Wall clock time and date at job start Fri Apr 10 2020 23:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.54488 * 1 3 3 C 1.53132 * 107.29496 * 2 1 4 4 C 1.52460 * 107.61907 * 241.65901 * 2 1 3 5 5 C 1.52697 * 110.79831 * 189.09544 * 4 2 1 6 6 H 1.08660 * 110.50578 * 299.97725 * 5 4 2 7 7 N 1.46904 * 109.08228 * 180.45503 * 5 4 2 8 8 C 1.32212 * 120.00197 * 127.07481 * 7 5 4 9 9 C 1.46919 * 120.83108 * 354.65187 * 8 7 5 10 10 C 1.34377 * 119.36763 * 179.97438 * 9 8 7 11 11 N 1.36424 * 121.21883 * 359.97438 * 10 9 8 12 12 H 0.97008 * 119.08649 * 179.97438 * 11 10 9 13 13 C 1.37760 * 121.82399 * 0.02562 * 11 10 9 14 14 C 1.40187 * 119.74424 * 180.02562 * 13 11 10 15 15 H 1.08000 * 119.99913 * 201.14847 * 14 13 11 16 16 C 1.40343 * 119.99992 * 21.14817 * 14 13 11 17 17 N 1.30591 * 120.00151 * 18.28963 * 16 14 13 18 18 Si 1.86800 * 120.00004 * 198.29230 * 16 14 13 19 19 H 1.48498 * 109.47390 * 60.00253 * 18 16 14 20 20 H 1.48505 * 109.47056 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47218 * 300.00060 * 18 16 14 22 22 C 1.39065 * 120.51264 * 0.02562 * 13 11 10 23 23 C 1.52695 * 108.85605 * 61.52291 * 5 4 2 24 24 C 1.52453 * 110.77978 * 298.43001 * 23 5 4 25 25 C 1.53141 * 110.00755 * 287.58780 * 24 23 5 26 26 C 1.54488 * 107.62531 * 170.98954 * 24 23 5 27 27 N 1.46899 * 109.47183 * 59.99688 * 26 24 23 28 28 C 1.51740 * 107.95060 * 119.83673 * 2 1 3 29 29 H 1.08999 * 109.47168 * 300.16148 * 1 2 3 30 30 H 1.08995 * 109.47280 * 60.16812 * 1 2 3 31 31 H 1.09009 * 109.46829 * 180.16597 * 1 2 3 32 32 H 1.09005 * 109.47014 * 177.78659 * 3 2 1 33 33 H 1.08995 * 109.47336 * 297.78932 * 3 2 1 34 34 H 1.08999 * 109.47189 * 57.79371 * 3 2 1 35 35 H 1.09315 * 109.41528 * 68.55867 * 4 2 1 36 36 H 1.09301 * 109.43949 * 309.68543 * 4 2 1 37 37 H 1.07997 * 120.31602 * 359.97438 * 9 8 7 38 38 H 1.08000 * 119.39053 * 180.02562 * 10 9 8 39 39 H 0.97001 * 120.00234 * 179.97438 * 17 16 14 40 40 H 1.08008 * 120.62918 * 180.27359 * 22 13 11 41 41 H 1.09296 * 109.29514 * 59.09599 * 23 5 4 42 42 H 1.09313 * 109.26883 * 177.80578 * 23 5 4 43 43 H 1.08997 * 109.46914 * 60.00041 * 25 24 23 44 44 H 1.09002 * 109.46896 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.46692 * 299.99829 * 25 24 23 46 46 H 1.08996 * 109.47314 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46646 * 300.00000 * 26 24 23 48 48 H 1.00902 * 110.99241 * 56.05438 * 27 26 24 49 49 H 1.00893 * 110.99952 * 180.02562 * 27 26 24 50 50 H 1.10259 * 108.55979 * 39.42364 * 28 2 1 51 51 H 1.10242 * 108.62621 * 284.61454 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5449 0.0000 0.0000 3 6 2.0001 1.4621 0.0000 4 6 2.0064 -0.6898 -1.2789 5 6 3.5139 -0.9312 -1.2511 6 1 4.0485 0.0104 -1.1605 7 7 3.9186 -1.5858 -2.5024 8 6 4.8940 -1.0718 -3.2320 9 6 5.5067 0.2140 -2.8715 10 6 6.4966 0.7090 -3.6336 11 7 6.9432 0.0395 -4.7351 12 1 7.6593 0.4256 -5.2635 13 6 6.4046 -1.1691 -5.1186 14 6 6.8973 -1.8198 -6.2583 15 1 6.2922 -2.5590 -6.7621 16 6 8.1770 -1.5107 -6.7447 17 7 9.0412 -0.9087 -5.9725 18 14 8.6441 -1.9604 -8.4965 19 1 7.7261 -1.2790 -9.4441 20 1 10.0397 -1.5284 -8.7631 21 1 8.5379 -3.4308 -8.6753 22 6 5.3759 -1.7486 -4.3838 23 6 3.8450 -1.8498 -0.0772 24 6 3.4511 -1.2012 1.2450 25 6 4.4176 -0.0609 1.5777 26 6 3.6007 -2.2681 2.3523 27 7 4.9947 -2.7286 2.4034 28 6 2.0125 -0.7182 1.2522 29 1 -0.3633 0.5163 0.8885 30 1 -0.3633 0.5112 -0.8914 31 1 -0.3633 -1.0278 0.0030 32 1 3.0887 1.5037 0.0397 33 1 1.6507 1.9514 -0.9091 34 1 1.5852 1.9718 0.8695 35 1 1.7572 -0.0638 -2.1397 36 1 1.4892 -1.6471 -1.3829 37 1 5.1647 0.7561 -2.0023 38 1 6.9475 1.6540 -3.3686 39 1 9.9258 -0.6954 -6.3085 40 1 4.9553 -2.6982 -4.6802 41 1 3.3064 -2.7937 -0.1941 42 1 4.9180 -2.0588 -0.0741 43 1 4.3822 0.6879 0.7865 44 1 4.1279 0.3966 2.5237 45 1 5.4304 -0.4554 1.6596 46 1 3.3252 -1.8349 3.3138 47 1 2.9469 -3.1125 2.1339 48 1 5.6265 -1.9539 2.5406 49 1 5.1185 -3.4278 3.1202 50 1 1.3526 -1.5839 1.4274 51 1 1.8703 -0.0484 2.1162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169150674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:39:51 Heat of formation + Delta-G solvation = -4.331494 kcal Electronic energy + Delta-G solvation = -27651.930984 eV Core-core repulsion = 24162.949282 eV Total energy + Delta-G solvation = -3488.981702 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.99072 -40.16235 -36.90296 -36.42392 -35.27051 -33.02317 -32.38394 -31.88316 -29.12121 -28.67756 -27.64526 -27.48852 -27.01602 -25.40214 -23.61253 -23.00271 -21.19014 -20.33392 -19.74092 -18.72935 -18.35617 -17.39770 -16.94976 -16.45912 -16.27199 -15.84806 -15.57745 -15.50523 -15.13840 -14.82756 -14.62019 -14.51312 -14.38534 -14.20953 -13.78990 -13.59902 -13.41429 -13.16636 -13.06897 -12.82854 -12.75884 -12.67494 -12.52949 -12.46683 -12.32750 -12.23037 -11.88885 -11.84761 -11.72712 -11.53083 -11.33375 -11.24454 -11.15066 -10.88085 -10.57909 -9.98125 -9.46850 -9.11892 -8.97008 -7.67728 -6.60823 0.98343 1.13702 1.41480 1.52654 1.65228 2.16177 2.58746 2.95384 3.51495 3.54909 3.67096 3.88736 3.93352 4.12756 4.14060 4.17335 4.28996 4.34373 4.42510 4.58241 4.65537 4.69680 4.75643 4.76965 4.78689 4.85877 4.89111 4.94939 4.96288 4.99365 5.06010 5.07864 5.09037 5.10285 5.20480 5.20773 5.26577 5.32899 5.39075 5.48323 5.56425 5.57953 5.67218 5.72890 5.76326 5.89899 6.02971 6.13823 6.32606 6.52443 6.55218 6.65552 7.04643 7.24230 8.04164 8.09054 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.003072 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.025425 B = 9111.816089 C = 9624.504785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.080 4.080 5 C 0.088 3.912 6 H 0.037 0.963 7 N -0.700 5.700 8 C 0.263 3.737 9 C -0.316 4.316 10 C 0.134 3.866 11 N -0.604 5.604 12 H 0.417 0.583 13 C 0.320 3.680 14 C -0.497 4.497 15 H 0.093 0.907 16 C 0.051 3.949 17 N -0.821 5.821 18 Si 0.995 3.005 19 H -0.257 1.257 20 H -0.259 1.259 21 H -0.264 1.264 22 C -0.407 4.407 23 C -0.061 4.061 24 C -0.046 4.046 25 C -0.142 4.142 26 C 0.074 3.926 27 N -0.864 5.864 28 C -0.088 4.088 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.132 0.868 38 H 0.182 0.818 39 H 0.307 0.693 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.044 0.956 47 H 0.058 0.942 48 H 0.344 0.656 49 H 0.347 0.653 50 H 0.056 0.944 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 7.383 11.843 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.196 4.196 4 C -0.118 4.118 5 C -0.023 4.023 6 H 0.055 0.945 7 N -0.425 5.425 8 C 0.099 3.901 9 C -0.345 4.345 10 C 0.006 3.994 11 N -0.216 5.216 12 H 0.259 0.741 13 C 0.211 3.789 14 C -0.529 4.529 15 H 0.111 0.889 16 C -0.167 4.167 17 N -0.448 5.448 18 Si 0.815 3.185 19 H -0.181 1.181 20 H -0.183 1.183 21 H -0.189 1.189 22 C -0.437 4.437 23 C -0.099 4.099 24 C -0.047 4.047 25 C -0.199 4.199 26 C -0.057 4.057 27 N -0.397 5.397 28 C -0.126 4.126 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.149 0.851 38 H 0.199 0.801 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.159 0.841 49 H 0.161 0.839 50 H 0.075 0.925 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.813 6.508 11.303 13.902 hybrid contribution 0.834 0.436 0.061 0.943 sum -3.978 6.943 11.365 13.899 Atomic orbital electron populations 1.22248 0.93829 1.01524 1.02056 1.20339 0.95908 0.95506 0.93649 1.22012 1.01345 0.94506 1.01762 1.21352 0.95597 0.98510 0.96329 1.21255 0.94659 0.95214 0.91152 0.94509 1.73372 1.21768 1.36847 1.10527 1.20364 0.88501 0.89228 0.92011 1.22326 1.05582 1.01072 1.05539 1.21889 0.94076 0.96709 0.86775 1.42048 1.36301 1.18074 1.25206 0.74120 1.17686 0.88295 0.82860 0.90030 1.19697 1.01452 1.22147 1.09610 0.88893 1.26931 0.94337 0.91722 1.03741 1.69310 1.06755 1.31024 1.37746 0.85028 0.78383 0.79829 0.75299 1.18084 1.18252 1.18888 1.20130 1.13648 1.04744 1.05139 1.21116 0.98814 0.96883 0.93095 1.20385 0.95467 0.95076 0.93798 1.22038 0.98542 0.97653 1.01699 1.22177 0.89874 0.96943 0.96675 1.58651 1.05925 1.18471 1.56616 1.21229 0.94139 1.00168 0.97021 0.90802 0.93290 0.93271 0.92930 0.93693 0.90710 0.95301 0.94559 0.85088 0.80112 0.88152 0.90158 0.95601 0.95080 0.92879 0.90867 0.92968 0.93745 0.92394 0.84087 0.83930 0.92531 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.08 72.49 0.59 -2.52 16 2 C -0.05 -1.41 0.71 -52.22 -0.04 -1.44 16 3 C -0.14 -3.30 8.00 72.03 0.58 -2.72 16 4 C -0.08 -2.93 4.10 30.31 0.12 -2.81 16 5 C 0.09 3.66 2.53 44.71 0.11 3.78 16 6 H 0.04 1.52 3.24 -2.57 -0.01 1.52 16 7 N -0.70 -36.66 10.20 -315.12 -3.21 -39.88 16 8 C 0.26 13.98 6.80 42.30 0.29 14.27 16 9 C -0.32 -13.99 9.40 23.66 0.22 -13.77 16 10 C 0.13 5.29 11.15 83.10 0.93 6.22 16 11 N -0.60 -26.95 4.90 -188.19 -0.92 -27.87 16 12 H 0.42 17.38 6.27 -92.70 -0.58 16.80 16 13 C 0.32 16.67 6.38 38.88 0.25 16.92 16 14 C -0.50 -24.83 9.02 23.26 0.21 -24.62 16 15 H 0.09 4.65 7.92 -2.91 -0.02 4.63 16 16 C 0.05 2.20 5.17 85.39 0.44 2.64 16 17 N -0.82 -35.27 11.10 21.89 0.24 -35.03 16 18 Si 0.99 33.05 29.60 68.60 2.03 35.08 16 19 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 20 H -0.26 -7.84 7.11 99.48 0.71 -7.13 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 22 C -0.41 -22.98 9.83 23.41 0.23 -22.75 16 23 C -0.06 -2.31 3.82 30.31 0.12 -2.20 16 24 C -0.05 -1.24 0.57 -52.22 -0.03 -1.27 16 25 C -0.14 -3.37 7.74 72.03 0.56 -2.82 16 26 C 0.07 1.72 5.43 86.81 0.47 2.19 16 27 N -0.86 -20.51 8.86 -184.51 -1.63 -22.15 16 28 C -0.09 -2.07 3.48 29.77 0.10 -1.96 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.12 8.05 -2.38 -0.02 1.10 16 32 H 0.05 1.33 4.68 -2.38 -0.01 1.32 16 33 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 1.14 8.09 -2.22 -0.02 1.12 16 36 H 0.04 1.44 8.10 -2.23 -0.02 1.42 16 37 H 0.13 5.25 5.87 -2.91 -0.02 5.23 16 38 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.31 11.54 8.29 -92.71 -0.77 10.77 16 40 H 0.08 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.03 1.08 8.10 -2.23 -0.02 1.07 16 42 H 0.03 1.34 7.76 -2.22 -0.02 1.32 16 43 H 0.05 1.38 4.61 -2.39 -0.01 1.37 16 44 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 45 H 0.05 1.28 6.20 -2.39 -0.01 1.26 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 48 H 0.34 7.51 6.75 -89.69 -0.61 6.90 16 49 H 0.35 6.61 9.08 -89.70 -0.81 5.80 16 50 H 0.06 1.31 7.59 -1.71 -0.01 1.30 16 51 H 0.08 1.48 7.93 -1.72 -0.01 1.47 16 Total: -1.00 -63.82 379.67 0.62 -63.20 By element: Atomic # 1 Polarization: 60.53 SS G_CDS: -1.03 Total: 59.50 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 5.15 Total: -32.86 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.53 Total: -124.92 kcal Atomic # 14 Polarization: 33.05 SS G_CDS: 2.03 Total: 35.08 kcal Total: -63.82 0.62 -63.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169150674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.871 kcal (2) G-P(sol) polarization free energy of solvation -63.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds