Wall clock time and date at job start Fri Apr 10 2020 23:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38191 * 120.40425 * 2 1 4 4 N 1.31877 * 120.78349 * 179.97438 * 3 2 1 5 5 C 1.31981 * 121.70163 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 119.62888 * 179.97438 * 5 4 3 7 7 C 1.38343 * 120.73660 * 0.02562 * 5 4 3 8 8 S 1.76201 * 120.42543 * 180.02562 * 7 5 4 9 9 O 1.42099 * 106.40369 * 45.96920 * 8 7 5 10 10 O 1.42102 * 106.40323 * 178.89000 * 8 7 5 11 11 N 1.65601 * 107.21524 * 292.42807 * 8 7 5 12 12 C 1.46503 * 119.99972 * 277.06195 * 11 8 7 13 13 C 1.46507 * 119.99901 * 97.06742 * 11 8 7 14 14 H 1.08994 * 109.46937 * 359.97438 * 13 11 8 15 15 C 1.52999 * 109.47122 * 120.00175 * 13 11 8 16 16 C 1.50701 * 109.46800 * 239.99538 * 13 11 8 17 17 H 1.07997 * 120.00154 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99787 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99905 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99994 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47088 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46995 * 120.00334 * 20 18 16 23 23 H 1.48495 * 109.47069 * 240.00401 * 20 18 16 24 24 C 1.38612 * 119.15002 * 359.74432 * 7 5 4 25 25 H 1.08995 * 109.47461 * 89.99482 * 1 2 3 26 26 H 1.08998 * 109.46855 * 209.99831 * 1 2 3 27 27 H 1.09001 * 109.46598 * 329.99569 * 1 2 3 28 28 H 1.08005 * 119.60966 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46791 * 94.97222 * 12 11 8 30 30 H 1.08999 * 109.46954 * 214.96635 * 12 11 8 31 31 H 1.09000 * 109.47278 * 334.96916 * 12 11 8 32 32 H 1.09006 * 109.46883 * 299.99572 * 15 13 11 33 33 H 1.08992 * 109.47368 * 59.99456 * 15 13 11 34 34 H 1.08998 * 109.47339 * 180.02562 * 15 13 11 35 35 H 0.97006 * 119.99395 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.78116 * 180.27051 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1919 0.0000 4 7 3.5251 1.2006 0.0005 5 6 4.2261 0.0823 0.0015 6 17 5.9605 0.1566 0.0015 7 6 3.5941 -1.1483 0.0016 8 16 4.5380 -2.6362 0.0036 9 8 5.5519 -2.4668 0.9848 10 8 3.6021 -3.7051 0.0296 11 7 5.3119 -2.7277 -1.4576 12 6 4.6070 -3.2567 -2.6279 13 6 6.7014 -2.2796 -1.5799 14 1 7.0539 -1.9211 -0.6129 15 6 7.5752 -3.4479 -2.0409 16 6 6.7821 -1.1632 -2.5890 17 1 5.8879 -0.8214 -3.0888 18 6 7.9975 -0.5776 -2.8733 19 7 9.0864 -0.9936 -2.2642 20 14 8.0976 0.8067 -4.1236 21 1 6.7422 1.0862 -4.6621 22 1 8.6310 2.0279 -3.4683 23 1 8.9990 0.4067 -5.2338 24 6 2.2088 -1.1959 0.0059 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6666 2.1273 -0.0004 29 1 4.1805 -2.4318 -3.1987 30 1 5.3073 -3.8086 -3.2549 31 1 3.8090 -3.9232 -2.3008 32 1 7.5168 -4.2554 -1.3110 33 1 7.2224 -3.8060 -3.0080 34 1 8.6090 -3.1147 -2.1315 35 1 9.9415 -0.5818 -2.4646 36 1 1.6883 -2.1422 0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885002112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:07 Heat of formation + Delta-G solvation = -34.805413 kcal Electronic energy + Delta-G solvation = -23667.562900 eV Core-core repulsion = 20112.361826 eV Total energy + Delta-G solvation = -3555.201075 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.059 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25643 -36.92574 -36.29469 -36.10636 -35.36067 -33.62369 -32.61397 -32.18627 -29.10067 -27.33381 -25.67080 -25.14720 -24.20300 -22.59940 -20.76933 -18.44128 -17.63633 -17.26311 -16.76567 -16.59737 -16.30028 -15.19766 -14.77191 -14.48000 -14.04119 -13.62390 -13.44904 -13.34422 -13.19824 -12.96402 -12.82780 -12.42431 -12.01735 -11.92474 -11.67433 -11.50761 -11.25803 -11.15020 -11.04236 -10.93014 -10.85941 -10.59842 -10.42749 -10.24369 -10.10196 -10.00685 -9.54022 -9.22683 -8.78803 -8.44765 -8.00911 -6.07968 -4.13517 0.50151 0.91721 1.03029 2.13723 3.25559 3.30594 3.34841 3.37862 3.59451 4.11740 4.37138 4.41849 4.47848 4.67925 4.78832 4.94743 5.16899 5.23679 5.34370 5.48806 5.57660 5.62909 5.68251 5.91686 6.13174 6.27215 6.34232 6.58427 6.82144 6.85210 7.08518 7.41514 7.59964 7.63192 7.78692 8.03435 8.25242 8.87088 9.51165 10.97197 Molecular weight = 318.06amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.006935 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.092093 B = 4036.673262 C = 4910.223676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.172 4.172 3 C 0.160 3.840 4 N -0.490 5.490 5 C 0.257 3.743 6 Cl 0.052 6.948 7 C -0.717 4.717 8 S 2.684 3.316 9 O -0.942 6.942 10 O -0.973 6.973 11 N -0.973 5.973 12 C 0.097 3.903 13 C 0.260 3.740 14 H 0.071 0.929 15 C -0.146 4.146 16 C -0.514 4.514 17 H 0.061 0.939 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.886 3.114 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.027 3.973 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.166 0.834 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.034 0.966 34 H 0.095 0.905 35 H 0.263 0.737 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 0.568 2.656 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.175 4.175 3 C 0.003 3.997 4 N -0.201 5.201 5 C 0.092 3.908 6 Cl 0.082 6.918 7 C -0.802 4.802 8 S 2.770 3.230 9 O -0.932 6.932 10 O -0.963 6.963 11 N -0.814 5.814 12 C -0.050 4.050 13 C 0.158 3.842 14 H 0.088 0.912 15 C -0.205 4.205 16 C -0.554 4.554 17 H 0.079 0.921 18 C -0.134 4.134 19 N -0.525 5.525 20 Si 0.714 3.286 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C 0.001 3.999 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.183 0.817 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.375 0.858 3.345 13.814 hybrid contribution -0.469 0.905 -1.151 1.537 sum -13.844 1.763 2.194 14.128 Atomic orbital electron populations 1.20694 0.89299 1.03388 1.02911 1.20999 0.98085 0.94149 1.04297 1.22895 0.88789 0.97942 0.90106 1.67353 1.08381 1.30007 1.14385 1.21728 0.90923 0.88418 0.89689 1.98620 1.00612 1.98093 1.94508 1.32156 1.08128 1.20991 1.18901 1.02321 0.73028 0.73349 0.74263 1.93607 1.55895 1.86150 1.57550 1.93499 1.64800 1.50891 1.87120 1.57365 1.23463 1.76192 1.24376 1.21335 0.96643 0.98102 0.88872 1.19034 0.73263 0.92688 0.99238 0.91168 1.22088 1.04045 0.96491 0.97912 1.21316 0.93857 1.16907 1.23295 0.92061 1.24806 0.95628 0.96823 0.96122 1.69875 0.98792 1.41684 1.42167 0.86619 0.78156 0.82387 0.81453 1.19810 1.20870 1.20984 1.21266 0.91118 0.99519 0.88041 0.90621 0.90953 0.90983 0.81668 0.93586 0.90230 0.91840 0.96789 0.94699 0.88623 0.92730 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.04 36.00 0.36 -0.45 16 2 C -0.17 -2.08 5.90 -104.48 -0.62 -2.70 16 3 C 0.16 2.12 10.86 -17.55 -0.19 1.93 16 4 N -0.49 -8.61 10.34 -10.36 -0.11 -8.71 16 5 C 0.26 5.00 7.26 -17.45 -0.13 4.88 16 6 Cl 0.05 1.14 22.18 -51.86 -1.15 -0.01 16 7 C -0.72 -12.87 5.94 -39.40 -0.23 -13.10 16 8 S 2.68 52.90 5.13 -107.50 -0.55 52.35 16 9 O -0.94 -21.00 14.79 -57.17 -0.85 -21.85 16 10 O -0.97 -18.81 15.77 -57.17 -0.90 -19.71 16 11 N -0.97 -19.82 3.06 -115.85 -0.35 -20.18 16 12 C 0.10 1.65 9.98 59.85 0.60 2.25 16 13 C 0.26 6.13 1.70 -69.08 -0.12 6.01 16 14 H 0.07 1.81 5.11 -51.93 -0.27 1.54 16 15 C -0.15 -3.34 8.94 37.16 0.33 -3.00 16 16 C -0.51 -12.77 6.63 -34.44 -0.23 -13.00 16 17 H 0.06 1.53 7.51 -52.49 -0.39 1.13 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -23.70 11.32 55.43 0.63 -23.07 16 20 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.03 0.39 9.35 -39.29 -0.37 0.02 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.05 0.75 7.99 -51.93 -0.41 0.33 16 30 H 0.08 1.32 6.45 -51.93 -0.33 0.99 16 31 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.03 0.74 6.69 -51.93 -0.35 0.39 16 34 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 35 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 36 H 0.16 1.91 7.44 -52.49 -0.39 1.52 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -30.27 318.44 -8.26 -38.53 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.07 Total: -2.21 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -0.68 Total: -15.49 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.17 Total: -51.96 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.75 Total: -41.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 52.90 SS G_CDS: -0.55 Total: 52.35 kcal Atomic # 17 Polarization: 1.14 SS G_CDS: -1.15 Total: -0.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.27 -8.26 -38.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885002112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.725 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds