Wall clock time and date at job start Fri Apr 10 2020 23:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54516 * 1 3 3 C 1.53157 * 107.25084 * 2 1 4 4 C 1.52436 * 107.57840 * 241.72882 * 2 1 3 5 5 C 1.52714 * 110.91808 * 189.68862 * 4 2 1 6 6 H 1.08587 * 110.54624 * 299.79834 * 5 4 2 7 7 N 1.46878 * 109.10586 * 180.14921 * 5 4 2 8 8 C 1.38371 * 119.99890 * 85.70914 * 7 5 4 9 9 C 1.39710 * 119.43287 * 359.97438 * 8 7 5 10 10 C 1.36561 * 119.49227 * 180.02562 * 9 8 7 11 11 C 1.41327 * 118.40994 * 359.97438 * 10 9 8 12 12 C 1.41190 * 120.57140 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00135 * 203.63767 * 12 11 10 14 14 C 1.39873 * 120.00075 * 23.63090 * 12 11 10 15 15 N 1.30908 * 119.99707 * 17.63376 * 14 12 11 16 16 Si 1.86799 * 120.00235 * 197.62864 * 14 12 11 17 17 H 1.48494 * 109.46799 * 60.00547 * 16 14 12 18 18 H 1.48503 * 109.47012 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47159 * 300.00168 * 16 14 12 20 20 C 1.40760 * 118.85617 * 0.02562 * 11 10 9 21 21 N 1.31482 * 120.37304 * 359.97438 * 20 11 10 22 22 C 1.52817 * 108.68767 * 61.34398 * 5 4 2 23 23 C 1.52583 * 110.40270 * 297.55913 * 22 5 4 24 24 C 1.53013 * 110.15974 * 288.95266 * 23 22 5 25 25 C 1.54462 * 107.60541 * 172.15456 * 23 22 5 26 26 N 1.46897 * 109.46841 * 59.99832 * 25 23 22 27 27 C 1.51752 * 107.90162 * 119.80681 * 2 1 3 28 28 H 1.09007 * 109.46876 * 300.19564 * 1 2 3 29 29 H 1.08997 * 109.47786 * 60.19424 * 1 2 3 30 30 H 1.08995 * 109.47096 * 180.19906 * 1 2 3 31 31 H 1.09001 * 109.47294 * 177.71881 * 3 2 1 32 32 H 1.08999 * 109.46794 * 297.71681 * 3 2 1 33 33 H 1.08994 * 109.46636 * 57.71331 * 3 2 1 34 34 H 1.09320 * 109.42589 * 69.09942 * 4 2 1 35 35 H 1.09322 * 109.42948 * 310.28344 * 4 2 1 36 36 H 0.96994 * 119.99790 * 265.70270 * 7 5 4 37 37 H 1.07997 * 120.24757 * 0.27898 * 9 8 7 38 38 H 1.07994 * 120.79125 * 179.97438 * 10 9 8 39 39 H 0.96995 * 119.99769 * 179.97438 * 15 14 12 40 40 H 1.08005 * 119.81035 * 179.97438 * 20 11 10 41 41 H 1.09208 * 109.32185 * 58.05570 * 22 5 4 42 42 H 1.09219 * 109.30035 * 177.10788 * 22 5 4 43 43 H 1.08995 * 109.46594 * 59.99941 * 24 23 22 44 44 H 1.08996 * 109.47028 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46396 * 300.00034 * 24 23 22 46 46 H 1.09003 * 109.47249 * 179.97438 * 25 23 22 47 47 H 1.09001 * 109.46973 * 300.00127 * 25 23 22 48 48 H 1.00897 * 111.00178 * 180.02562 * 26 25 23 49 49 H 1.00902 * 111.00144 * 303.95870 * 26 25 23 50 50 H 1.10230 * 108.60769 * 39.48804 * 27 2 1 51 51 H 1.10199 * 108.66040 * 284.51828 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5452 0.0000 0.0000 3 6 1.9994 1.4627 0.0000 4 6 2.0055 -0.6883 -1.2798 5 6 3.5107 -0.9448 -1.2499 6 1 4.0548 -0.0097 -1.1569 7 7 3.9110 -1.6041 -2.4999 8 6 4.2064 -0.8451 -3.6185 9 6 4.1194 0.5474 -3.5460 10 6 4.4102 1.2975 -4.6494 11 6 4.7924 0.6297 -5.8348 12 6 5.1035 1.3604 -7.0022 13 1 5.0209 0.8908 -7.9713 14 6 5.5186 2.6925 -6.9038 15 7 5.9498 3.1608 -5.7599 16 14 5.4579 3.8031 -8.4045 17 1 4.0590 3.8986 -8.8932 18 1 5.9485 5.1563 -8.0389 19 1 6.3186 3.2373 -9.4742 20 6 4.8575 -0.7763 -5.8316 21 7 4.5674 -1.4528 -4.7421 22 6 3.8265 -1.8694 -0.0749 23 6 3.4513 -1.2005 1.2442 24 6 4.4227 -0.0590 1.5517 25 6 3.6070 -2.2539 2.3631 26 7 4.9987 -2.7223 2.4042 27 6 2.0116 -0.7178 1.2530 28 1 -0.3633 0.5169 0.8883 29 1 -0.3634 0.5108 -0.8917 30 1 -0.3633 -1.0276 0.0036 31 1 3.0878 1.5052 0.0409 32 1 1.6506 1.9513 -0.9098 33 1 1.5829 1.9723 0.8687 34 1 1.7647 -0.0568 -2.1391 35 1 1.4799 -1.6405 -1.3900 36 1 3.9684 -2.5714 -2.5411 37 1 3.8285 1.0269 -2.6231 38 1 4.3494 2.3753 -4.6169 39 1 6.2380 4.0844 -5.6916 40 1 5.1475 -1.3025 -6.7292 41 1 3.2638 -2.7988 -0.1850 42 1 4.8939 -2.1010 -0.0746 43 1 4.3798 0.6799 0.7516 44 1 4.1449 0.4102 2.4954 45 1 5.4356 -0.4545 1.6272 46 1 3.3460 -1.8065 3.3222 47 1 2.9457 -3.0969 2.1630 48 1 5.1265 -3.4131 3.1285 49 1 5.2857 -3.0827 1.5065 50 1 1.3525 -1.5838 1.4282 51 1 1.8709 -0.0476 2.1164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169138602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:10 Heat of formation + Delta-G solvation = 6.754015 kcal Electronic energy + Delta-G solvation = -27831.023510 eV Core-core repulsion = 24342.522512 eV Total energy + Delta-G solvation = -3488.500998 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.26004 -38.33826 -36.00439 -35.13968 -33.61509 -31.95447 -30.63527 -30.12783 -28.29672 -27.72324 -26.61136 -26.17240 -24.73294 -24.56079 -22.30719 -21.48771 -20.22724 -19.49051 -17.98244 -17.21940 -16.46766 -16.25176 -15.44395 -15.07265 -14.98908 -14.86898 -14.46132 -14.05849 -13.91816 -13.66690 -13.57461 -13.22991 -13.12838 -12.70807 -12.59271 -12.24072 -12.07836 -11.99826 -11.81077 -11.71357 -11.53963 -11.49985 -11.26881 -11.15297 -11.02491 -10.91267 -10.81419 -10.63148 -10.53453 -10.30087 -10.14259 -9.91932 -9.70695 -9.32943 -8.83231 -8.65803 -8.18289 -7.95513 -6.78663 -6.55102 -4.13922 2.81248 3.03755 3.10372 3.13683 3.34431 3.98410 4.06419 4.29974 4.59397 4.67393 4.75867 4.78924 4.96758 5.07319 5.14670 5.25448 5.37112 5.48777 5.51609 5.56544 5.61092 5.63156 5.71091 5.74625 5.80081 5.82737 5.89713 6.00037 6.03812 6.07351 6.07849 6.15371 6.18786 6.26851 6.33717 6.39765 6.51632 6.57324 6.57734 6.67046 6.71438 6.92360 6.95470 7.21949 7.23916 7.38158 7.49971 7.82023 7.96462 8.33965 8.48964 8.72491 8.89192 8.98401 9.78335 10.27459 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.003213 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.824488 B = 8712.880051 C = 9131.001856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.052 4.052 3 C -0.147 4.147 4 C -0.121 4.121 5 C 0.174 3.826 6 H 0.079 0.921 7 N -0.742 5.742 8 C 0.282 3.718 9 C -0.203 4.203 10 C -0.094 4.094 11 C 0.029 3.971 12 C -0.459 4.459 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.806 5.806 16 Si 0.907 3.093 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.266 1.266 20 C 0.009 3.991 21 N -0.525 5.525 22 C -0.115 4.115 23 C -0.045 4.045 24 C -0.137 4.137 25 C 0.068 3.932 26 N -0.849 5.849 27 C -0.093 4.093 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.385 0.615 37 H 0.098 0.902 38 H 0.126 0.874 39 H 0.279 0.721 40 H 0.125 0.875 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.023 0.977 48 H 0.337 0.663 49 H 0.342 0.658 50 H 0.054 0.946 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 -5.247 15.833 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.067 3.933 6 H 0.097 0.903 7 N -0.380 5.380 8 C 0.050 3.950 9 C -0.227 4.227 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.490 4.490 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.433 5.433 16 Si 0.732 3.268 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.191 1.191 20 C -0.148 4.148 21 N -0.240 5.240 22 C -0.153 4.153 23 C -0.046 4.046 24 C -0.194 4.194 25 C -0.063 4.063 26 N -0.380 5.380 27 C -0.131 4.131 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.218 0.782 37 H 0.116 0.884 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.041 0.959 48 H 0.149 0.851 49 H 0.156 0.844 50 H 0.073 0.927 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.707 -5.021 16.166 18.209 hybrid contribution -0.471 0.198 -0.883 1.021 sum -7.178 -4.823 15.283 17.560 Atomic orbital electron populations 1.22301 0.95083 1.01290 1.01502 1.20309 0.94977 0.95488 0.94508 1.22095 1.01998 0.94836 1.01506 1.22034 0.96950 1.00554 0.96545 1.20477 0.93669 0.96149 0.82998 0.90336 1.43837 1.78896 1.06893 1.08329 1.17767 1.02490 0.87783 0.86968 1.20838 1.09896 0.92671 0.99283 1.21307 0.98211 1.00003 0.92526 1.18334 0.92973 0.92244 0.94035 1.19282 1.40238 0.95617 0.93870 0.90560 1.25834 0.92555 0.98645 0.97113 1.69818 1.30844 1.16425 1.26170 0.86394 0.79631 0.78798 0.82012 1.19009 1.20501 1.19118 1.22164 1.06891 0.91441 0.94337 1.66535 1.16734 1.41491 0.99255 1.21766 1.01587 0.98382 0.93567 1.20351 0.95039 0.95504 0.93700 1.21930 0.99690 0.97164 1.00650 1.22251 0.88594 0.96463 0.98979 1.58742 1.22425 1.46036 1.10758 1.21315 0.94700 0.99840 0.97260 0.93052 0.92586 0.93084 0.91882 0.92467 0.93067 0.91366 0.92431 0.78173 0.88415 0.85595 0.91040 0.85751 0.92354 0.91185 0.92466 0.93289 0.91266 0.91322 0.95898 0.85100 0.84377 0.92716 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.06 37.95 0.31 -1.15 16 2 C -0.05 -0.57 0.71 -154.55 -0.11 -0.68 16 3 C -0.15 -1.69 8.01 37.24 0.30 -1.39 16 4 C -0.12 -1.65 4.01 -27.17 -0.11 -1.76 16 5 C 0.17 2.52 1.93 -67.97 -0.13 2.39 16 6 H 0.08 1.28 4.41 -52.16 -0.23 1.05 16 7 N -0.74 -13.33 5.21 -54.00 -0.28 -13.61 16 8 C 0.28 6.41 7.62 -155.12 -1.18 5.23 16 9 C -0.20 -4.72 8.74 -39.64 -0.35 -5.07 16 10 C -0.09 -2.42 8.74 -39.01 -0.34 -2.77 16 11 C 0.03 0.78 5.59 -106.65 -0.60 0.19 16 12 C -0.46 -12.19 9.07 -37.85 -0.34 -12.54 16 13 H 0.08 1.94 7.90 -52.48 -0.41 1.52 16 14 C 0.07 1.88 5.17 -17.33 -0.09 1.79 16 15 N -0.81 -20.89 10.92 55.54 0.61 -20.28 16 16 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 C 0.01 0.24 10.97 -16.75 -0.18 0.06 16 21 N -0.52 -12.94 10.37 -11.78 -0.12 -13.06 16 22 C -0.11 -1.33 3.43 -27.04 -0.09 -1.42 16 23 C -0.04 -0.45 0.56 -154.54 -0.09 -0.54 16 24 C -0.14 -1.51 7.88 37.16 0.29 -1.21 16 25 C 0.07 0.60 5.44 -3.06 -0.02 0.58 16 26 N -0.85 -7.28 8.58 -9.68 -0.08 -7.37 16 27 C -0.09 -0.91 3.47 -27.95 -0.10 -1.00 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.49 8.05 -51.93 -0.42 0.07 16 31 H 0.06 0.76 4.69 -51.93 -0.24 0.52 16 32 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.10 7.63 -51.75 -0.39 0.70 16 35 H 0.06 0.78 8.10 -51.75 -0.42 0.36 16 36 H 0.39 6.57 8.70 -40.82 -0.36 6.21 16 37 H 0.10 2.04 6.07 -52.49 -0.32 1.72 16 38 H 0.13 3.34 6.19 -52.49 -0.32 3.01 16 39 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 40 H 0.12 2.98 8.06 -52.48 -0.42 2.55 16 41 H 0.06 0.65 8.12 -51.81 -0.42 0.23 16 42 H 0.07 0.85 6.82 -51.81 -0.35 0.50 16 43 H 0.06 0.68 4.49 -51.93 -0.23 0.45 16 44 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 45 H 0.07 0.82 7.33 -51.93 -0.38 0.44 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.02 0.20 8.08 -51.93 -0.42 -0.22 16 48 H 0.34 2.31 9.08 -39.29 -0.36 1.95 16 49 H 0.34 2.98 7.07 -39.29 -0.28 2.70 16 50 H 0.05 0.51 7.60 -51.23 -0.39 0.12 16 51 H 0.06 0.54 7.96 -51.24 -0.41 0.14 16 LS Contribution 378.82 15.07 5.71 5.71 Total: -1.00 -27.91 378.82 -10.48 -38.38 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -8.45 Total: 15.73 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -2.83 Total: -19.30 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.12 Total: -54.33 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.91 -10.48 -38.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169138602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.138 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds