Wall clock time and date at job start Fri Apr 10 2020 23:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53011 * 109.46843 * 2 1 4 4 H 1.08995 * 109.46633 * 180.41466 * 3 2 1 5 5 C 1.50693 * 109.47273 * 60.41236 * 3 2 1 6 6 H 1.08003 * 119.99840 * 244.61548 * 5 3 2 7 7 C 1.37879 * 119.99988 * 64.61004 * 5 3 2 8 8 N 1.31515 * 119.99877 * 8.25723 * 7 5 3 9 9 Si 1.86801 * 119.99832 * 188.25586 * 7 5 3 10 10 H 1.48499 * 109.47145 * 90.00385 * 9 7 5 11 11 H 1.48502 * 109.47027 * 209.99938 * 9 7 5 12 12 H 1.48492 * 109.47290 * 330.00165 * 9 7 5 13 13 N 1.46898 * 109.47061 * 300.40961 * 3 2 1 14 14 C 1.46904 * 111.00187 * 273.09441 * 13 3 2 15 15 H 1.09000 * 109.47261 * 39.22879 * 14 13 3 16 16 C 1.53002 * 109.46881 * 159.22927 * 14 13 3 17 17 C 1.53000 * 109.47375 * 295.60203 * 16 14 13 18 18 C 1.53178 * 109.54177 * 295.11159 * 17 16 14 19 19 C 1.53100 * 109.15411 * 183.24205 * 18 17 16 20 20 O 1.42903 * 109.49182 * 57.47432 * 19 18 17 21 21 C 1.42907 * 114.09345 * 298.88621 * 20 19 18 22 22 C 1.53097 * 109.41278 * 61.15710 * 21 20 19 23 23 C 1.50698 * 109.46867 * 279.22651 * 14 13 3 24 24 C 1.38237 * 120.00173 * 319.72893 * 23 14 13 25 25 C 1.38236 * 120.00015 * 179.80493 * 24 23 14 26 26 C 1.38235 * 119.99817 * 0.40013 * 25 24 23 27 27 C 1.38235 * 119.99977 * 359.85604 * 26 25 24 28 28 C 1.38231 * 120.00195 * 359.95494 * 27 26 25 29 29 H 1.08996 * 109.47325 * 184.47294 * 1 2 3 30 30 H 1.09000 * 109.47004 * 304.47181 * 1 2 3 31 31 H 1.09000 * 109.47301 * 64.46847 * 1 2 3 32 32 H 1.08992 * 109.47480 * 240.00446 * 2 1 3 33 33 H 1.08995 * 109.47267 * 119.99069 * 2 1 3 34 34 H 0.96997 * 119.99879 * 2.32789 * 8 7 5 35 35 H 1.00898 * 110.99935 * 149.13709 * 13 3 2 36 36 H 1.09000 * 109.46932 * 55.60573 * 16 14 13 37 37 H 1.09001 * 109.46757 * 175.59977 * 16 14 13 38 38 H 1.09000 * 109.54047 * 55.28388 * 17 16 14 39 39 H 1.09005 * 109.52259 * 303.05389 * 18 17 16 40 40 H 1.08999 * 109.52714 * 63.24628 * 18 17 16 41 41 H 1.09005 * 109.40735 * 297.48527 * 19 18 17 42 42 H 1.09008 * 109.48993 * 177.50595 * 19 18 17 43 43 H 1.09001 * 109.48443 * 301.17505 * 21 20 19 44 44 H 1.09003 * 109.49104 * 181.14545 * 21 20 19 45 45 H 1.09005 * 109.52035 * 182.48211 * 22 21 20 46 46 H 1.09000 * 109.57310 * 62.32948 * 22 21 20 47 47 H 1.07997 * 120.00109 * 359.97438 * 24 23 14 48 48 H 1.08001 * 120.00109 * 180.22926 * 25 24 23 49 49 H 1.07998 * 119.99676 * 179.82842 * 26 25 24 50 50 H 1.08003 * 119.99445 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99993 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1299 1.4426 -0.0074 5 6 1.5460 2.1501 1.2355 6 1 0.8644 2.9829 1.1447 7 6 1.9641 1.7340 2.4817 8 7 2.9144 0.8312 2.5890 9 14 1.1809 2.4528 4.0177 10 1 0.0100 1.6274 4.4089 11 1 2.1731 2.4594 5.1226 12 1 0.7369 3.8429 3.7429 13 7 1.5422 2.1379 -1.1944 14 6 2.4423 1.9319 -2.3370 15 1 2.8054 0.9041 -2.3328 16 6 1.6837 2.1994 -3.6385 17 6 0.5642 1.1687 -3.7975 18 6 1.1726 -0.2275 -3.9610 19 6 0.0495 -1.2401 -4.2002 20 8 -0.7031 -0.8542 -5.3521 21 6 -1.3344 0.4226 -5.2356 22 6 -0.2668 1.5023 -5.0402 23 6 3.6106 2.8779 -2.2330 24 6 3.4105 4.1801 -1.8145 25 6 4.4828 5.0468 -1.7152 26 6 5.7541 4.6136 -2.0424 27 6 5.9535 3.3130 -2.4660 28 6 4.8817 2.4452 -2.5615 29 1 -0.3634 -1.0245 0.0801 30 1 -0.3633 0.5817 0.8472 31 1 -0.3634 0.4429 -0.9273 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.3445 0.4828 1.7925 35 1 1.4094 3.1213 -1.0114 36 1 1.2542 3.2008 -3.6094 37 1 2.3704 2.1230 -4.4815 38 1 -0.0758 1.1865 -2.9153 39 1 1.8522 -0.2312 -4.8132 40 1 1.7194 -0.4948 -3.0567 41 1 -0.6060 -1.2663 -3.3297 42 1 0.4794 -2.2288 -4.3614 43 1 -2.0081 0.4182 -4.3787 44 1 -1.9015 0.6320 -6.1426 45 1 -0.7485 2.4710 -4.9071 46 1 0.3830 1.5358 -5.9147 47 1 2.4167 4.5196 -1.5624 48 1 4.3270 6.0631 -1.3847 49 1 6.5915 5.2916 -1.9675 50 1 6.9467 2.9747 -2.7220 51 1 5.0376 1.4289 -2.8921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:27 Heat of formation + Delta-G solvation = -61.982681 kcal Electronic energy + Delta-G solvation = -28378.220306 eV Core-core repulsion = 24854.445910 eV Total energy + Delta-G solvation = -3523.774396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.93420 -40.01953 -38.27788 -36.37886 -34.47120 -33.11363 -32.00185 -31.84535 -31.02281 -29.69656 -27.34163 -25.54348 -25.37467 -24.41756 -23.51520 -23.12325 -21.80046 -20.93463 -20.50847 -18.96946 -17.93850 -17.05857 -16.90176 -16.53922 -16.14566 -15.90918 -15.69315 -15.61370 -15.48968 -15.37796 -15.07150 -14.76028 -14.30833 -14.18691 -13.90402 -13.85710 -13.70841 -13.20732 -13.12047 -12.99866 -12.67633 -12.64441 -12.40767 -12.23460 -12.16429 -11.99996 -11.97094 -11.80123 -11.70846 -11.67091 -11.47345 -11.15928 -11.02556 -10.54626 -10.41971 -10.33421 -9.83315 -9.58026 -9.05193 -8.52880 -6.22465 0.46090 0.48985 1.53156 1.60067 1.76334 2.58362 2.87863 3.00785 3.26251 3.54945 3.65277 3.90200 3.96521 3.99011 4.09003 4.12475 4.18283 4.24971 4.32412 4.40839 4.49472 4.51165 4.55682 4.60444 4.62790 4.68330 4.72733 4.80347 4.82995 4.86286 4.94274 5.02774 5.07144 5.08627 5.13747 5.15139 5.20618 5.25764 5.27193 5.37036 5.42716 5.55697 5.58814 5.62306 5.63757 5.68209 5.79324 5.97168 6.12125 6.16950 6.30023 6.56386 6.66980 6.89688 7.55710 8.84047 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009069 B = 0.005527 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.852577 B = 5064.548645 C = 7255.394776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C 0.220 3.780 4 H -0.044 1.044 5 C -0.590 4.590 6 H 0.047 0.953 7 C -0.023 4.023 8 N -0.936 5.936 9 Si 1.105 2.895 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.272 1.272 13 N -0.654 5.654 14 C 0.128 3.872 15 H 0.066 0.934 16 C -0.079 4.079 17 C -0.077 4.077 18 C -0.144 4.144 19 C 0.062 3.938 20 O -0.401 6.401 21 C 0.057 3.943 22 C -0.144 4.144 23 C -0.114 4.114 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.126 4.126 28 C -0.135 4.135 29 H 0.033 0.967 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.024 0.976 34 H 0.257 0.743 35 H 0.331 0.669 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.099 0.901 43 H 0.049 0.951 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.117 0.883 48 H 0.137 0.863 49 H 0.144 0.856 50 H 0.141 0.859 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 3.660 -15.526 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.135 4.135 3 C 0.111 3.889 4 H -0.027 1.027 5 C -0.629 4.629 6 H 0.065 0.935 7 C -0.222 4.222 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.197 1.197 13 N -0.284 5.284 14 C 0.017 3.983 15 H 0.084 0.916 16 C -0.117 4.117 17 C -0.096 4.096 18 C -0.182 4.182 19 C -0.014 4.014 20 O -0.320 6.320 21 C -0.019 4.019 22 C -0.181 4.181 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.152 4.152 27 C -0.144 4.144 28 C -0.154 4.154 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.067 0.933 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.135 0.865 48 H 0.155 0.845 49 H 0.162 0.838 50 H 0.159 0.841 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.229 2.957 -14.219 14.693 hybrid contribution 1.192 0.584 -0.664 1.484 sum -1.037 3.541 -14.882 15.333 Atomic orbital electron populations 1.21309 0.95032 0.98581 1.01479 1.21347 0.97329 0.97580 0.97266 1.18888 0.90134 0.91842 0.88082 1.02693 1.22227 1.29945 1.17773 0.92950 0.93468 1.26839 0.95351 0.95669 1.04339 1.70870 1.23744 1.30125 1.32682 0.83070 0.75385 0.75982 0.72644 1.20309 1.21749 1.19723 1.60776 1.46617 1.16179 1.04823 1.20674 0.88701 0.96205 0.92696 0.91621 1.21433 0.96664 0.99102 0.94505 1.21037 0.96700 0.93695 0.98160 1.22190 0.98519 0.95835 1.01634 1.22581 0.92575 0.98204 0.88079 1.87864 1.67722 1.36428 1.40025 1.22708 0.94171 0.82426 1.02615 1.22197 0.98335 0.99576 0.98019 1.20955 0.96531 0.95631 0.98420 1.21060 0.99601 0.93776 1.00092 1.21394 0.92997 1.00396 0.99610 1.21431 0.97522 0.96535 0.99677 1.21420 0.99287 0.94045 0.99622 1.21250 0.92762 1.00123 1.01241 0.94777 0.94498 0.91980 0.94965 0.95692 0.93270 0.84983 0.91881 0.91689 0.90898 0.91432 0.92058 0.93578 0.88322 0.93284 0.87412 0.90058 0.91261 0.86487 0.84504 0.83778 0.84094 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 9.52 71.98 0.69 -3.70 16 2 C -0.10 -4.40 5.49 30.60 0.17 -4.23 16 3 C 0.22 10.44 1.73 44.17 0.08 10.51 16 4 H -0.04 -2.45 6.80 -2.39 -0.02 -2.46 16 5 C -0.59 -31.29 7.18 25.60 0.18 -31.11 16 6 H 0.05 2.50 7.65 -2.91 -0.02 2.48 16 7 C -0.02 -1.27 5.21 84.66 0.44 -0.83 16 8 N -0.94 -56.14 12.91 21.45 0.28 -55.86 16 9 Si 1.11 49.96 29.91 68.60 2.05 52.01 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 13 N -0.65 -25.02 4.67 -477.15 -2.23 -27.25 16 14 C 0.13 4.19 1.92 44.17 0.08 4.28 16 15 H 0.07 2.34 5.43 -2.39 -0.01 2.32 16 16 C -0.08 -2.09 4.35 30.60 0.13 -1.96 16 17 C -0.08 -1.95 2.21 -10.68 -0.02 -1.98 16 18 C -0.14 -3.65 5.10 30.69 0.16 -3.49 16 19 C 0.06 1.51 6.84 72.02 0.49 2.00 16 20 O -0.40 -10.08 10.77 -148.98 -1.60 -11.69 16 21 C 0.06 1.18 6.84 72.01 0.49 1.68 16 22 C -0.14 -2.98 5.43 30.68 0.17 -2.81 16 23 C -0.11 -3.79 4.38 -19.87 -0.09 -3.88 16 24 C -0.13 -4.14 9.16 22.27 0.20 -3.93 16 25 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 26 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 27 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 28 C -0.14 -4.21 9.67 22.27 0.22 -3.99 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.67 7.08 -2.39 -0.02 1.65 16 31 H 0.06 2.34 6.76 -2.39 -0.02 2.33 16 32 H 0.03 1.34 6.67 -2.39 -0.02 1.33 16 33 H 0.02 1.29 6.33 -2.39 -0.02 1.27 16 34 H 0.26 15.72 6.11 -92.71 -0.57 15.16 16 35 H 0.33 13.00 5.95 -89.70 -0.53 12.47 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.16 6.64 -2.39 -0.02 2.15 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.76 5.79 -2.39 -0.01 1.75 16 41 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.10 2.13 8.14 -2.38 -0.02 2.12 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 45 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.12 3.76 6.52 -2.91 -0.02 3.74 16 48 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 49 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 50 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 51 H 0.12 3.48 8.04 -2.91 -0.02 3.46 16 Total: -1.00 -62.18 386.14 3.13 -59.05 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.57 Total: 37.14 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 4.06 Total: -53.40 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -1.95 Total: -83.11 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.60 Total: -11.69 kcal Atomic # 14 Polarization: 49.96 SS G_CDS: 2.05 Total: 52.01 kcal Total: -62.18 3.13 -59.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.929 kcal (2) G-P(sol) polarization free energy of solvation -62.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds