Wall clock time and date at job start Fri Apr 10 2020 23:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54488 * 1 3 3 C 1.53132 * 107.29496 * 2 1 4 4 C 1.52460 * 107.61907 * 241.65901 * 2 1 3 5 5 C 1.52697 * 110.79831 * 189.09544 * 4 2 1 6 6 H 1.08660 * 110.50578 * 299.97725 * 5 4 2 7 7 N 1.46904 * 109.08228 * 180.45503 * 5 4 2 8 8 C 1.32212 * 120.00197 * 127.07481 * 7 5 4 9 9 C 1.46919 * 120.83108 * 354.65187 * 8 7 5 10 10 C 1.34377 * 119.36763 * 179.97438 * 9 8 7 11 11 N 1.36424 * 121.21883 * 359.97438 * 10 9 8 12 12 H 0.97008 * 119.08649 * 179.97438 * 11 10 9 13 13 C 1.37760 * 121.82399 * 0.02562 * 11 10 9 14 14 C 1.40187 * 119.74424 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99913 * 201.14847 * 14 13 11 16 16 C 1.40343 * 119.99992 * 21.14817 * 14 13 11 17 17 N 1.30591 * 120.00151 * 18.28963 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 198.29230 * 16 14 13 19 19 H 1.48498 * 109.47390 * 60.00253 * 18 16 14 20 20 H 1.48505 * 109.47056 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47218 * 300.00060 * 18 16 14 22 22 C 1.39065 * 120.51264 * 0.02562 * 13 11 10 23 23 C 1.52695 * 108.85605 * 61.52291 * 5 4 2 24 24 C 1.52453 * 110.77978 * 298.43001 * 23 5 4 25 25 C 1.53141 * 110.00755 * 287.58780 * 24 23 5 26 26 C 1.54488 * 107.62531 * 170.98954 * 24 23 5 27 27 N 1.46899 * 109.47183 * 59.99688 * 26 24 23 28 28 C 1.51740 * 107.95060 * 119.83673 * 2 1 3 29 29 H 1.08999 * 109.47168 * 300.16148 * 1 2 3 30 30 H 1.08995 * 109.47280 * 60.16812 * 1 2 3 31 31 H 1.09009 * 109.46829 * 180.16597 * 1 2 3 32 32 H 1.09005 * 109.47014 * 177.78659 * 3 2 1 33 33 H 1.08995 * 109.47336 * 297.78932 * 3 2 1 34 34 H 1.08999 * 109.47189 * 57.79371 * 3 2 1 35 35 H 1.09315 * 109.41528 * 68.55867 * 4 2 1 36 36 H 1.09301 * 109.43949 * 309.68543 * 4 2 1 37 37 H 1.07997 * 120.31602 * 359.97438 * 9 8 7 38 38 H 1.08000 * 119.39053 * 180.02562 * 10 9 8 39 39 H 0.97001 * 120.00234 * 179.97438 * 17 16 14 40 40 H 1.08008 * 120.62918 * 180.27359 * 22 13 11 41 41 H 1.09296 * 109.29514 * 59.09599 * 23 5 4 42 42 H 1.09313 * 109.26883 * 177.80578 * 23 5 4 43 43 H 1.08997 * 109.46914 * 60.00041 * 25 24 23 44 44 H 1.09002 * 109.46896 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.46692 * 299.99829 * 25 24 23 46 46 H 1.08996 * 109.47314 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46646 * 300.00000 * 26 24 23 48 48 H 1.00902 * 110.99241 * 56.05438 * 27 26 24 49 49 H 1.00893 * 110.99952 * 180.02562 * 27 26 24 50 50 H 1.10259 * 108.55979 * 39.42364 * 28 2 1 51 51 H 1.10242 * 108.62621 * 284.61454 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5449 0.0000 0.0000 3 6 2.0001 1.4621 0.0000 4 6 2.0064 -0.6898 -1.2789 5 6 3.5139 -0.9312 -1.2511 6 1 4.0485 0.0104 -1.1605 7 7 3.9186 -1.5858 -2.5024 8 6 4.8940 -1.0718 -3.2320 9 6 5.5067 0.2140 -2.8715 10 6 6.4966 0.7090 -3.6336 11 7 6.9432 0.0395 -4.7351 12 1 7.6593 0.4256 -5.2635 13 6 6.4046 -1.1691 -5.1186 14 6 6.8973 -1.8198 -6.2583 15 1 6.2922 -2.5590 -6.7621 16 6 8.1770 -1.5107 -6.7447 17 7 9.0412 -0.9087 -5.9725 18 14 8.6441 -1.9604 -8.4965 19 1 7.7261 -1.2790 -9.4441 20 1 10.0397 -1.5284 -8.7631 21 1 8.5379 -3.4308 -8.6753 22 6 5.3759 -1.7486 -4.3838 23 6 3.8450 -1.8498 -0.0772 24 6 3.4511 -1.2012 1.2450 25 6 4.4176 -0.0609 1.5777 26 6 3.6007 -2.2681 2.3523 27 7 4.9947 -2.7286 2.4034 28 6 2.0125 -0.7182 1.2522 29 1 -0.3633 0.5163 0.8885 30 1 -0.3633 0.5112 -0.8914 31 1 -0.3633 -1.0278 0.0030 32 1 3.0887 1.5037 0.0397 33 1 1.6507 1.9514 -0.9091 34 1 1.5852 1.9718 0.8695 35 1 1.7572 -0.0638 -2.1397 36 1 1.4892 -1.6471 -1.3829 37 1 5.1647 0.7561 -2.0023 38 1 6.9475 1.6540 -3.3686 39 1 9.9258 -0.6954 -6.3085 40 1 4.9553 -2.6982 -4.6802 41 1 3.3064 -2.7937 -0.1941 42 1 4.9180 -2.0588 -0.0741 43 1 4.3822 0.6879 0.7865 44 1 4.1279 0.3966 2.5237 45 1 5.4304 -0.4554 1.6596 46 1 3.3252 -1.8349 3.3138 47 1 2.9469 -3.1125 2.1339 48 1 5.6265 -1.9539 2.5406 49 1 5.1185 -3.4278 3.1202 50 1 1.3526 -1.5839 1.4274 51 1 1.8703 -0.0484 2.1162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169150674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:52 Heat of formation + Delta-G solvation = 12.159712 kcal Electronic energy + Delta-G solvation = -27651.215871 eV Core-core repulsion = 24162.949282 eV Total energy + Delta-G solvation = -3488.266590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.73210 -38.41994 -35.76372 -34.77060 -33.56612 -31.76703 -30.72227 -30.32598 -27.64989 -27.39682 -26.50349 -25.83790 -25.71271 -24.33117 -21.94162 -21.29633 -19.56690 -19.21983 -17.96548 -17.43937 -16.55615 -16.21941 -15.36870 -14.98681 -14.80836 -14.66218 -14.33842 -14.00450 -13.81124 -13.58283 -13.45208 -12.93246 -12.88415 -12.73106 -12.63458 -12.36193 -12.04015 -11.88656 -11.63352 -11.53680 -11.47021 -11.39012 -11.09654 -10.99167 -10.90431 -10.68534 -10.63348 -10.43752 -10.27767 -10.24636 -9.89400 -9.85671 -9.66623 -9.48653 -9.04355 -8.52432 -8.18110 -7.33178 -7.24191 -5.86765 -4.69720 2.65670 2.83670 2.90005 2.93236 3.23523 3.67720 4.34808 4.56477 4.69387 4.79825 4.94878 4.99856 5.20350 5.25383 5.36748 5.46399 5.53116 5.64159 5.66817 5.72246 5.77248 5.84014 5.87663 5.92504 5.95113 5.97960 6.05705 6.11762 6.18242 6.23698 6.33633 6.36202 6.48737 6.52598 6.57408 6.61794 6.75698 6.78257 6.80744 6.86667 6.92162 6.96885 7.21347 7.22550 7.26326 7.48646 7.50095 7.75982 7.83837 8.06441 8.33713 8.38844 8.88859 9.01492 9.74732 9.88557 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.003072 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.025425 B = 9111.816089 C = 9624.504785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.142 4.142 4 C -0.088 4.088 5 C 0.088 3.912 6 H 0.036 0.964 7 N -0.662 5.662 8 C 0.283 3.717 9 C -0.299 4.299 10 C 0.123 3.877 11 N -0.604 5.604 12 H 0.412 0.588 13 C 0.329 3.671 14 C -0.467 4.467 15 H 0.102 0.898 16 C 0.077 3.923 17 N -0.814 5.814 18 Si 0.923 3.077 19 H -0.260 1.260 20 H -0.277 1.277 21 H -0.260 1.260 22 C -0.359 4.359 23 C -0.077 4.077 24 C -0.050 4.050 25 C -0.146 4.146 26 C 0.070 3.930 27 N -0.846 5.846 28 C -0.087 4.087 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.292 0.708 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.056 0.944 46 H 0.017 0.983 47 H 0.067 0.933 48 H 0.339 0.661 49 H 0.335 0.665 50 H 0.053 0.947 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 5.086 10.456 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.199 4.199 4 C -0.126 4.126 5 C -0.023 4.023 6 H 0.054 0.946 7 N -0.387 5.387 8 C 0.119 3.881 9 C -0.329 4.329 10 C -0.007 4.007 11 N -0.215 5.215 12 H 0.253 0.747 13 C 0.220 3.780 14 C -0.500 4.500 15 H 0.120 0.880 16 C -0.141 4.141 17 N -0.442 5.442 18 Si 0.746 3.254 19 H -0.184 1.184 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.388 4.388 23 C -0.115 4.115 24 C -0.051 4.051 25 C -0.203 4.203 26 C -0.061 4.061 27 N -0.377 5.377 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.086 0.914 48 H 0.154 0.846 49 H 0.147 0.853 50 H 0.072 0.928 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.620 4.199 9.876 12.114 hybrid contribution 1.008 1.210 0.544 1.666 sum -4.612 5.409 10.420 12.614 Atomic orbital electron populations 1.22292 0.95505 1.01299 1.00962 1.20368 0.94524 0.95154 0.95585 1.22032 1.01726 0.95341 1.00789 1.21423 0.97349 0.99487 0.94361 1.21153 0.93391 0.95299 0.92496 0.94611 1.73485 1.21592 1.35042 1.08628 1.20205 0.87963 0.87700 0.92204 1.22285 1.04544 1.01939 1.04167 1.21212 0.95283 0.95660 0.88545 1.42048 1.36218 1.18841 1.24428 0.74724 1.17594 0.88573 0.81770 0.90021 1.19484 1.00022 1.21362 1.09116 0.88007 1.26192 0.95449 0.92356 1.00090 1.69335 1.06133 1.32408 1.36294 0.86094 0.77971 0.80570 0.80745 1.18437 1.20164 1.18374 1.20197 1.11148 1.04650 1.02834 1.21298 1.01335 0.98011 0.90846 1.20437 0.94267 0.94242 0.96139 1.22073 0.99055 0.98491 1.00667 1.22265 0.89919 0.97700 0.96251 1.58693 1.05729 1.17685 1.55581 1.21230 0.95181 0.99458 0.96653 0.93415 0.92898 0.92967 0.92170 0.93003 0.93494 0.93268 0.92473 0.86745 0.85481 0.89690 0.87093 0.92799 0.92019 0.91863 0.93747 0.92527 0.96490 0.91409 0.84649 0.85324 0.92807 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.08 37.94 0.31 -1.42 16 2 C -0.06 -0.77 0.71 -154.57 -0.11 -0.88 16 3 C -0.14 -1.84 8.00 37.23 0.30 -1.54 16 4 C -0.09 -1.55 4.10 -27.16 -0.11 -1.66 16 5 C 0.09 1.74 2.53 -68.02 -0.17 1.57 16 6 H 0.04 0.72 3.24 -52.12 -0.17 0.55 16 7 N -0.66 -16.10 10.20 -50.95 -0.52 -16.62 16 8 C 0.28 7.05 6.80 -82.74 -0.56 6.49 16 9 C -0.30 -6.51 9.40 -37.43 -0.35 -6.86 16 10 C 0.12 2.46 11.15 -16.87 -0.19 2.27 16 11 N -0.60 -13.42 4.90 -10.83 -0.05 -13.47 16 12 H 0.41 8.75 6.27 -40.82 -0.26 8.50 16 13 C 0.33 8.18 6.38 -84.16 -0.54 7.64 16 14 C -0.47 -11.25 9.02 -38.06 -0.34 -11.60 16 15 H 0.10 2.40 7.92 -52.49 -0.42 1.98 16 16 C 0.08 1.70 5.17 -17.29 -0.09 1.61 16 17 N -0.81 -17.98 11.10 55.57 0.62 -17.36 16 18 Si 0.92 16.60 29.60 -169.99 -5.03 11.57 16 19 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 20 H -0.28 -4.84 7.11 56.52 0.40 -4.44 16 21 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 22 C -0.36 -9.35 9.83 -37.83 -0.37 -9.73 16 23 C -0.08 -1.39 3.82 -27.17 -0.10 -1.50 16 24 C -0.05 -0.69 0.57 -154.57 -0.09 -0.78 16 25 C -0.15 -1.88 7.74 37.23 0.29 -1.59 16 26 C 0.07 0.86 5.43 -3.04 -0.02 0.85 16 27 N -0.85 -10.36 8.86 -9.67 -0.09 -10.45 16 28 C -0.09 -1.13 3.48 -28.01 -0.10 -1.23 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.62 8.05 -51.92 -0.42 0.21 16 32 H 0.06 0.82 4.68 -51.93 -0.24 0.57 16 33 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.92 8.09 -51.75 -0.42 0.51 16 36 H 0.06 1.07 8.10 -51.76 -0.42 0.65 16 37 H 0.11 2.29 5.87 -52.49 -0.31 1.98 16 38 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 40 H 0.11 2.97 8.06 -52.48 -0.42 2.55 16 41 H 0.05 1.07 8.10 -51.76 -0.42 0.65 16 42 H 0.06 1.27 7.76 -51.75 -0.40 0.87 16 43 H 0.06 0.88 4.61 -51.93 -0.24 0.64 16 44 H 0.04 0.49 8.07 -51.93 -0.42 0.07 16 45 H 0.06 0.73 6.20 -51.93 -0.32 0.41 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 47 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 48 H 0.34 3.89 6.75 -39.29 -0.27 3.62 16 49 H 0.33 3.36 9.08 -39.30 -0.36 3.00 16 50 H 0.05 0.68 7.59 -51.21 -0.39 0.29 16 51 H 0.05 0.58 7.93 -51.22 -0.41 0.17 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -26.86 379.67 -9.98 -36.85 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -8.38 Total: 22.13 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.25 Total: -18.36 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.04 Total: -57.90 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -26.86 -9.98 -36.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169150674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.005 kcal (2) G-P(sol) polarization free energy of solvation -26.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds