Wall clock time and date at job start Fri Apr 10 2020 23:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46843 * 2 1 4 4 H 1.08995 * 109.46633 * 180.41466 * 3 2 1 5 5 C 1.50693 * 109.47273 * 60.41236 * 3 2 1 6 6 H 1.08003 * 119.99840 * 244.61548 * 5 3 2 7 7 C 1.37879 * 119.99988 * 64.61004 * 5 3 2 8 8 N 1.31515 * 119.99877 * 8.25723 * 7 5 3 9 9 Si 1.86801 * 119.99832 * 188.25586 * 7 5 3 10 10 H 1.48499 * 109.47145 * 90.00385 * 9 7 5 11 11 H 1.48502 * 109.47027 * 209.99938 * 9 7 5 12 12 H 1.48492 * 109.47290 * 330.00165 * 9 7 5 13 13 N 1.46898 * 109.47061 * 300.40961 * 3 2 1 14 14 C 1.46904 * 111.00187 * 273.09441 * 13 3 2 15 15 H 1.09000 * 109.47261 * 39.22879 * 14 13 3 16 16 C 1.53002 * 109.46881 * 159.22927 * 14 13 3 17 17 C 1.53000 * 109.47375 * 295.60203 * 16 14 13 18 18 C 1.53178 * 109.54177 * 295.11159 * 17 16 14 19 19 C 1.53100 * 109.15411 * 183.24205 * 18 17 16 20 20 O 1.42903 * 109.49182 * 57.47432 * 19 18 17 21 21 C 1.42907 * 114.09345 * 298.88621 * 20 19 18 22 22 C 1.53097 * 109.41278 * 61.15710 * 21 20 19 23 23 C 1.50698 * 109.46867 * 279.22651 * 14 13 3 24 24 C 1.38237 * 120.00173 * 319.72893 * 23 14 13 25 25 C 1.38236 * 120.00015 * 179.80493 * 24 23 14 26 26 C 1.38235 * 119.99817 * 0.40013 * 25 24 23 27 27 C 1.38235 * 119.99977 * 359.85604 * 26 25 24 28 28 C 1.38231 * 120.00195 * 359.95494 * 27 26 25 29 29 H 1.08996 * 109.47325 * 184.47294 * 1 2 3 30 30 H 1.09000 * 109.47004 * 304.47181 * 1 2 3 31 31 H 1.09000 * 109.47301 * 64.46847 * 1 2 3 32 32 H 1.08992 * 109.47480 * 240.00446 * 2 1 3 33 33 H 1.08995 * 109.47267 * 119.99069 * 2 1 3 34 34 H 0.96997 * 119.99879 * 2.32789 * 8 7 5 35 35 H 1.00898 * 110.99935 * 149.13709 * 13 3 2 36 36 H 1.09000 * 109.46932 * 55.60573 * 16 14 13 37 37 H 1.09001 * 109.46757 * 175.59977 * 16 14 13 38 38 H 1.09000 * 109.54047 * 55.28388 * 17 16 14 39 39 H 1.09005 * 109.52259 * 303.05389 * 18 17 16 40 40 H 1.08999 * 109.52714 * 63.24628 * 18 17 16 41 41 H 1.09005 * 109.40735 * 297.48527 * 19 18 17 42 42 H 1.09008 * 109.48993 * 177.50595 * 19 18 17 43 43 H 1.09001 * 109.48443 * 301.17505 * 21 20 19 44 44 H 1.09003 * 109.49104 * 181.14545 * 21 20 19 45 45 H 1.09005 * 109.52035 * 182.48211 * 22 21 20 46 46 H 1.09000 * 109.57310 * 62.32948 * 22 21 20 47 47 H 1.07997 * 120.00109 * 359.97438 * 24 23 14 48 48 H 1.08001 * 120.00109 * 180.22926 * 25 24 23 49 49 H 1.07998 * 119.99676 * 179.82842 * 26 25 24 50 50 H 1.08003 * 119.99445 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99993 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 -0.0074 5 6 1.5460 2.1501 1.2355 6 1 0.8644 2.9829 1.1447 7 6 1.9641 1.7340 2.4817 8 7 2.9144 0.8312 2.5890 9 14 1.1809 2.4528 4.0177 10 1 0.0100 1.6274 4.4089 11 1 2.1731 2.4594 5.1226 12 1 0.7369 3.8429 3.7429 13 7 1.5422 2.1379 -1.1944 14 6 2.4423 1.9319 -2.3370 15 1 2.8054 0.9041 -2.3328 16 6 1.6837 2.1994 -3.6385 17 6 0.5642 1.1687 -3.7975 18 6 1.1726 -0.2275 -3.9610 19 6 0.0495 -1.2401 -4.2002 20 8 -0.7031 -0.8542 -5.3521 21 6 -1.3344 0.4226 -5.2356 22 6 -0.2668 1.5023 -5.0402 23 6 3.6106 2.8779 -2.2330 24 6 3.4105 4.1801 -1.8145 25 6 4.4828 5.0468 -1.7152 26 6 5.7541 4.6136 -2.0424 27 6 5.9535 3.3130 -2.4660 28 6 4.8817 2.4452 -2.5615 29 1 -0.3634 -1.0245 0.0801 30 1 -0.3633 0.5817 0.8472 31 1 -0.3634 0.4429 -0.9273 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.3445 0.4828 1.7925 35 1 1.4094 3.1213 -1.0114 36 1 1.2542 3.2008 -3.6094 37 1 2.3704 2.1230 -4.4815 38 1 -0.0758 1.1865 -2.9153 39 1 1.8522 -0.2312 -4.8132 40 1 1.7194 -0.4948 -3.0567 41 1 -0.6060 -1.2663 -3.3297 42 1 0.4794 -2.2288 -4.3614 43 1 -2.0081 0.4182 -4.3787 44 1 -1.9015 0.6320 -6.1426 45 1 -0.7485 2.4710 -4.9071 46 1 0.3830 1.5358 -5.9147 47 1 2.4167 4.5196 -1.5624 48 1 4.3270 6.0631 -1.3847 49 1 6.5915 5.2916 -1.9675 50 1 6.9467 2.9747 -2.7220 51 1 5.0376 1.4289 -2.8921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:28 Heat of formation + Delta-G solvation = -48.236833 kcal Electronic energy + Delta-G solvation = -28377.624241 eV Core-core repulsion = 24854.445910 eV Total energy + Delta-G solvation = -3523.178332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -39.74231 -38.94592 -36.78249 -34.92878 -33.06971 -31.27593 -31.00888 -30.67172 -29.58332 -28.46483 -25.58926 -24.18828 -23.61396 -23.35549 -22.33584 -21.99455 -20.32526 -19.72292 -19.01049 -17.19351 -16.57646 -16.04202 -15.90672 -15.17049 -14.94942 -14.65742 -14.50273 -14.15292 -13.98948 -13.78012 -13.55744 -13.44205 -13.11105 -12.78411 -12.64686 -12.46622 -12.28612 -11.97159 -11.93660 -11.34090 -11.25122 -11.17787 -11.09451 -10.90536 -10.81167 -10.65743 -10.57934 -10.18673 -10.14364 -10.10429 -10.10236 -9.88394 -9.64186 -9.39258 -8.64144 -8.54303 -8.35645 -8.29544 -7.41913 -6.35268 -4.05497 1.65257 1.68275 3.42710 3.44274 3.60012 3.94704 4.07050 4.50733 4.76770 4.86165 5.00559 5.08522 5.11060 5.17383 5.21393 5.24645 5.34121 5.37036 5.39262 5.49675 5.60538 5.64763 5.70703 5.76355 5.81292 5.89024 5.91556 5.98448 6.10164 6.14204 6.18426 6.27070 6.28899 6.30925 6.34532 6.39773 6.50092 6.57914 6.72482 6.74732 6.77280 6.89537 6.99081 7.09613 7.24836 7.26370 7.28776 7.50704 7.54262 7.87524 8.09062 8.50351 8.58156 8.87366 9.64638 11.01789 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.005527 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.852577 B = 5064.548645 C = 7255.394776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.207 3.793 4 H -0.006 1.006 5 C -0.592 4.592 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.909 5.909 9 Si 1.064 2.936 10 H -0.288 1.288 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.665 5.665 14 C 0.122 3.878 15 H 0.080 0.920 16 C -0.090 4.090 17 C -0.081 4.081 18 C -0.149 4.149 19 C 0.061 3.939 20 O -0.389 6.389 21 C 0.062 3.938 22 C -0.150 4.150 23 C -0.094 4.094 24 C -0.106 4.106 25 C -0.117 4.117 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.117 4.117 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.017 0.983 33 H 0.057 0.943 34 H 0.270 0.730 35 H 0.333 0.667 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.117 0.883 49 H 0.115 0.885 50 H 0.115 0.885 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 2.669 -14.190 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C 0.099 3.901 4 H 0.012 0.988 5 C -0.631 4.631 6 H 0.069 0.931 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.893 3.107 10 H -0.215 1.215 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.296 5.296 14 C 0.011 3.989 15 H 0.098 0.902 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.186 4.186 19 C -0.015 4.015 20 O -0.308 6.308 21 C -0.015 4.015 22 C -0.188 4.188 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.133 0.867 50 H 0.133 0.867 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.738 1.957 -12.852 13.116 hybrid contribution 0.987 0.861 -1.010 1.654 sum -0.751 2.819 -13.862 14.165 Atomic orbital electron populations 1.21442 0.96637 0.97715 1.01839 1.21489 0.96107 0.98467 0.98195 1.19181 0.92603 0.91097 0.87221 0.98797 1.21941 1.31052 1.18252 0.91853 0.93063 1.25618 0.95444 0.95771 1.01133 1.70756 1.22080 1.28297 1.33393 0.83608 0.75901 0.75511 0.75646 1.21450 1.21289 1.21622 1.60833 1.46193 1.16772 1.05798 1.20713 0.88624 0.96871 0.92742 0.90240 1.21529 0.96626 0.98801 0.95899 1.21111 0.97075 0.93810 0.97953 1.22258 0.98400 0.95679 1.02303 1.22575 0.92890 0.97771 0.88292 1.87875 1.67595 1.35430 1.39892 1.22541 0.94208 0.83270 1.01496 1.22253 0.98502 0.98971 0.99078 1.20894 0.96096 0.95355 0.97285 1.20933 0.99052 0.93386 0.99093 1.21067 0.92936 0.99572 0.99981 1.21033 0.96933 0.96133 1.00841 1.21055 0.98480 0.94028 1.00480 1.21020 0.92552 0.99324 1.00697 0.96577 0.92169 0.93449 0.96445 0.92420 0.91819 0.84685 0.92163 0.92696 0.88859 0.91980 0.90343 0.92971 0.89437 0.93211 0.89533 0.91205 0.91722 0.86176 0.86507 0.86707 0.86672 0.86686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.52 37.16 0.35 -2.10 16 2 C -0.10 -2.31 5.49 -26.73 -0.15 -2.46 16 3 C 0.21 4.78 1.73 -68.86 -0.12 4.66 16 4 H -0.01 -0.15 6.80 -51.93 -0.35 -0.50 16 5 C -0.59 -15.43 7.18 -34.44 -0.25 -15.67 16 6 H 0.05 1.35 7.65 -52.48 -0.40 0.95 16 7 C 0.03 0.69 5.21 -17.82 -0.09 0.60 16 8 N -0.91 -26.47 12.91 55.43 0.72 -25.75 16 9 Si 1.06 24.73 29.91 -169.99 -5.08 19.64 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.67 -12.55 4.67 -102.17 -0.48 -13.03 16 14 C 0.12 1.97 1.92 -68.86 -0.13 1.84 16 15 H 0.08 1.38 5.43 -51.93 -0.28 1.10 16 16 C -0.09 -1.24 4.35 -26.73 -0.12 -1.35 16 17 C -0.08 -1.07 2.21 -90.44 -0.20 -1.27 16 18 C -0.15 -1.95 5.10 -26.59 -0.14 -2.08 16 19 C 0.06 0.78 6.84 37.21 0.25 1.03 16 20 O -0.39 -5.24 10.77 -35.23 -0.38 -5.62 16 21 C 0.06 0.70 6.84 37.21 0.25 0.96 16 22 C -0.15 -1.72 5.43 -26.59 -0.14 -1.86 16 23 C -0.09 -1.57 4.38 -104.62 -0.46 -2.02 16 24 C -0.11 -1.74 9.16 -39.58 -0.36 -2.10 16 25 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 28 C -0.12 -1.84 9.67 -39.58 -0.38 -2.22 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 1.37 7.08 -51.93 -0.37 1.00 16 31 H 0.05 0.91 6.76 -51.93 -0.35 0.56 16 32 H 0.02 0.35 6.67 -51.93 -0.35 0.00 16 33 H 0.06 1.45 6.33 -51.93 -0.33 1.12 16 34 H 0.27 7.90 6.11 -40.82 -0.25 7.66 16 35 H 0.33 6.47 5.95 -39.29 -0.23 6.24 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 1.43 6.64 -51.93 -0.34 1.08 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.13 5.79 -51.93 -0.30 0.83 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.12 1.91 6.52 -52.49 -0.34 1.57 16 48 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 49 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 50 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 51 H 0.12 1.64 8.04 -52.49 -0.42 1.22 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -28.47 386.14 -10.89 -39.36 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.62 Total: 10.20 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: -2.87 Total: -30.63 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.24 Total: -38.78 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.38 Total: -5.62 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.47 -10.89 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.873 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds