Wall clock time and date at job start Fri Apr 10 2020 23:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54516 * 1 3 3 C 1.53157 * 107.25084 * 2 1 4 4 C 1.52436 * 107.57840 * 241.72882 * 2 1 3 5 5 C 1.52714 * 110.91808 * 189.68862 * 4 2 1 6 6 H 1.08587 * 110.54624 * 299.79834 * 5 4 2 7 7 N 1.46878 * 109.10586 * 180.14921 * 5 4 2 8 8 C 1.38371 * 119.99890 * 85.70914 * 7 5 4 9 9 C 1.39710 * 119.43287 * 359.97438 * 8 7 5 10 10 C 1.36561 * 119.49227 * 180.02562 * 9 8 7 11 11 C 1.41327 * 118.40994 * 359.97438 * 10 9 8 12 12 C 1.41190 * 120.57140 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00135 * 203.63767 * 12 11 10 14 14 C 1.39873 * 120.00075 * 23.63090 * 12 11 10 15 15 N 1.30908 * 119.99707 * 17.63376 * 14 12 11 16 16 Si 1.86799 * 120.00235 * 197.62864 * 14 12 11 17 17 H 1.48494 * 109.46799 * 60.00547 * 16 14 12 18 18 H 1.48503 * 109.47012 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47159 * 300.00168 * 16 14 12 20 20 C 1.40760 * 118.85617 * 0.02562 * 11 10 9 21 21 N 1.31482 * 120.37304 * 359.97438 * 20 11 10 22 22 C 1.52817 * 108.68767 * 61.34398 * 5 4 2 23 23 C 1.52583 * 110.40270 * 297.55913 * 22 5 4 24 24 C 1.53013 * 110.15974 * 288.95266 * 23 22 5 25 25 C 1.54462 * 107.60541 * 172.15456 * 23 22 5 26 26 N 1.46897 * 109.46841 * 59.99832 * 25 23 22 27 27 C 1.51752 * 107.90162 * 119.80681 * 2 1 3 28 28 H 1.09007 * 109.46876 * 300.19564 * 1 2 3 29 29 H 1.08997 * 109.47786 * 60.19424 * 1 2 3 30 30 H 1.08995 * 109.47096 * 180.19906 * 1 2 3 31 31 H 1.09001 * 109.47294 * 177.71881 * 3 2 1 32 32 H 1.08999 * 109.46794 * 297.71681 * 3 2 1 33 33 H 1.08994 * 109.46636 * 57.71331 * 3 2 1 34 34 H 1.09320 * 109.42589 * 69.09942 * 4 2 1 35 35 H 1.09322 * 109.42948 * 310.28344 * 4 2 1 36 36 H 0.96994 * 119.99790 * 265.70270 * 7 5 4 37 37 H 1.07997 * 120.24757 * 0.27898 * 9 8 7 38 38 H 1.07994 * 120.79125 * 179.97438 * 10 9 8 39 39 H 0.96995 * 119.99769 * 179.97438 * 15 14 12 40 40 H 1.08005 * 119.81035 * 179.97438 * 20 11 10 41 41 H 1.09208 * 109.32185 * 58.05570 * 22 5 4 42 42 H 1.09219 * 109.30035 * 177.10788 * 22 5 4 43 43 H 1.08995 * 109.46594 * 59.99941 * 24 23 22 44 44 H 1.08996 * 109.47028 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.46396 * 300.00034 * 24 23 22 46 46 H 1.09003 * 109.47249 * 179.97438 * 25 23 22 47 47 H 1.09001 * 109.46973 * 300.00127 * 25 23 22 48 48 H 1.00897 * 111.00178 * 180.02562 * 26 25 23 49 49 H 1.00902 * 111.00144 * 303.95870 * 26 25 23 50 50 H 1.10230 * 108.60769 * 39.48804 * 27 2 1 51 51 H 1.10199 * 108.66040 * 284.51828 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5452 0.0000 0.0000 3 6 1.9994 1.4627 0.0000 4 6 2.0055 -0.6883 -1.2798 5 6 3.5107 -0.9448 -1.2499 6 1 4.0548 -0.0097 -1.1569 7 7 3.9110 -1.6041 -2.4999 8 6 4.2064 -0.8451 -3.6185 9 6 4.1194 0.5474 -3.5460 10 6 4.4102 1.2975 -4.6494 11 6 4.7924 0.6297 -5.8348 12 6 5.1035 1.3604 -7.0022 13 1 5.0209 0.8908 -7.9713 14 6 5.5186 2.6925 -6.9038 15 7 5.9498 3.1608 -5.7599 16 14 5.4579 3.8031 -8.4045 17 1 4.0590 3.8986 -8.8932 18 1 5.9485 5.1563 -8.0389 19 1 6.3186 3.2373 -9.4742 20 6 4.8575 -0.7763 -5.8316 21 7 4.5674 -1.4528 -4.7421 22 6 3.8265 -1.8694 -0.0749 23 6 3.4513 -1.2005 1.2442 24 6 4.4227 -0.0590 1.5517 25 6 3.6070 -2.2539 2.3631 26 7 4.9987 -2.7223 2.4042 27 6 2.0116 -0.7178 1.2530 28 1 -0.3633 0.5169 0.8883 29 1 -0.3634 0.5108 -0.8917 30 1 -0.3633 -1.0276 0.0036 31 1 3.0878 1.5052 0.0409 32 1 1.6506 1.9513 -0.9098 33 1 1.5829 1.9723 0.8687 34 1 1.7647 -0.0568 -2.1391 35 1 1.4799 -1.6405 -1.3900 36 1 3.9684 -2.5714 -2.5411 37 1 3.8285 1.0269 -2.6231 38 1 4.3494 2.3753 -4.6169 39 1 6.2380 4.0844 -5.6916 40 1 5.1475 -1.3025 -6.7292 41 1 3.2638 -2.7988 -0.1850 42 1 4.8939 -2.1010 -0.0746 43 1 4.3798 0.6799 0.7516 44 1 4.1449 0.4102 2.4954 45 1 5.4356 -0.4545 1.6272 46 1 3.3460 -1.8065 3.3222 47 1 2.9457 -3.0969 2.1630 48 1 5.1265 -3.4131 3.1285 49 1 5.2857 -3.0827 1.5065 50 1 1.3525 -1.5838 1.4282 51 1 1.8709 -0.0476 2.1164 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169138602.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:09 Heat of formation + Delta-G solvation = -8.922445 kcal Electronic energy + Delta-G solvation = -27831.703293 eV Core-core repulsion = 24342.522512 eV Total energy + Delta-G solvation = -3489.180781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31677 -40.11843 -36.98712 -36.54604 -35.37982 -32.83370 -32.51804 -31.67266 -29.95069 -28.60992 -27.44042 -27.20076 -26.52107 -25.34758 -24.01224 -23.19559 -21.80760 -20.36565 -19.18221 -19.05096 -17.89939 -17.46826 -16.87811 -16.55085 -16.02151 -15.99208 -15.54362 -15.41686 -15.15541 -14.92839 -14.60065 -14.43144 -14.39226 -14.27515 -13.92317 -13.63346 -13.46156 -13.18638 -13.07081 -12.95680 -12.87341 -12.76859 -12.59331 -12.45683 -12.28956 -12.17913 -11.91199 -11.80442 -11.63379 -11.56192 -11.26112 -11.19451 -11.02320 -10.86209 -10.34997 -10.14659 -9.91115 -9.47063 -8.66075 -8.38009 -6.11645 0.90663 1.13962 1.40979 1.51760 1.59109 2.24728 2.62583 2.82791 3.52817 3.73492 3.79085 3.84195 3.88949 4.07038 4.17244 4.18600 4.25542 4.32313 4.45132 4.52489 4.57373 4.66898 4.69568 4.75443 4.80349 4.82047 4.86728 4.89882 4.95109 4.98442 5.00815 5.08738 5.14187 5.14948 5.16461 5.24107 5.28735 5.33163 5.42255 5.44401 5.46711 5.54584 5.57839 5.64891 5.71065 5.90300 5.99264 6.32060 6.50395 6.65082 6.66816 6.85145 6.93670 7.18540 7.86964 8.40016 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.018097 B = 0.003213 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.824488 B = 8712.880051 C = 9131.001856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.148 4.148 4 C -0.113 4.113 5 C 0.172 3.828 6 H 0.061 0.939 7 N -0.732 5.732 8 C 0.291 3.709 9 C -0.204 4.204 10 C -0.108 4.108 11 C -0.001 4.001 12 C -0.494 4.494 13 H 0.077 0.923 14 C 0.034 3.966 15 N -0.836 5.836 16 Si 0.981 3.019 17 H -0.262 1.262 18 H -0.269 1.269 19 H -0.260 1.260 20 C -0.004 4.004 21 N -0.538 5.538 22 C -0.105 4.105 23 C -0.040 4.040 24 C -0.135 4.135 25 C 0.074 3.926 26 N -0.858 5.858 27 C -0.092 4.092 28 H 0.067 0.933 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.286 0.714 40 H 0.133 0.867 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.032 0.968 48 H 0.348 0.652 49 H 0.341 0.659 50 H 0.069 0.931 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.962 -5.667 17.675 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C -0.205 4.205 4 C -0.153 4.153 5 C 0.067 3.933 6 H 0.079 0.921 7 N -0.369 5.369 8 C 0.056 3.944 9 C -0.228 4.228 10 C -0.135 4.135 11 C -0.006 4.006 12 C -0.525 4.525 13 H 0.095 0.905 14 C -0.179 4.179 15 N -0.464 5.464 16 Si 0.802 3.198 17 H -0.187 1.187 18 H -0.194 1.194 19 H -0.185 1.185 20 C -0.161 4.161 21 N -0.254 5.254 22 C -0.143 4.143 23 C -0.041 4.041 24 C -0.192 4.192 25 C -0.057 4.057 26 N -0.389 5.389 27 C -0.129 4.129 28 H 0.086 0.914 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.227 0.773 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.050 0.950 48 H 0.161 0.839 49 H 0.155 0.845 50 H 0.087 0.913 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.665 -5.473 18.051 20.361 hybrid contribution -0.183 0.261 -1.318 1.355 sum -7.848 -5.212 16.734 19.204 Atomic orbital electron populations 1.22273 0.93980 1.01899 1.01765 1.20269 0.95842 0.94895 0.93813 1.22104 1.01451 0.95418 1.01523 1.21934 0.95972 1.00338 0.97023 1.20668 0.94151 0.95974 0.82550 0.92146 1.44004 1.77737 1.07162 1.07994 1.18089 1.00480 0.88160 0.87639 1.20994 1.09384 0.93111 0.99328 1.21315 0.99157 0.99669 0.93375 1.18616 0.94206 0.93000 0.94765 1.19533 1.42021 0.97060 0.93864 0.90509 1.26677 0.91451 0.99474 1.00298 1.69873 1.31197 1.17124 1.28182 0.85263 0.79681 0.76846 0.77961 1.18671 1.19390 1.18475 1.22340 1.07281 0.91337 0.95150 1.66623 1.17710 1.41479 0.99632 1.21692 1.01568 0.98144 0.92934 1.20305 0.95074 0.95532 0.93195 1.21895 0.99469 0.97181 1.00639 1.22181 0.88856 0.96185 0.98503 1.58733 1.22431 1.46666 1.11086 1.21282 0.94438 1.00563 0.96664 0.91382 0.93782 0.92312 0.92823 0.94136 0.91215 0.94464 0.92046 0.77326 0.86551 0.86817 0.90352 0.84942 0.91148 0.91631 0.93959 0.92225 0.92325 0.90548 0.95006 0.83908 0.84540 0.91275 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.06 72.50 0.58 -1.96 16 2 C -0.05 -0.96 0.71 -52.21 -0.04 -1.00 16 3 C -0.15 -3.26 8.01 72.03 0.58 -2.68 16 4 C -0.11 -2.99 4.01 30.31 0.12 -2.87 16 5 C 0.17 4.87 1.93 44.76 0.09 4.96 16 6 H 0.06 1.97 4.41 -2.60 -0.01 1.96 16 7 N -0.73 -25.99 5.21 -324.76 -1.69 -27.68 16 8 C 0.29 13.37 7.62 133.31 1.02 14.39 16 9 C -0.20 -9.76 8.74 22.23 0.19 -9.56 16 10 C -0.11 -5.82 8.74 22.64 0.20 -5.63 16 11 C 0.00 -0.04 5.59 -21.18 -0.12 -0.16 16 12 C -0.49 -27.11 9.07 23.39 0.21 -26.89 16 13 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 14 C 0.03 1.75 5.17 85.23 0.44 2.19 16 15 N -0.84 -44.39 10.92 21.82 0.24 -44.16 16 16 Si 0.98 38.90 29.59 68.60 2.03 40.93 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 20 C 0.00 -0.23 10.97 85.36 0.94 0.71 16 21 N -0.54 -26.95 10.37 -191.19 -1.98 -28.94 16 22 C -0.11 -2.24 3.43 30.39 0.10 -2.14 16 23 C -0.04 -0.70 0.56 -52.20 -0.03 -0.73 16 24 C -0.13 -2.74 7.88 71.99 0.57 -2.17 16 25 C 0.07 1.06 5.44 86.80 0.47 1.53 16 26 N -0.86 -12.66 8.58 -184.55 -1.58 -14.25 16 27 C -0.09 -1.49 3.47 29.80 0.10 -1.39 16 28 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.97 8.05 -2.39 -0.02 0.95 16 31 H 0.05 1.28 4.69 -2.39 -0.01 1.27 16 32 H 0.04 1.01 8.09 -2.39 -0.02 0.99 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.21 7.63 -2.22 -0.02 1.19 16 35 H 0.06 1.57 8.10 -2.22 -0.02 1.55 16 36 H 0.39 12.98 8.70 -92.71 -0.81 12.18 16 37 H 0.12 5.00 6.07 -2.91 -0.02 4.99 16 38 H 0.11 6.31 6.19 -2.91 -0.02 6.29 16 39 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 40 H 0.13 6.56 8.06 -2.91 -0.02 6.53 16 41 H 0.07 1.36 8.12 -2.28 -0.02 1.35 16 42 H 0.07 1.49 6.82 -2.27 -0.02 1.47 16 43 H 0.04 0.98 4.49 -2.39 -0.01 0.97 16 44 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 45 H 0.06 1.32 7.33 -2.39 -0.02 1.30 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.03 0.42 8.08 -2.39 -0.02 0.40 16 48 H 0.35 3.89 9.08 -89.70 -0.81 3.08 16 49 H 0.34 5.23 7.07 -89.69 -0.63 4.60 16 50 H 0.07 0.99 7.60 -1.73 -0.01 0.97 16 51 H 0.07 1.06 7.96 -1.74 -0.01 1.04 16 Total: -1.00 -61.55 378.82 1.15 -60.40 By element: Atomic # 1 Polarization: 48.39 SS G_CDS: -1.29 Total: 47.10 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 5.43 Total: -33.41 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -5.02 Total: -115.02 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.55 1.15 -60.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169138602.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.475 kcal (2) G-P(sol) polarization free energy of solvation -61.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds