Wall clock time and date at job start Fri Apr 10 2020 23:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38191 * 120.40425 * 2 1 4 4 N 1.31877 * 120.78349 * 179.97438 * 3 2 1 5 5 C 1.31981 * 121.70163 * 359.97438 * 4 3 2 6 6 Cl 1.73605 * 119.62888 * 179.97438 * 5 4 3 7 7 C 1.38343 * 120.73660 * 0.02562 * 5 4 3 8 8 S 1.76201 * 120.42543 * 180.02562 * 7 5 4 9 9 O 1.42099 * 106.40369 * 45.96920 * 8 7 5 10 10 O 1.42102 * 106.40323 * 178.89000 * 8 7 5 11 11 N 1.65601 * 107.21524 * 292.42807 * 8 7 5 12 12 C 1.46503 * 119.99972 * 277.06195 * 11 8 7 13 13 C 1.46507 * 119.99901 * 97.06742 * 11 8 7 14 14 H 1.08994 * 109.46937 * 359.97438 * 13 11 8 15 15 C 1.52999 * 109.47122 * 120.00175 * 13 11 8 16 16 C 1.50701 * 109.46800 * 239.99538 * 13 11 8 17 17 H 1.07997 * 120.00154 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99787 * 179.97438 * 16 13 11 19 19 N 1.31517 * 119.99905 * 0.02562 * 18 16 13 20 20 Si 1.86802 * 119.99994 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47088 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46995 * 120.00334 * 20 18 16 23 23 H 1.48495 * 109.47069 * 240.00401 * 20 18 16 24 24 C 1.38612 * 119.15002 * 359.74432 * 7 5 4 25 25 H 1.08995 * 109.47461 * 89.99482 * 1 2 3 26 26 H 1.08998 * 109.46855 * 209.99831 * 1 2 3 27 27 H 1.09001 * 109.46598 * 329.99569 * 1 2 3 28 28 H 1.08005 * 119.60966 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.46791 * 94.97222 * 12 11 8 30 30 H 1.08999 * 109.46954 * 214.96635 * 12 11 8 31 31 H 1.09000 * 109.47278 * 334.96916 * 12 11 8 32 32 H 1.09006 * 109.46883 * 299.99572 * 15 13 11 33 33 H 1.08992 * 109.47368 * 59.99456 * 15 13 11 34 34 H 1.08998 * 109.47339 * 180.02562 * 15 13 11 35 35 H 0.97006 * 119.99395 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.78116 * 180.27051 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1919 0.0000 4 7 3.5251 1.2006 0.0005 5 6 4.2261 0.0823 0.0015 6 17 5.9605 0.1566 0.0015 7 6 3.5941 -1.1483 0.0016 8 16 4.5380 -2.6362 0.0036 9 8 5.5519 -2.4668 0.9848 10 8 3.6021 -3.7051 0.0296 11 7 5.3119 -2.7277 -1.4576 12 6 4.6070 -3.2567 -2.6279 13 6 6.7014 -2.2796 -1.5799 14 1 7.0539 -1.9211 -0.6129 15 6 7.5752 -3.4479 -2.0409 16 6 6.7821 -1.1632 -2.5890 17 1 5.8879 -0.8214 -3.0888 18 6 7.9975 -0.5776 -2.8733 19 7 9.0864 -0.9936 -2.2642 20 14 8.0976 0.8067 -4.1236 21 1 6.7422 1.0862 -4.6621 22 1 8.6310 2.0279 -3.4683 23 1 8.9990 0.4067 -5.2338 24 6 2.2088 -1.1959 0.0059 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.6666 2.1273 -0.0004 29 1 4.1805 -2.4318 -3.1987 30 1 5.3073 -3.8086 -3.2549 31 1 3.8090 -3.9232 -2.3008 32 1 7.5168 -4.2554 -1.3110 33 1 7.2224 -3.8060 -3.0080 34 1 8.6090 -3.1147 -2.1315 35 1 9.9415 -0.5818 -2.4646 36 1 1.6883 -2.1422 0.0105 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885002112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:40:06 Heat of formation + Delta-G solvation = -55.704906 kcal Electronic energy + Delta-G solvation = -23668.469170 eV Core-core repulsion = 20112.361826 eV Total energy + Delta-G solvation = -3556.107345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 318.059 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43765 -38.49198 -37.92131 -37.63578 -36.95754 -34.68865 -34.46876 -33.37301 -30.87902 -28.22837 -27.28859 -26.96562 -25.38977 -23.73720 -22.54539 -19.93286 -19.03330 -18.62852 -18.29696 -18.11554 -17.81814 -16.90792 -16.31960 -15.85898 -15.27397 -15.09911 -14.82172 -14.68031 -14.53540 -14.03071 -13.98105 -13.66994 -13.51362 -13.31051 -13.19622 -13.10856 -12.99195 -12.77269 -12.71091 -12.43555 -12.35256 -12.27702 -12.18478 -11.87316 -11.77000 -11.48051 -11.01774 -10.80514 -10.41406 -9.98103 -9.64813 -8.03744 -6.12491 -0.77724 -0.52972 -0.13205 0.73821 1.39839 1.45042 1.51729 1.92979 2.28810 2.47382 2.64535 3.12797 3.26632 3.38070 3.63317 3.76604 3.90544 3.99504 4.14652 4.43324 4.62440 4.76660 4.83357 4.85454 5.01963 5.05568 5.06040 5.07760 5.19054 5.23526 5.42818 5.67400 5.74858 5.93430 6.14623 6.35042 6.41517 6.91704 7.53590 9.01153 Molecular weight = 318.06amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.006935 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.092093 B = 4036.673262 C = 4910.223676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.147 4.147 3 C 0.158 3.842 4 N -0.513 5.513 5 C 0.233 3.767 6 Cl 0.008 6.992 7 C -0.725 4.725 8 S 2.694 3.306 9 O -0.977 6.977 10 O -0.972 6.972 11 N -0.982 5.982 12 C 0.090 3.910 13 C 0.264 3.736 14 H 0.046 0.954 15 C -0.141 4.141 16 C -0.503 4.503 17 H 0.058 0.942 18 C 0.030 3.970 19 N -0.913 5.913 20 Si 0.931 3.069 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.017 3.983 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.211 0.789 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.022 0.978 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.914 1.075 2.033 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.150 4.150 3 C 0.001 3.999 4 N -0.225 5.225 5 C 0.068 3.932 6 Cl 0.038 6.962 7 C -0.813 4.813 8 S 2.783 3.217 9 O -0.967 6.967 10 O -0.962 6.962 11 N -0.822 5.822 12 C -0.055 4.055 13 C 0.160 3.840 14 H 0.064 0.936 15 C -0.201 4.201 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.553 5.553 20 Si 0.759 3.241 21 H -0.194 1.194 22 H -0.215 1.215 23 H -0.206 1.206 24 C -0.009 4.009 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.228 0.772 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.082 1.325 2.706 17.346 hybrid contribution 0.409 0.803 -0.904 1.276 sum -16.674 2.129 1.802 16.905 Atomic orbital electron populations 1.20882 0.85340 1.05425 1.04584 1.21544 1.00568 0.92576 1.00308 1.23755 0.87358 1.00451 0.88344 1.67299 1.10527 1.29480 1.15169 1.21589 0.89432 0.89627 0.92569 1.98595 1.04285 1.98219 1.95141 1.31780 1.09550 1.19090 1.20923 1.01749 0.72736 0.73706 0.73517 1.93563 1.57501 1.86845 1.58793 1.93486 1.64364 1.51384 1.87014 1.57257 1.22730 1.76667 1.25538 1.21549 0.97079 0.98750 0.88093 1.18726 0.75064 0.92509 0.97659 0.93625 1.21982 1.02657 0.96598 0.98852 1.21401 0.93377 1.16790 1.22708 0.92408 1.25338 0.95637 0.98485 0.97540 1.69983 0.99055 1.42790 1.43480 0.85905 0.78111 0.80227 0.79891 1.19401 1.21546 1.20592 1.21698 0.89661 1.01728 0.87790 0.88816 0.89582 0.88445 0.77232 0.92874 0.90025 0.89543 0.95916 0.93432 0.90961 0.92983 0.80245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.04 71.24 0.72 -0.28 16 2 C -0.15 -2.93 5.90 -19.77 -0.12 -3.04 16 3 C 0.16 3.60 10.86 84.67 0.92 4.52 16 4 N -0.51 -17.32 10.34 -186.69 -1.93 -19.25 16 5 C 0.23 9.02 7.26 84.70 0.61 9.63 16 6 Cl 0.01 0.38 22.18 -2.72 -0.06 0.32 16 7 C -0.72 -25.36 5.94 22.38 0.13 -25.22 16 8 S 2.69 105.89 5.13 -56.49 -0.29 105.60 16 9 O -0.98 -45.01 14.79 -128.00 -1.89 -46.90 16 10 O -0.97 -36.31 15.77 -128.00 -2.02 -38.33 16 11 N -0.98 -39.89 3.06 -520.43 -1.59 -41.48 16 12 C 0.09 2.96 9.98 127.77 1.28 4.24 16 13 C 0.26 12.69 1.70 44.24 0.08 12.76 16 14 H 0.05 2.46 5.11 -2.39 -0.01 2.45 16 15 C -0.14 -6.57 8.94 71.98 0.64 -5.93 16 16 C -0.50 -25.28 6.63 25.60 0.17 -25.11 16 17 H 0.06 2.89 7.51 -2.91 -0.02 2.87 16 18 C 0.03 1.55 5.30 84.65 0.45 2.00 16 19 N -0.91 -50.19 11.32 21.45 0.24 -49.95 16 20 Si 0.93 42.54 29.54 68.60 2.03 44.57 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 C 0.02 0.45 9.35 22.46 0.21 0.66 16 25 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.67 8.09 -2.39 -0.02 0.65 16 27 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 28 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.05 1.65 7.99 -2.39 -0.02 1.63 16 30 H 0.08 2.62 6.45 -2.39 -0.02 2.60 16 31 H 0.09 2.41 7.02 -2.39 -0.02 2.39 16 32 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 2.02 6.69 -2.39 -0.02 2.00 16 34 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 35 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 36 H 0.18 3.72 7.44 -2.91 -0.02 3.70 16 Total: -1.00 -67.83 318.44 0.68 -67.15 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.11 Total: 4.05 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 5.09 Total: -25.77 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -3.28 Total: -110.68 kcal Atomic # 8 Polarization: -81.32 SS G_CDS: -3.91 Total: -85.23 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 105.89 SS G_CDS: -0.29 Total: 105.60 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.06 Total: 0.32 kcal Total: -67.83 0.68 -67.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885002112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.442 kcal (2) G-P(sol) polarization free energy of solvation -67.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds