Wall clock time and date at job start Fri Apr 10 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47032 * 2 1 4 4 H 1.08996 * 109.47118 * 304.99933 * 3 2 1 5 5 C 1.50698 * 109.46781 * 185.00295 * 3 2 1 6 6 H 1.08009 * 119.99669 * 239.99913 * 5 3 2 7 7 C 1.37872 * 120.00465 * 59.99813 * 5 3 2 8 8 N 1.31517 * 119.99783 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00115 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47231 * 59.99839 * 9 7 5 11 11 H 1.48506 * 109.47284 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47231 * 299.99696 * 9 7 5 13 13 N 1.46497 * 109.47135 * 64.99990 * 3 2 1 14 14 C 1.34776 * 119.99939 * 274.99891 * 13 3 2 15 15 O 1.21280 * 119.99923 * 359.97438 * 14 13 3 16 16 C 1.50703 * 119.99815 * 180.02562 * 14 13 3 17 17 C 1.53000 * 109.46801 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47398 * 305.00045 * 17 16 14 19 19 C 1.53002 * 109.47233 * 65.00219 * 17 16 14 20 20 C 1.50703 * 109.46912 * 184.99967 * 17 16 14 21 21 C 1.38237 * 119.99747 * 299.72651 * 20 17 16 22 22 C 1.38240 * 119.99788 * 179.81066 * 21 20 17 23 23 C 1.38235 * 119.99578 * 0.41968 * 22 21 20 24 24 C 1.50701 * 119.99697 * 179.79106 * 23 22 21 25 25 C 1.53002 * 109.47092 * 300.02442 * 24 23 22 26 26 C 1.53000 * 109.47338 * 60.02128 * 24 23 22 27 27 C 1.38229 * 120.00567 * 359.81184 * 23 22 21 28 28 C 1.38232 * 120.00112 * 120.00202 * 20 17 16 29 29 H 1.09000 * 109.47390 * 299.99874 * 1 2 3 30 30 H 1.08996 * 109.47048 * 60.00253 * 1 2 3 31 31 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47013 * 239.99446 * 2 1 3 33 33 H 1.09005 * 109.46896 * 119.99823 * 2 1 3 34 34 H 0.96999 * 119.99792 * 180.02562 * 8 7 5 35 35 H 0.96998 * 119.99759 * 95.00151 * 13 3 2 36 36 H 1.09002 * 109.47083 * 60.00009 * 16 14 13 37 37 H 1.08991 * 109.46995 * 300.00066 * 16 14 13 38 38 H 1.08996 * 109.47407 * 180.02562 * 19 17 16 39 39 H 1.09000 * 109.46986 * 299.99797 * 19 17 16 40 40 H 1.09002 * 109.47075 * 59.99068 * 19 17 16 41 41 H 1.08003 * 120.00234 * 0.02562 * 21 20 17 42 42 H 1.07995 * 120.00127 * 180.20954 * 22 21 20 43 43 H 1.08999 * 109.47396 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47485 * 59.99648 * 25 24 23 45 45 H 1.09003 * 109.47201 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47048 * 299.99528 * 25 24 23 47 47 H 1.08994 * 109.47377 * 179.97438 * 26 24 23 48 48 H 1.08993 * 109.47301 * 300.00138 * 26 24 23 49 49 H 1.09001 * 109.46960 * 60.00402 * 26 24 23 50 50 H 1.07999 * 120.00657 * 179.97438 * 27 23 22 51 51 H 1.08005 * 119.99991 * 359.97438 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4061 0.3365 -2.1729 9 14 6.0050 0.8799 -1.3811 10 1 6.5966 0.1452 -0.2343 11 1 6.3978 0.2166 -2.6504 12 1 6.5005 2.2798 -1.3809 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3392 2.6327 0.4340 16 6 0.0367 3.3386 2.6544 17 6 -1.3822 3.8953 2.5207 18 1 -1.4346 4.5517 1.6520 19 6 -2.3693 2.7394 2.3468 20 6 -1.7349 4.6748 3.7613 21 6 -1.7421 4.0474 4.9930 22 6 -2.0619 4.7633 6.1315 23 6 -2.3829 6.1046 6.0370 24 6 -2.7361 6.8840 7.2776 25 6 -3.9625 6.2558 7.9426 26 6 -1.5566 6.8543 8.2516 27 6 -2.3804 6.7308 4.8048 28 6 -2.0569 6.0158 3.6668 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8292 -0.0620 -2.9494 35 1 2.2719 2.1231 1.9977 36 1 0.7281 4.1541 2.8666 37 1 0.0680 2.6146 3.4685 38 1 -3.3801 3.1360 2.2510 39 1 -2.1142 2.1756 1.4495 40 1 -2.3169 2.0830 3.2154 41 1 -1.4945 2.9987 5.0663 42 1 -2.0642 4.2740 7.0942 43 1 -2.9582 7.9163 7.0072 44 1 -3.7405 5.2235 8.2130 45 1 -4.2183 6.8198 8.8396 46 1 -4.8029 6.2770 7.2487 47 1 -1.8118 7.4184 9.1486 48 1 -1.3345 5.8221 8.5220 49 1 -0.6828 7.3019 7.7779 50 1 -2.6316 7.7786 4.7309 51 1 -2.0552 6.5051 2.7039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183881253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:07 Heat of formation + Delta-G solvation = -52.071168 kcal Electronic energy + Delta-G solvation = -26516.009511 eV Core-core repulsion = 22992.664910 eV Total energy + Delta-G solvation = -3523.344601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04510 -39.01480 -36.50096 -35.08192 -33.68304 -32.34980 -30.99451 -30.95980 -29.08395 -27.76956 -27.43509 -26.49060 -23.90944 -23.04911 -22.91123 -21.06221 -20.14476 -19.59034 -19.20829 -17.22305 -16.55068 -15.80731 -15.52565 -15.18562 -14.95306 -14.88392 -14.34068 -14.14138 -13.97762 -13.81658 -13.65152 -13.24217 -13.07718 -12.88380 -12.67413 -12.58458 -12.40203 -12.11963 -11.80357 -11.58778 -11.48780 -11.38314 -11.22804 -11.19844 -10.99756 -10.96066 -10.88122 -10.79943 -10.59604 -10.48697 -10.31136 -10.12194 -9.60328 -9.03587 -8.95668 -8.84514 -8.52190 -8.46350 -7.76246 -6.10857 -4.20172 1.29273 1.36623 3.25849 3.31277 3.32341 3.48645 3.68342 4.15096 4.38898 4.44095 4.54449 4.85171 4.91023 4.92498 4.96421 5.14218 5.19035 5.20206 5.30097 5.32082 5.37598 5.44777 5.52804 5.54542 5.62690 5.68650 5.80313 5.82418 5.91686 5.92562 5.93733 6.02737 6.05259 6.20211 6.32367 6.39853 6.41069 6.47153 6.54721 6.63059 6.69187 6.74490 6.97415 7.06837 7.22344 7.39999 7.51406 7.64158 7.76538 7.93195 8.20866 8.72827 8.80660 9.20949 9.47672 10.94324 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.002402 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.688815 B =11652.084523 C =12290.786415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.547 6.547 16 C -0.135 4.135 17 C -0.034 4.034 18 H 0.085 0.915 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.087 4.087 24 C -0.056 4.056 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.114 4.114 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.117 0.883 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.657 10.327 18.641 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.053 4.053 18 H 0.103 0.897 19 C -0.204 4.204 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.074 4.074 25 C -0.201 4.201 26 C -0.201 4.201 27 C -0.135 4.135 28 C -0.132 4.132 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.135 0.865 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.175 10.184 17.758 23.818 hybrid contribution 1.399 -0.031 0.286 1.428 sum -10.775 10.153 18.044 23.340 Atomic orbital electron populations 1.21842 0.98356 0.97932 1.01260 1.21927 0.92625 0.99899 1.02154 1.18743 0.94047 0.89140 0.81206 0.93389 1.21212 0.90859 1.38972 1.06212 0.92235 1.24886 0.98531 0.94860 0.95423 1.69887 1.35160 1.37579 1.09356 0.86532 0.84984 0.78288 0.77423 1.20193 1.21151 1.20220 1.46519 1.14809 1.56093 1.18423 1.20340 0.82627 0.79266 0.89153 1.90626 1.51176 1.60122 1.40749 1.21765 0.97398 1.01020 0.97377 1.19861 0.93781 0.96999 0.94629 0.89682 1.21958 0.97850 0.97520 1.03103 1.20005 0.98287 0.93939 0.94981 1.21010 1.00103 0.99864 0.92004 1.20910 1.00247 0.93812 0.98224 1.19792 1.00215 0.94274 0.94414 1.20106 0.95668 0.98769 0.92900 1.21856 0.97202 1.00898 1.00145 1.21855 0.97687 1.02117 0.98472 1.21002 1.00892 0.99534 0.92101 1.21095 0.99787 0.93864 0.98480 0.94144 0.93174 0.96012 0.88400 0.95175 0.92549 0.78098 0.89618 0.89676 0.93294 0.89631 0.93490 0.86126 0.86464 0.90700 0.92446 0.92556 0.92575 0.92560 0.92429 0.92504 0.86454 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.74 2.24 -69.09 -0.15 6.58 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.71 11.29 55.43 0.63 -24.08 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.71 -14.42 5.02 -54.94 -0.28 -14.69 16 14 C 0.50 9.44 6.11 -10.98 -0.07 9.37 16 15 O -0.55 -11.99 11.11 5.56 0.06 -11.92 16 16 C -0.14 -1.90 4.92 -27.88 -0.14 -2.04 16 17 C -0.03 -0.46 2.21 -91.77 -0.20 -0.66 16 18 H 0.08 1.26 7.69 -51.93 -0.40 0.86 16 19 C -0.15 -2.04 8.74 37.16 0.32 -1.71 16 20 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 21 C -0.11 -1.23 8.76 -39.58 -0.35 -1.57 16 22 C -0.11 -1.13 8.71 -39.58 -0.34 -1.47 16 23 C -0.09 -0.83 4.78 -104.63 -0.50 -1.33 16 24 C -0.06 -0.42 3.09 -91.77 -0.28 -0.71 16 25 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 26 C -0.14 -0.99 9.01 37.16 0.33 -0.66 16 27 C -0.12 -1.18 9.67 -39.59 -0.38 -1.57 16 28 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 29 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.05 7.59 -51.93 -0.39 0.66 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.43 5.95 -51.93 -0.31 1.12 16 40 H 0.05 0.59 7.37 -51.93 -0.38 0.20 16 41 H 0.12 1.22 7.16 -52.48 -0.38 0.84 16 42 H 0.12 0.97 7.10 -52.49 -0.37 0.60 16 43 H 0.07 0.52 7.88 -51.93 -0.41 0.12 16 44 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 51 H 0.12 1.26 7.95 -52.48 -0.42 0.84 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -29.16 396.14 -10.09 -39.26 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -8.92 Total: 7.90 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -2.53 Total: -18.02 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.35 Total: -38.77 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.16 -10.09 -39.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183881253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds