Wall clock time and date at job start Fri Apr 10 2020 23:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00323 * 2 1 4 4 H 1.48499 * 109.46669 * 269.99745 * 3 2 1 5 5 H 1.48499 * 109.46949 * 29.99250 * 3 2 1 6 6 H 1.48497 * 109.47181 * 149.99893 * 3 2 1 7 7 C 1.38801 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00210 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00262 * 180.02562 * 7 2 1 10 10 C 1.80995 * 100.00235 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47051 * 179.97438 * 10 9 7 12 12 O 1.20831 * 120.00364 * 359.97438 * 11 10 9 13 13 O 1.34236 * 120.00143 * 180.02562 * 11 10 9 14 14 C 1.45201 * 117.00127 * 179.97438 * 13 11 10 15 15 C 1.50693 * 109.46842 * 179.97438 * 14 13 11 16 16 C 1.38297 * 119.97326 * 269.97884 * 15 14 13 17 17 C 1.38247 * 120.11092 * 180.02562 * 16 15 14 18 18 C 1.38173 * 120.05281 * 359.67853 * 17 16 15 19 19 C 1.38708 * 119.94454 * 0.61764 * 18 17 16 20 20 O 1.35901 * 120.05358 * 179.68139 * 19 18 17 21 21 C 1.42900 * 117.00024 * 359.72168 * 20 19 18 22 22 F 1.39905 * 109.47006 * 60.00330 * 21 20 19 23 23 F 1.39900 * 109.47309 * 300.00630 * 21 20 19 24 24 C 1.38123 * 119.97441 * 90.00362 * 15 14 13 25 25 H 0.97000 * 119.99629 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.46792 * 59.99851 * 10 9 7 27 27 H 1.08997 * 109.47159 * 300.00085 * 10 9 7 28 28 H 1.09000 * 109.46573 * 59.99878 * 14 13 11 29 29 H 1.08994 * 109.47214 * 300.00127 * 14 13 11 30 30 H 1.08000 * 119.93998 * 359.97438 * 16 15 14 31 31 H 1.07992 * 119.96915 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.02036 * 180.29701 * 18 17 16 33 33 H 1.09004 * 109.47113 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.02411 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2022 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5730 -3.2326 0.0026 12 8 6.3412 -2.3000 0.0014 13 8 6.0437 -4.4898 0.0030 14 6 7.4865 -4.6534 0.0025 15 6 7.8254 -6.1217 0.0037 16 6 7.9817 -6.7938 1.2023 17 6 8.2932 -8.1407 1.2067 18 6 8.4425 -8.8203 0.0129 19 6 8.2922 -8.1472 -1.1905 20 8 8.4450 -8.8120 -2.3659 21 6 8.7660 -10.2023 -2.2879 22 9 7.7500 -10.8778 -1.6033 23 9 9.9760 -10.3639 -1.6046 24 6 7.9801 -6.7952 -1.1922 25 1 -0.4849 0.8401 -0.0004 26 1 3.6439 -3.4322 -0.8874 27 1 3.6433 -3.4311 0.8926 28 1 7.9057 -4.1833 0.8922 29 1 7.9051 -4.1842 -0.8878 30 1 7.8611 -6.2652 2.1363 31 1 8.4152 -8.6631 2.1439 32 1 8.6810 -9.8736 0.0170 33 1 8.8601 -10.6105 -3.2943 34 1 7.8587 -6.2698 -2.1279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065326075.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:11 Heat of formation + Delta-G solvation = -224.856657 kcal Electronic energy + Delta-G solvation = -22739.394861 eV Core-core repulsion = 18591.863114 eV Total energy + Delta-G solvation = -4147.531746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.057 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.33577 -48.33213 -41.65203 -40.98557 -38.79240 -37.48016 -34.68713 -33.29667 -31.64878 -31.27970 -27.95679 -27.61155 -26.97787 -23.76646 -22.96296 -22.35607 -20.00296 -19.78705 -19.15168 -18.90821 -18.73342 -17.79825 -17.55826 -17.19986 -17.08720 -16.63806 -16.03816 -15.99328 -15.68128 -15.09120 -14.98846 -14.92002 -14.78496 -14.66933 -14.54288 -14.05894 -13.84107 -13.55877 -13.50312 -13.33079 -13.01951 -12.93169 -12.76208 -12.49605 -12.11655 -11.88507 -11.78727 -11.65323 -11.17904 -10.62587 -10.10897 -9.54435 -9.05991 -8.52141 -6.25720 -0.07380 0.24605 0.82972 1.07051 1.32682 1.39016 1.50400 1.56550 1.87572 2.24121 2.52929 2.57247 2.71142 2.85979 3.41593 3.49834 3.67702 3.73430 3.83206 3.85117 3.99888 4.11652 4.17413 4.24417 4.35578 4.42340 4.53225 4.83448 5.03954 5.19204 5.27370 5.37865 5.44002 5.70072 5.96290 6.11984 6.61783 6.91719 8.60189 Molecular weight = 318.06amu Principal moments of inertia in cm(-1) A = 0.031796 B = 0.002167 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.395557 B =12920.519030 C =13222.816747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.233 1.233 7 C -0.532 4.532 8 H 0.064 0.936 9 S -0.160 6.160 10 C -0.091 4.091 11 C 0.492 3.508 12 O -0.515 6.515 13 O -0.347 6.347 14 C 0.105 3.895 15 C -0.070 4.070 16 C -0.122 4.122 17 C -0.084 4.084 18 C -0.188 4.188 19 C 0.089 3.911 20 O -0.330 6.330 21 C 0.406 3.594 22 F -0.210 7.210 23 F -0.208 7.208 24 C -0.123 4.123 25 H 0.278 0.722 26 H 0.124 0.876 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.141 0.859 33 H 0.234 0.766 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.472 -22.602 -2.278 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.157 1.157 7 C -0.680 4.680 8 H 0.083 0.917 9 S 0.067 5.933 10 C -0.239 4.239 11 C 0.334 3.666 12 O -0.403 6.403 13 O -0.264 6.264 14 C 0.032 3.968 15 C -0.070 4.070 16 C -0.140 4.140 17 C -0.102 4.102 18 C -0.206 4.206 19 C 0.046 3.954 20 O -0.248 6.248 21 C 0.317 3.683 22 F -0.192 7.192 23 F -0.190 7.190 24 C -0.141 4.141 25 H 0.087 0.913 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.159 0.841 33 H 0.250 0.750 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 22.282 -21.339 -2.430 30.947 hybrid contribution -1.046 -0.533 0.152 1.183 sum 21.236 -21.872 -2.279 30.570 Atomic orbital electron populations 1.70016 1.07367 1.29151 1.48731 1.25581 0.95299 1.02356 0.92757 0.85865 0.80754 0.79425 0.80320 1.18576 1.18342 1.15680 1.22417 0.89869 0.96904 1.58768 0.91738 1.84608 1.06986 1.04039 1.97687 1.22948 0.91540 1.00506 1.08932 1.22818 0.91044 0.80874 0.71822 1.90667 1.59233 1.44672 1.45748 1.86559 1.26784 1.29138 1.83966 1.21989 0.76919 0.93209 1.04721 1.19295 1.00490 0.93829 0.93407 1.21379 0.99548 0.95021 0.98026 1.21286 0.96514 0.93914 0.98499 1.21807 1.05101 1.01406 0.92310 1.18913 0.99491 0.92320 0.84690 1.86624 1.85063 1.23248 1.29816 1.24275 0.71239 0.77575 0.95233 1.93083 1.61842 1.80514 1.83712 1.93079 1.47225 1.94930 1.83779 1.20469 1.02781 0.91600 0.99282 0.91258 0.85775 0.85614 0.88818 0.89460 0.83537 0.82375 0.84117 0.74994 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 13.97 21.65 0.30 -54.71 16 2 C 0.05 2.64 5.50 84.86 0.47 3.11 16 3 Si 0.91 43.69 27.74 68.60 1.90 45.60 16 4 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.23 -10.96 6.74 99.48 0.67 -10.29 16 7 C -0.53 -30.36 10.04 67.95 0.68 -29.68 16 8 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 9 S -0.16 -7.78 18.55 -56.49 -1.05 -8.82 16 10 C -0.09 -3.43 6.27 71.23 0.45 -2.98 16 11 C 0.49 16.98 7.98 71.23 0.57 17.55 16 12 O -0.51 -20.30 15.61 21.95 0.34 -19.96 16 13 O -0.35 -9.96 10.20 -51.48 -0.53 -10.48 16 14 C 0.10 2.40 5.59 71.23 0.40 2.79 16 15 C -0.07 -1.44 5.52 -19.88 -0.11 -1.55 16 16 C -0.12 -2.14 9.70 22.29 0.22 -1.92 16 17 C -0.08 -1.33 10.04 22.26 0.22 -1.11 16 18 C -0.19 -3.33 8.26 22.37 0.18 -3.14 16 19 C 0.09 1.75 6.48 22.50 0.15 1.89 16 20 O -0.33 -5.39 10.43 -92.44 -0.96 -6.35 16 21 C 0.41 3.92 5.98 113.37 0.68 4.60 16 22 F -0.21 -2.88 15.57 44.97 0.70 -2.18 16 23 F -0.21 -2.66 15.60 44.97 0.70 -1.95 16 24 C -0.12 -2.53 9.64 22.36 0.22 -2.31 16 25 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 26 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 27 H 0.13 4.39 8.14 -2.40 -0.02 4.37 16 28 H 0.09 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.14 2.23 5.10 -2.91 -0.01 2.21 16 33 H 0.23 -0.32 8.14 -2.38 -0.02 -0.34 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -71.73 325.80 6.64 -65.10 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.11 Total: 6.53 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.12 Total: -12.76 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.30 Total: -54.71 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.15 Total: -36.80 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 1.40 Total: -4.14 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.60 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -1.05 Total: -8.82 kcal Total: -71.73 6.64 -65.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065326075.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.759 kcal (2) G-P(sol) polarization free energy of solvation -71.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds