.024 0.976 32 H -0.004 1.004 33 H 0.267 0.733 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.033 0.967 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.145 0.855 43 H 0.161 0.839 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.066 0.934 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.407 -24.299 0.667 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.338 5.338 3 C 0.138 3.862 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.203 1.203 12 C 0.289 3.711 13 O -0.482 6.482 14 C -0.108 4.108 15 H 0.132 0.868 16 C -0.156 4.156 17 C -0.142 4.142 18 C -0.080 4.080 19 N -0.255 5.255 20 C -0.031 4.031 21 C -0.131 4.131 22 C -0.091 4.091 23 C -0.188 4.188 24 C -0.073 4.073 25 N -0.221 5.221 26 C -0.064 4.064 27 C -0.040 4.040 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.042 0.958 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.051 0.949 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.163 0.837 43 H 0.179 0.821 44 H 0.194 0.806 45 H 0.174 0.826 46 H 0.085 0.915 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.298 -24.594 1.057 27.086 hybrid contribution 1.614 1.414 -0.707 2.259 sum -9.685 -23.181 0.350 25.125 Atomic orbital electron populations 1.22090 0.78050 1.03873 1.02490 1.48133 1.08332 1.06281 1.71014 1.18749 0.91037 0.80431 0.96026 1.21670 1.36900 1.06576 0.93012 0.92874 1.25882 0.94886 0.96426 1.02052 1.70045 1.38860 1.14819 1.33126 0.85463 0.78883 0.77348 0.79104 1.18383 1.20330 1.20305 1.21279 0.87622 0.86524 0.75647 1.90625 1.16694 1.88211 1.52659 1.21196 0.97557 0.89471 1.02578 0.86831 1.21834 0.98734 1.00281 0.94738 1.21543 0.97173 0.91731 1.03744 1.22285 0.95668 1.00240 0.89813 1.61922 1.24037 1.00550 1.38963 1.20946 0.92905 0.87073 1.02127 1.20710 1.00627 0.97032 0.94770 1.21764 0.94556 0.95541 0.97190 1.22454 0.99010 0.95678 1.01643 1.23230 0.96729 0.99890 0.87412 1.67711 1.12449 1.15043 1.26876 1.22788 0.93887 0.90404 0.99307 1.21591 0.93834 0.87825 1.00784 0.90689 0.91620 0.88830 0.95807 0.98603 0.92385 0.93033 0.88688 0.90277 0.89051 0.89787 0.94903 0.89371 0.93229 0.83714 0.82145 0.80633 0.82631 0.91525 0.95692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.27 8.81 127.77 1.13 3.39 16 2 N -0.61 -25.88 2.86 -851.12 -2.43 -28.32 16 3 C 0.26 14.16 5.16 85.63 0.44 14.60 16 4 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 8 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 C 0.50 21.03 7.07 87.66 0.62 21.65 16 13 O -0.60 -31.59 15.56 -3.04 -0.05 -31.64 16 14 C -0.09 -2.50 1.88 -11.49 -0.02 -2.52 16 15 H 0.11 2.99 7.39 -2.39 -0.02 2.97 16 16 C -0.12 -2.63 4.90 30.67 0.15 -2.48 16 17 C -0.10 -1.75 6.09 30.65 0.19 -1.57 16 18 C 0.05 0.88 5.18 86.32 0.45 1.32 16 19 N -0.53 -11.38 4.65 -900.96 -4.19 -15.57 16 20 C 0.10 1.83 5.14 85.55 0.44 2.27 16 21 C -0.13 -2.24 4.89 -19.78 -0.10 -2.34 16 22 C -0.06 -0.98 9.86 22.47 0.22 -0.76 16 23 C -0.17 -2.13 10.11 22.36 0.23 -1.90 16 24 C 0.08 1.23 11.18 84.68 0.95 2.18 16 25 N -0.51 -9.91 10.36 -195.84 -2.03 -11.94 16 26 C 0.09 1.68 9.07 84.67 0.77 2.44 16 27 C 0.09 2.48 4.03 86.32 0.35 2.83 16 28 H 0.07 1.81 7.02 -2.39 -0.02 1.79 16 29 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 30 H 0.09 2.14 5.98 -2.39 -0.01 2.13 16 31 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 32 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 33 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.87 4.65 -2.39 -0.01 1.86 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.44 5.78 -2.39 -0.01 1.43 16 39 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16 41 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 42 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.16 2.43 7.98 -2.91 -0.02 2.40 16 46 H 0.07 2.08 7.99 -2.38 -0.02 2.06 16 47 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 Total: -1.00 -76.51 373.10 1.07 -75.44 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.95 Total: 12.69 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 6.51 Total: 8.59 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -8.36 Total: -112.20 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.05 Total: -31.64 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -76.51 1.07 -75.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604535636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.665 kcal (2) G-P(sol) polarization free energy of solvation -76.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds