Wall clock time and date at job start Fri Apr 10 2020 23:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46846 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47372 * 119.99935 * 9 7 5 12 12 H 1.48500 * 109.47110 * 240.00168 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.47233 * 55.00021 * 17 16 14 19 19 C 1.52999 * 109.46790 * 294.99670 * 17 16 14 20 20 C 1.50697 * 109.46805 * 174.99838 * 17 16 14 21 21 C 1.38241 * 120.00142 * 59.72384 * 20 17 16 22 22 C 1.38239 * 119.99820 * 179.78261 * 21 20 17 23 23 C 1.38230 * 119.99976 * 0.47076 * 22 21 20 24 24 C 1.50696 * 119.99992 * 179.78824 * 23 22 21 25 25 C 1.53002 * 109.46899 * 299.97500 * 24 23 22 26 26 C 1.53001 * 109.47454 * 59.97183 * 24 23 22 27 27 C 1.38239 * 120.00369 * 359.76022 * 23 22 21 28 28 C 1.38231 * 119.99719 * 0.02782 * 27 23 22 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 38 38 H 1.09000 * 109.47286 * 60.00670 * 19 17 16 39 39 H 1.09001 * 109.46993 * 180.02562 * 19 17 16 40 40 H 1.09001 * 109.47320 * 299.99700 * 19 17 16 41 41 H 1.08001 * 119.99876 * 0.02562 * 21 20 17 42 42 H 1.08001 * 119.99407 * 180.24975 * 22 21 20 43 43 H 1.09005 * 109.47621 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47170 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47539 * 299.99596 * 25 24 23 46 46 H 1.08998 * 109.47579 * 59.99842 * 25 24 23 47 47 H 1.09001 * 109.46757 * 60.00357 * 26 24 23 48 48 H 1.09000 * 109.47082 * 180.02562 * 26 24 23 49 49 H 1.09002 * 109.47287 * 300.00305 * 26 24 23 50 50 H 1.07997 * 120.00048 * 180.02562 * 27 23 22 51 51 H 1.07998 * 120.00201 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5989 1.5440 0.1931 11 1 6.4001 1.6155 2.6092 12 1 6.4962 -0.5192 1.4627 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 1 -1.4344 4.5517 -1.6527 19 6 -2.3695 2.7389 -2.3459 20 6 -1.7355 4.6733 -3.7619 21 6 -1.7321 4.0478 -4.9947 22 6 -2.0603 4.7610 -6.1325 23 6 -2.3825 6.1020 -6.0387 24 6 -2.7357 6.8806 -7.2797 25 6 -1.5555 6.8517 -8.2530 26 6 -3.9612 6.2512 -7.9452 27 6 -2.3813 6.7287 -4.8066 28 6 -2.0573 6.0145 -3.6683 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8293 -0.0605 2.9503 35 1 2.2720 2.1232 -1.9977 36 1 0.7278 4.1531 -2.8677 37 1 0.0674 2.6131 -3.4685 38 1 -2.1142 2.1757 -1.4483 39 1 -3.3803 3.1356 -2.2510 40 1 -2.3175 2.0820 -3.2142 41 1 -1.4768 3.0010 -5.0684 42 1 -2.0615 4.2713 -7.0951 43 1 -2.9588 7.9129 -7.0098 44 1 -1.8108 7.4152 -9.1504 45 1 -0.6824 7.3001 -7.7790 46 1 -1.3324 5.8195 -8.5230 47 1 -4.8019 6.2719 -7.2518 48 1 -4.2163 6.8142 -8.8431 49 1 -3.7381 5.2190 -8.2152 50 1 -2.6334 7.7763 -4.7333 51 1 -2.0559 6.5041 -2.7057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183881270.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:09 Heat of formation + Delta-G solvation = -52.173558 kcal Electronic energy + Delta-G solvation = -26516.678042 eV Core-core repulsion = 22993.329001 eV Total energy + Delta-G solvation = -3523.349041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.04518 -39.01515 -36.50123 -35.08331 -33.68331 -32.35143 -30.99497 -30.96120 -29.08310 -27.77153 -27.43471 -26.49257 -23.91016 -23.04898 -22.91467 -21.06260 -20.14551 -19.59129 -19.20873 -17.22509 -16.55149 -15.80823 -15.52788 -15.18858 -14.95657 -14.88420 -14.33980 -14.13555 -13.97697 -13.81633 -13.65121 -13.24153 -13.07952 -12.88376 -12.68279 -12.58466 -12.40476 -12.11975 -11.80246 -11.59163 -11.48828 -11.38532 -11.24191 -11.20065 -10.98006 -10.95863 -10.87086 -10.82239 -10.59513 -10.48652 -10.29501 -10.12824 -9.60425 -9.02145 -8.95716 -8.84708 -8.52339 -8.46974 -7.76310 -6.11447 -4.20493 1.29231 1.36618 3.23605 3.31651 3.34188 3.48570 3.68322 4.15057 4.38681 4.44046 4.54424 4.85133 4.91031 4.92479 4.96428 5.14182 5.18988 5.19894 5.30060 5.32032 5.37588 5.44767 5.52828 5.54479 5.62670 5.68614 5.80339 5.82348 5.91664 5.92562 5.93710 6.02664 6.05247 6.20231 6.32356 6.39838 6.40942 6.47024 6.54703 6.63009 6.69099 6.74436 6.97396 7.06701 7.22247 7.39904 7.51294 7.64345 7.76335 7.93046 8.20561 8.72830 8.80748 9.20897 9.47470 10.93848 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022615 B = 0.002403 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.814625 B =11650.662450 C =12289.280081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.711 5.711 14 C 0.501 3.499 15 O -0.547 6.547 16 C -0.135 4.135 17 C -0.034 4.034 18 H 0.085 0.915 19 C -0.147 4.147 20 C -0.072 4.072 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.087 4.087 24 C -0.056 4.056 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.114 4.114 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.029 0.971 34 H 0.263 0.737 35 H 0.387 0.613 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.055 0.945 49 H 0.056 0.944 50 H 0.117 0.883 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 10.339 -18.671 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.427 6.427 16 C -0.176 4.176 17 C -0.053 4.053 18 H 0.103 0.897 19 C -0.204 4.204 20 C -0.072 4.072 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.074 4.074 25 C -0.201 4.201 26 C -0.201 4.201 27 C -0.135 4.135 28 C -0.132 4.132 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.219 0.781 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.135 0.865 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.169 10.201 -17.797 23.851 hybrid contribution 1.391 -0.043 -0.264 1.416 sum -10.779 10.157 -18.061 23.357 Atomic orbital electron populations 1.21843 0.98350 0.97934 1.01263 1.21923 0.92634 0.99892 1.02154 1.18754 0.94091 0.89146 0.81214 0.93382 1.21287 0.90860 1.38766 1.06191 0.92124 1.24893 0.98547 0.94878 0.95439 1.69906 1.34981 1.37768 1.09323 0.86420 0.84994 0.77748 0.78093 1.19774 1.20907 1.20903 1.46519 1.14815 1.56083 1.18425 1.20341 0.82628 0.79264 0.89155 1.90626 1.51173 1.60110 1.40764 1.21770 0.97396 1.01027 0.97374 1.19860 0.93778 0.97009 0.94624 0.89682 1.21958 0.97847 0.97515 1.03103 1.20007 0.98294 0.93943 0.94965 1.21011 1.00077 0.99898 0.91999 1.20910 1.00211 0.93832 0.98239 1.19792 1.00232 0.94259 0.94412 1.20106 0.95670 0.98771 0.92896 1.21857 0.97682 1.02116 0.98476 1.21856 0.97213 1.00897 1.00136 1.21003 1.00884 0.99542 0.92099 1.21094 0.99808 0.93844 0.98481 0.94141 0.93174 0.96008 0.88406 0.95169 0.92663 0.78092 0.89619 0.89671 0.89622 0.93299 0.93500 0.86128 0.86464 0.90699 0.92559 0.92504 0.92430 0.92568 0.92555 0.92452 0.86453 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.52 37.16 0.32 -2.69 16 2 C -0.13 -3.07 5.45 -26.74 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.70 11.29 55.43 0.63 -24.07 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.71 -14.41 5.02 -54.94 -0.28 -14.69 16 14 C 0.50 9.43 6.11 -10.98 -0.07 9.36 16 15 O -0.55 -11.98 11.10 5.56 0.06 -11.92 16 16 C -0.14 -1.90 4.91 -27.88 -0.14 -2.03 16 17 C -0.03 -0.46 2.21 -91.77 -0.20 -0.66 16 18 H 0.08 1.26 7.69 -51.93 -0.40 0.86 16 19 C -0.15 -2.04 8.75 37.16 0.33 -1.71 16 20 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 21 C -0.11 -1.23 8.76 -39.58 -0.35 -1.57 16 22 C -0.11 -1.13 8.71 -39.58 -0.34 -1.47 16 23 C -0.09 -0.83 4.78 -104.63 -0.50 -1.33 16 24 C -0.06 -0.42 3.09 -91.77 -0.28 -0.71 16 25 C -0.14 -0.99 9.01 37.16 0.33 -0.66 16 26 C -0.14 -0.97 9.01 37.16 0.33 -0.64 16 27 C -0.12 -1.18 9.67 -39.58 -0.38 -1.57 16 28 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 29 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 30 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 38 H 0.09 1.43 5.95 -51.93 -0.31 1.12 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 41 H 0.12 1.22 7.16 -52.49 -0.38 0.84 16 42 H 0.12 0.97 7.10 -52.49 -0.37 0.60 16 43 H 0.07 0.52 7.88 -51.93 -0.41 0.12 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.06 0.40 7.39 -51.93 -0.38 0.01 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.06 0.39 7.39 -51.93 -0.38 0.00 16 50 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 51 H 0.12 1.25 7.95 -52.49 -0.42 0.84 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -29.20 396.14 -10.09 -39.30 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.92 Total: 7.84 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.53 Total: -18.02 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.35 Total: -38.76 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.06 Total: -11.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.20 -10.09 -39.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183881270.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds