Wall clock time and date at job start Fri Apr 10 2020 23:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.44799 * 112.18038 * 2 1 4 4 C 1.53336 * 111.16629 * 52.11972 * 3 2 1 5 5 C 1.54498 * 108.18980 * 294.66428 * 3 2 1 6 6 C 1.52664 * 112.99835 * 175.73352 * 3 2 1 7 7 C 1.52843 * 110.39585 * 310.78960 * 6 3 2 8 8 N 1.46835 * 109.22671 * 179.06372 * 7 6 3 9 9 C 1.38820 * 120.00199 * 154.99911 * 8 7 6 10 10 C 1.39799 * 119.57918 * 0.02562 * 9 8 7 11 11 C 1.38604 * 119.48846 * 179.97438 * 10 9 8 12 12 C 1.38388 * 118.67866 * 0.25056 * 11 10 9 13 13 C 1.40553 * 119.15049 * 359.48922 * 12 11 10 14 14 C 1.41321 * 119.78834 * 180.25016 * 13 12 11 15 15 H 1.08003 * 119.99497 * 353.95426 * 14 13 12 16 16 C 1.40016 * 120.00201 * 173.95383 * 14 13 12 17 17 N 1.30741 * 120.00273 * 6.29033 * 16 14 13 18 18 Si 1.86808 * 119.99985 * 186.28481 * 16 14 13 19 19 H 1.48500 * 109.46547 * 94.98765 * 18 16 14 20 20 H 1.48497 * 109.47170 * 214.98750 * 18 16 14 21 21 H 1.48497 * 109.46999 * 334.98916 * 18 16 14 22 22 N 1.31952 * 119.58739 * 179.97438 * 9 8 7 23 23 C 1.52847 * 108.53659 * 60.06491 * 7 6 3 24 24 C 1.44801 * 112.17781 * 138.95880 * 2 1 3 25 25 C 1.53329 * 111.17991 * 307.77969 * 24 2 1 26 26 C 1.54495 * 108.19923 * 65.26294 * 24 2 1 27 27 H 1.09006 * 109.47224 * 59.99966 * 1 2 3 28 28 H 1.09005 * 109.46947 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47239 * 299.99811 * 1 2 3 30 30 H 1.09004 * 109.46702 * 185.57883 * 4 3 2 31 31 H 1.08997 * 109.47043 * 305.57546 * 4 3 2 32 32 H 1.08992 * 109.47789 * 65.58029 * 4 3 2 33 33 H 1.09002 * 109.47257 * 297.64932 * 5 3 2 34 34 H 1.08998 * 109.47870 * 57.65612 * 5 3 2 35 35 H 1.09005 * 109.46803 * 177.65940 * 5 3 2 36 36 H 1.09245 * 109.42959 * 190.37039 * 6 3 2 37 37 H 1.09240 * 109.44029 * 71.22906 * 6 3 2 38 38 H 1.08696 * 110.43743 * 298.85919 * 7 6 3 39 39 H 0.97001 * 119.99786 * 334.99950 * 8 7 6 40 40 H 1.08000 * 120.25739 * 0.02562 * 10 9 8 41 41 H 1.07999 * 120.65933 * 179.97438 * 11 10 9 42 42 H 1.07997 * 120.42208 * 179.74582 * 12 11 10 43 43 H 0.97006 * 120.00104 * 179.97438 * 17 16 14 44 44 H 1.09231 * 109.37866 * 60.30097 * 23 7 6 45 45 H 1.09233 * 109.37448 * 179.39244 * 23 7 6 46 46 H 1.08996 * 109.47351 * 60.00359 * 25 24 2 47 47 H 1.09004 * 109.46613 * 180.02562 * 25 24 2 48 48 H 1.08999 * 109.47322 * 300.00097 * 25 24 2 49 49 H 1.08997 * 109.46829 * 59.99968 * 26 24 2 50 50 H 1.08995 * 109.46813 * 180.02562 * 26 24 2 51 51 H 1.09003 * 109.47164 * 300.00019 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0156 1.3408 0.0000 4 6 1.4116 2.1850 1.1286 5 6 1.6305 2.0187 -1.3339 6 6 3.5385 1.3641 0.1045 7 6 4.0075 0.4673 1.2499 8 7 5.4743 0.4910 1.3130 9 6 6.1222 0.2146 2.5093 10 6 5.3695 -0.0856 3.6484 11 6 6.0183 -0.3617 4.8416 12 6 7.4014 -0.3261 4.8693 13 6 8.1022 -0.0230 3.6892 14 6 9.5149 0.0118 3.7008 15 1 10.0500 -0.0971 4.6326 16 6 10.2208 0.1875 2.5045 17 7 9.5757 0.4420 1.3961 18 14 12.0844 0.0585 2.4919 19 1 12.4824 -1.3206 2.1113 20 1 12.6407 1.0232 1.5097 21 1 12.6112 0.3702 3.8449 22 7 7.4407 0.2377 2.5566 23 6 3.5387 -0.9608 0.9721 24 6 2.0156 -1.0113 0.8804 25 6 1.4136 -0.9057 2.2866 26 6 1.6290 -2.3985 0.3206 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.7656 3.2124 1.0432 31 1 0.3244 2.1678 1.0532 32 1 1.7155 1.7750 2.0917 33 1 2.0774 1.4697 -2.1627 34 1 0.5458 2.0194 -1.4413 35 1 1.9968 3.0453 -1.3387 36 1 3.8748 2.3877 0.2849 37 1 3.9728 1.0109 -0.8335 38 1 3.6078 0.8207 2.1968 39 1 5.9906 0.6997 0.5188 40 1 4.2907 -0.1031 3.5988 41 1 5.4554 -0.5956 5.7332 42 1 7.9356 -0.5326 5.7849 43 1 10.0648 0.5641 0.5673 44 1 3.9713 -1.3077 0.0311 45 1 3.8763 -1.6162 1.7781 46 1 0.3334 -1.0403 2.2306 47 1 1.8437 -1.6776 2.9249 48 1 1.6361 0.0762 2.7043 49 1 2.0401 -2.5129 -0.6823 50 1 2.0306 -3.1768 0.9694 51 1 0.5431 -2.4842 0.2801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170450883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:06 Heat of formation + Delta-G solvation = 26.642649 kcal Electronic energy + Delta-G solvation = -28249.932946 eV Core-core repulsion = 24762.294383 eV Total energy + Delta-G solvation = -3487.638562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50805 -39.98505 -37.05707 -36.11042 -35.26206 -33.20284 -32.12740 -30.71807 -29.30152 -28.62908 -27.59315 -27.47604 -27.04858 -26.60525 -23.51831 -23.02280 -21.63125 -21.55491 -19.23738 -18.79321 -17.85742 -16.98398 -16.82861 -16.62033 -16.38682 -15.91954 -15.54283 -15.30657 -15.11568 -14.80005 -14.47233 -14.37601 -14.20459 -13.91098 -13.73575 -13.67341 -13.56182 -13.13077 -13.03973 -12.78270 -12.74991 -12.64963 -12.55903 -12.42587 -12.38056 -12.29729 -12.18789 -12.11154 -11.79837 -11.72598 -11.57797 -11.44650 -11.18788 -11.14463 -10.57482 -9.83531 -9.43696 -8.79270 -8.28075 -8.23589 -6.47586 1.06197 1.34681 1.41038 1.55098 1.57832 2.25006 2.58712 2.81979 2.92339 3.70396 3.79917 3.88241 3.93022 4.03777 4.10791 4.28318 4.31058 4.36694 4.42387 4.46993 4.54304 4.71538 4.73630 4.75095 4.79089 4.81340 4.87712 4.90508 4.93865 4.94959 4.98119 5.00365 5.03475 5.05971 5.09521 5.12145 5.16707 5.21805 5.25988 5.32725 5.36732 5.40195 5.45539 5.53741 5.72382 5.96375 6.08149 6.23004 6.43522 6.57163 6.67647 6.84512 6.94840 7.23346 8.35031 8.51573 Molecular weight = 317.22amu Principal moments of inertia in cm(-1) A = 0.020144 B = 0.003385 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.685032 B = 8269.526753 C = 8775.582775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.576 5.576 3 C 0.150 3.850 4 C -0.180 4.180 5 C -0.136 4.136 6 C -0.111 4.111 7 C 0.171 3.829 8 N -0.730 5.730 9 C 0.400 3.600 10 C -0.364 4.364 11 C -0.030 4.030 12 C -0.344 4.344 13 C 0.260 3.740 14 C -0.473 4.473 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.752 5.752 18 Si 0.985 3.015 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.256 1.256 22 N -0.565 5.565 23 C -0.114 4.114 24 C 0.150 3.850 25 C -0.176 4.176 26 C -0.137 4.137 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.276 0.724 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 0.380 -6.088 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.301 5.301 3 C 0.060 3.940 4 C -0.239 4.239 5 C -0.194 4.194 6 C -0.149 4.149 7 C 0.065 3.935 8 N -0.363 5.363 9 C 0.159 3.841 10 C -0.389 4.389 11 C -0.055 4.055 12 C -0.367 4.367 13 C 0.133 3.867 14 C -0.505 4.505 15 H 0.103 0.897 16 C -0.194 4.194 17 N -0.374 5.374 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.180 1.180 22 N -0.288 5.288 23 C -0.153 4.153 24 C 0.060 3.940 25 C -0.235 4.235 26 C -0.195 4.195 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.224 0.776 40 H 0.130 0.870 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.681 0.477 -7.330 19.146 hybrid contribution 0.679 0.001 1.387 1.544 sum -17.002 0.479 -5.943 18.017 Atomic orbital electron populations 1.22318 0.84797 1.02593 1.01001 1.56520 1.07436 1.08219 1.57903 1.20313 0.91587 0.86299 0.95811 1.22686 1.02058 1.00513 0.98675 1.22253 1.02129 0.99613 0.95363 1.21853 0.95628 0.99563 0.97857 1.20719 0.78742 0.95310 0.98702 1.44545 1.05151 1.78024 1.08613 1.18942 0.89748 0.88970 0.86458 1.20894 0.98554 1.25285 0.94208 1.20982 0.93714 0.93900 0.96867 1.21671 0.94941 1.20901 0.99232 1.18668 0.94120 0.87187 0.86704 1.19929 0.90677 1.44548 0.95392 0.89660 1.26939 1.05542 0.92485 0.94468 1.70250 1.38764 1.28525 0.99846 0.85160 0.75851 0.78935 0.79480 1.19027 1.19216 1.17967 1.68202 1.05277 1.26735 1.28593 1.22018 0.95014 0.97084 1.01220 1.20302 0.91877 0.91750 0.90045 1.22666 1.01732 1.01602 0.97527 1.22282 1.01993 0.94418 1.00824 0.90594 0.90648 0.95033 0.91898 0.90826 0.93850 0.92608 0.91204 0.91962 0.91217 0.91276 0.91558 0.77598 0.86962 0.85592 0.88080 0.91373 0.92504 0.93101 0.90954 0.92775 0.93442 0.92683 0.92750 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 7.55 127.69 0.96 1.55 16 2 N -0.58 -11.47 3.54 -827.12 -2.93 -14.39 16 3 C 0.15 3.07 0.68 4.43 0.00 3.07 16 4 C -0.18 -3.52 7.66 72.09 0.55 -2.97 16 5 C -0.14 -2.29 8.17 72.49 0.59 -1.70 16 6 C -0.11 -2.87 4.13 30.43 0.13 -2.75 16 7 C 0.17 5.43 1.99 44.82 0.09 5.52 16 8 N -0.73 -30.14 5.23 -324.61 -1.70 -31.83 16 9 C 0.40 20.05 7.64 133.42 1.02 21.07 16 10 C -0.36 -16.87 8.97 22.74 0.20 -16.67 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 12 C -0.34 -18.09 9.83 22.87 0.22 -17.87 16 13 C 0.26 15.22 6.54 40.18 0.26 15.48 16 14 C -0.47 -26.91 9.13 23.46 0.21 -26.70 16 15 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 16 C 0.03 1.45 5.49 85.29 0.47 1.91 16 17 N -0.75 -41.52 11.49 21.83 0.25 -41.27 16 18 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 22 N -0.57 -32.63 7.92 -186.58 -1.48 -34.11 16 23 C -0.11 -3.38 4.23 30.43 0.13 -3.25 16 24 C 0.15 3.39 0.68 4.43 0.00 3.39 16 25 C -0.18 -3.82 7.64 72.09 0.55 -3.27 16 26 C -0.14 -2.74 8.16 72.49 0.59 -2.15 16 27 H 0.08 0.98 6.36 -2.38 -0.02 0.96 16 28 H 0.07 1.02 5.82 -2.38 -0.01 1.00 16 29 H 0.03 0.46 5.74 -2.39 -0.01 0.45 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.20 6.22 -2.39 -0.01 1.19 16 32 H 0.04 0.98 5.03 -2.39 -0.01 0.97 16 33 H 0.05 1.01 8.12 -2.39 -0.02 0.99 16 34 H 0.07 0.98 6.37 -2.39 -0.02 0.96 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.85 8.07 -2.26 -0.02 1.83 16 37 H 0.07 1.83 8.05 -2.26 -0.02 1.82 16 38 H 0.07 2.26 4.57 -2.55 -0.01 2.25 16 39 H 0.39 16.49 8.72 -92.71 -0.81 15.68 16 40 H 0.11 4.60 6.19 -2.91 -0.02 4.59 16 41 H 0.13 4.87 8.06 -2.91 -0.02 4.84 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 43 H 0.28 13.76 8.29 -92.70 -0.77 12.99 16 44 H 0.06 1.79 8.07 -2.26 -0.02 1.77 16 45 H 0.05 1.74 7.75 -2.26 -0.02 1.72 16 46 H 0.07 1.28 6.96 -2.39 -0.02 1.27 16 47 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16 48 H 0.05 1.12 5.09 -2.39 -0.01 1.11 16 49 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.07 1.16 6.18 -2.39 -0.01 1.14 16 Total: -1.00 -64.79 373.89 2.52 -62.27 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: 0.13 Total: 44.37 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 6.22 Total: -26.51 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -5.85 Total: -121.61 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -64.79 2.52 -62.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170450883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.911 kcal (2) G-P(sol) polarization free energy of solvation -64.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds