Wall clock time and date at job start Fri Apr 10 2020 23:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44799 * 112.18038 * 2 1 4 4 C 1.53336 * 111.16629 * 52.11972 * 3 2 1 5 5 C 1.54498 * 108.18980 * 294.66428 * 3 2 1 6 6 C 1.52664 * 112.99835 * 175.73352 * 3 2 1 7 7 C 1.52843 * 110.39585 * 310.78960 * 6 3 2 8 8 N 1.46835 * 109.22671 * 179.06372 * 7 6 3 9 9 C 1.38820 * 120.00199 * 154.99911 * 8 7 6 10 10 C 1.39799 * 119.57918 * 0.02562 * 9 8 7 11 11 C 1.38604 * 119.48846 * 179.97438 * 10 9 8 12 12 C 1.38388 * 118.67866 * 0.25056 * 11 10 9 13 13 C 1.40553 * 119.15049 * 359.48922 * 12 11 10 14 14 C 1.41321 * 119.78834 * 180.25016 * 13 12 11 15 15 H 1.08003 * 119.99497 * 353.95426 * 14 13 12 16 16 C 1.40016 * 120.00201 * 173.95383 * 14 13 12 17 17 N 1.30741 * 120.00273 * 6.29033 * 16 14 13 18 18 Si 1.86808 * 119.99985 * 186.28481 * 16 14 13 19 19 H 1.48500 * 109.46547 * 94.98765 * 18 16 14 20 20 H 1.48497 * 109.47170 * 214.98750 * 18 16 14 21 21 H 1.48497 * 109.46999 * 334.98916 * 18 16 14 22 22 N 1.31952 * 119.58739 * 179.97438 * 9 8 7 23 23 C 1.52847 * 108.53659 * 60.06491 * 7 6 3 24 24 C 1.44801 * 112.17781 * 138.95880 * 2 1 3 25 25 C 1.53329 * 111.17991 * 307.77969 * 24 2 1 26 26 C 1.54495 * 108.19923 * 65.26294 * 24 2 1 27 27 H 1.09006 * 109.47224 * 59.99966 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47239 * 299.99811 * 1 2 3 30 30 H 1.09004 * 109.46702 * 185.57883 * 4 3 2 31 31 H 1.08997 * 109.47043 * 305.57546 * 4 3 2 32 32 H 1.08992 * 109.47789 * 65.58029 * 4 3 2 33 33 H 1.09002 * 109.47257 * 297.64932 * 5 3 2 34 34 H 1.08998 * 109.47870 * 57.65612 * 5 3 2 35 35 H 1.09005 * 109.46803 * 177.65940 * 5 3 2 36 36 H 1.09245 * 109.42959 * 190.37039 * 6 3 2 37 37 H 1.09240 * 109.44029 * 71.22906 * 6 3 2 38 38 H 1.08696 * 110.43743 * 298.85919 * 7 6 3 39 39 H 0.97001 * 119.99786 * 334.99950 * 8 7 6 40 40 H 1.08000 * 120.25739 * 0.02562 * 10 9 8 41 41 H 1.07999 * 120.65933 * 179.97438 * 11 10 9 42 42 H 1.07997 * 120.42208 * 179.74582 * 12 11 10 43 43 H 0.97006 * 120.00104 * 179.97438 * 17 16 14 44 44 H 1.09231 * 109.37866 * 60.30097 * 23 7 6 45 45 H 1.09233 * 109.37448 * 179.39244 * 23 7 6 46 46 H 1.08996 * 109.47351 * 60.00359 * 25 24 2 47 47 H 1.09004 * 109.46613 * 180.02562 * 25 24 2 48 48 H 1.08999 * 109.47322 * 300.00097 * 25 24 2 49 49 H 1.08997 * 109.46829 * 59.99968 * 26 24 2 50 50 H 1.08995 * 109.46813 * 180.02562 * 26 24 2 51 51 H 1.09003 * 109.47164 * 300.00019 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0156 1.3408 0.0000 4 6 1.4116 2.1850 1.1286 5 6 1.6305 2.0187 -1.3339 6 6 3.5385 1.3641 0.1045 7 6 4.0075 0.4673 1.2499 8 7 5.4743 0.4910 1.3130 9 6 6.1222 0.2146 2.5093 10 6 5.3695 -0.0856 3.6484 11 6 6.0183 -0.3617 4.8416 12 6 7.4014 -0.3261 4.8693 13 6 8.1022 -0.0230 3.6892 14 6 9.5149 0.0118 3.7008 15 1 10.0500 -0.0971 4.6326 16 6 10.2208 0.1875 2.5045 17 7 9.5757 0.4420 1.3961 18 14 12.0844 0.0585 2.4919 19 1 12.4824 -1.3206 2.1113 20 1 12.6407 1.0232 1.5097 21 1 12.6112 0.3702 3.8449 22 7 7.4407 0.2377 2.5566 23 6 3.5387 -0.9608 0.9721 24 6 2.0156 -1.0113 0.8804 25 6 1.4136 -0.9057 2.2866 26 6 1.6290 -2.3985 0.3206 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.7656 3.2124 1.0432 31 1 0.3244 2.1678 1.0532 32 1 1.7155 1.7750 2.0917 33 1 2.0774 1.4697 -2.1627 34 1 0.5458 2.0194 -1.4413 35 1 1.9968 3.0453 -1.3387 36 1 3.8748 2.3877 0.2849 37 1 3.9728 1.0109 -0.8335 38 1 3.6078 0.8207 2.1968 39 1 5.9906 0.6997 0.5188 40 1 4.2907 -0.1031 3.5988 41 1 5.4554 -0.5956 5.7332 42 1 7.9356 -0.5326 5.7849 43 1 10.0648 0.5641 0.5673 44 1 3.9713 -1.3077 0.0311 45 1 3.8763 -1.6162 1.7781 46 1 0.3334 -1.0403 2.2306 47 1 1.8437 -1.6776 2.9249 48 1 1.6361 0.0762 2.7043 49 1 2.0401 -2.5129 -0.6823 50 1 2.0306 -3.1768 0.9694 51 1 0.5431 -2.4842 0.2801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170450883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:07 Heat of formation + Delta-G solvation = 42.308451 kcal Electronic energy + Delta-G solvation = -28249.253626 eV Core-core repulsion = 24762.294383 eV Total energy + Delta-G solvation = -3486.959242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.45679 -38.15461 -35.54610 -35.16911 -33.39479 -31.73585 -30.25804 -29.36154 -27.89534 -27.73340 -26.68653 -26.23298 -25.70411 -25.24729 -21.82265 -21.32433 -20.64890 -19.96096 -17.66262 -17.29827 -16.33119 -15.83577 -15.71613 -15.07107 -14.75874 -14.47604 -14.28014 -14.06598 -13.89380 -13.31287 -13.28730 -12.95104 -12.85960 -12.77946 -12.68478 -12.38606 -12.26037 -11.93368 -11.79056 -11.73277 -11.56751 -11.45193 -11.31579 -11.22684 -11.09446 -10.96629 -10.77326 -10.59917 -10.58520 -10.42670 -10.25883 -10.09565 -9.83871 -9.40869 -8.82501 -7.93321 -7.87529 -7.46319 -6.45638 -6.30276 -4.43686 2.90225 3.13190 3.16725 3.27555 3.33112 3.70266 4.00978 4.12109 4.72850 4.81321 4.86583 4.89628 4.96981 5.09319 5.29253 5.32378 5.38086 5.46075 5.50662 5.55255 5.61885 5.66942 5.69694 5.74527 5.79747 5.82403 5.88414 5.93251 5.98446 6.07813 6.09231 6.14066 6.16257 6.19687 6.21059 6.27653 6.36244 6.40812 6.53859 6.70045 6.89815 6.93447 7.00289 7.28245 7.29017 7.59917 7.64261 7.85376 7.96490 8.21108 8.41606 8.74258 8.84377 9.16847 10.28529 10.44181 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003385 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.685032 B = 8269.526753 C = 8775.582775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.572 5.572 3 C 0.149 3.851 4 C -0.184 4.184 5 C -0.142 4.142 6 C -0.117 4.117 7 C 0.169 3.831 8 N -0.734 5.734 9 C 0.414 3.586 10 C -0.367 4.367 11 C -0.032 4.032 12 C -0.318 4.318 13 C 0.293 3.707 14 C -0.437 4.437 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.716 5.716 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.262 1.262 22 N -0.532 5.532 23 C -0.123 4.123 24 C 0.146 3.854 25 C -0.180 4.180 26 C -0.142 4.142 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.269 0.731 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.059 0.941 50 H 0.057 0.943 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.337 0.294 -5.480 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.296 5.296 3 C 0.059 3.941 4 C -0.243 4.243 5 C -0.199 4.199 6 C -0.155 4.155 7 C 0.062 3.938 8 N -0.369 5.369 9 C 0.174 3.826 10 C -0.393 4.393 11 C -0.057 4.057 12 C -0.341 4.341 13 C 0.166 3.834 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.153 4.153 17 N -0.338 5.338 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.254 5.254 23 C -0.162 4.162 24 C 0.056 3.944 25 C -0.239 4.239 26 C -0.200 4.200 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.843 0.388 -6.713 17.211 hybrid contribution 0.268 0.020 1.210 1.239 sum -15.575 0.407 -5.503 16.524 Atomic orbital electron populations 1.22220 0.86514 1.01692 1.00217 1.56474 1.06116 1.08648 1.58375 1.20314 0.93447 0.85770 0.94533 1.22717 1.01086 1.00664 0.99817 1.22308 1.01142 0.99665 0.96832 1.21885 0.93656 1.00585 0.99377 1.20540 0.81389 0.93887 0.97989 1.44329 1.03467 1.79074 1.10069 1.18528 0.90116 0.89277 0.84668 1.20615 0.97448 1.26551 0.94645 1.20588 0.94240 0.95360 0.95497 1.21520 0.93745 1.19355 0.99476 1.18193 0.93143 0.86414 0.85608 1.19576 0.90182 1.42799 0.94316 0.89957 1.26029 1.00269 0.93518 0.95435 1.70156 1.36478 1.28004 0.99122 0.86383 0.82855 0.78751 0.79187 1.19601 1.20263 1.18600 1.68225 1.03683 1.25333 1.28114 1.22144 0.92531 0.98680 1.02857 1.20403 0.94178 0.90505 0.89278 1.22702 1.00583 1.02480 0.98140 1.22327 1.00759 0.95479 1.01388 0.91873 0.91527 0.95403 0.92133 0.92431 0.92312 0.92101 0.92769 0.92503 0.90896 0.91004 0.90625 0.77151 0.89234 0.89140 0.88840 0.92002 0.91448 0.90723 0.92896 0.91986 0.92461 0.92151 0.92411 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 7.55 60.06 0.45 0.83 16 2 N -0.57 -6.32 3.54 -212.79 -0.75 -7.08 16 3 C 0.15 1.67 0.68 -131.94 -0.09 1.58 16 4 C -0.18 -1.99 7.66 37.33 0.29 -1.70 16 5 C -0.14 -1.38 8.17 37.94 0.31 -1.07 16 6 C -0.12 -1.54 4.13 -26.98 -0.11 -1.66 16 7 C 0.17 2.67 1.99 -67.91 -0.14 2.54 16 8 N -0.73 -14.73 5.23 -53.95 -0.28 -15.01 16 9 C 0.41 10.11 7.64 -155.33 -1.19 8.92 16 10 C -0.37 -8.47 8.97 -38.86 -0.35 -8.81 16 11 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 12 C -0.32 -8.16 9.83 -38.65 -0.38 -8.54 16 13 C 0.29 8.26 6.54 -85.00 -0.56 7.70 16 14 C -0.44 -11.98 9.13 -37.74 -0.34 -12.33 16 15 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 16 C 0.07 1.88 5.49 -17.35 -0.10 1.78 16 17 N -0.72 -19.20 11.49 55.55 0.64 -18.56 16 18 Si 0.90 18.95 29.56 -169.99 -5.03 13.93 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 N -0.53 -14.78 7.92 -10.33 -0.08 -14.86 16 23 C -0.12 -1.81 4.23 -26.98 -0.11 -1.93 16 24 C 0.15 1.75 0.68 -131.94 -0.09 1.66 16 25 C -0.18 -2.11 7.64 37.33 0.29 -1.82 16 26 C -0.14 -1.54 8.16 37.94 0.31 -1.23 16 27 H 0.06 0.53 6.36 -51.93 -0.33 0.20 16 28 H 0.07 0.58 5.82 -51.93 -0.30 0.27 16 29 H 0.03 0.26 5.74 -51.93 -0.30 -0.04 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.56 6.22 -51.93 -0.32 0.23 16 32 H 0.06 0.71 5.03 -51.93 -0.26 0.45 16 33 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 34 H 0.05 0.47 6.37 -51.93 -0.33 0.14 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.98 8.07 -51.79 -0.42 0.56 16 37 H 0.07 0.96 8.05 -51.79 -0.42 0.55 16 38 H 0.08 1.29 4.57 -52.10 -0.24 1.05 16 39 H 0.39 8.00 8.72 -40.82 -0.36 7.64 16 40 H 0.09 1.86 6.19 -52.49 -0.32 1.53 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 42 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.55 8.29 -40.82 -0.34 6.22 16 44 H 0.07 1.04 8.07 -51.80 -0.42 0.63 16 45 H 0.07 1.26 7.75 -51.80 -0.40 0.85 16 46 H 0.05 0.54 6.96 -51.93 -0.36 0.18 16 47 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 48 H 0.06 0.72 5.09 -51.93 -0.26 0.46 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.05 0.50 6.18 -51.93 -0.32 0.18 16 LS Contribution 373.89 15.07 5.63 5.63 Total: -1.00 -28.99 373.89 -10.37 -39.36 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.29 Total: 11.83 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.21 Total: -15.24 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.48 Total: -55.51 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.99 -10.37 -39.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170450883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.666 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds