Wall clock time and date at job start Fri Apr 10 2020 23:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35613 * 117.00214 * 2 1 4 4 C 1.38519 * 120.07849 * 359.97201 * 3 2 1 5 5 C 1.38016 * 120.31033 * 179.74675 * 4 3 2 6 6 C 1.40005 * 120.46632 * 0.55633 * 5 4 3 7 7 C 1.48253 * 119.92798 * 179.71930 * 6 5 4 8 8 C 1.39491 * 120.17832 * 114.97391 * 7 6 5 9 9 F 1.35106 * 120.04710 * 0.02562 * 8 7 6 10 10 C 1.38256 * 119.90422 * 180.25591 * 8 7 6 11 11 C 1.38399 * 120.26636 * 359.74704 * 10 8 7 12 12 C 1.38116 * 120.35749 * 359.97438 * 11 10 8 13 13 C 1.38850 * 120.09146 * 0.02562 * 12 11 10 14 14 S 1.76203 * 120.13314 * 179.97438 * 13 12 11 15 15 C 1.81401 * 103.00047 * 359.97438 * 14 13 12 16 16 C 1.38652 * 120.14520 * 359.44396 * 6 5 4 17 17 C 1.40518 * 119.68705 * 0.27443 * 16 6 5 18 18 C 1.41178 * 120.22588 * 179.97438 * 17 16 6 19 19 H 1.07997 * 119.99886 * 150.06072 * 18 17 16 20 20 C 1.39890 * 119.99841 * 330.06507 * 18 17 16 21 21 N 1.30892 * 119.99973 * 161.78014 * 20 18 17 22 22 Si 1.86795 * 120.00245 * 341.77645 * 20 18 17 23 23 H 1.48500 * 109.47083 * 95.40746 * 22 20 18 24 24 H 1.48505 * 109.47211 * 215.40664 * 22 20 18 25 25 H 1.48502 * 109.47321 * 335.40901 * 22 20 18 26 26 H 1.08995 * 109.47716 * 300.00894 * 1 2 3 27 27 H 1.08999 * 109.46754 * 60.00666 * 1 2 3 28 28 H 1.09006 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.84484 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.76905 * 180.29578 * 5 4 3 31 31 H 1.08007 * 119.87118 * 179.77001 * 10 8 7 32 32 H 1.07998 * 119.82011 * 179.97438 * 11 10 8 33 33 H 1.08002 * 119.95632 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.47292 * 300.00515 * 15 14 13 35 35 H 1.08993 * 109.47013 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.46783 * 60.00469 * 15 14 13 37 37 H 1.08006 * 120.15828 * 180.29816 * 16 6 5 38 38 H 0.96996 * 120.00221 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2919 2.3711 -0.0006 5 6 1.9135 3.6033 0.0047 6 6 3.3107 3.6936 -0.0010 7 6 3.9659 5.0235 -0.0016 8 6 4.7371 5.4256 1.0889 9 9 4.8896 4.6030 2.1498 10 6 5.3413 6.6692 1.0847 11 6 5.1885 7.5153 0.0002 12 6 4.4320 7.1259 -1.0878 13 6 3.8186 5.8803 -1.0993 14 16 2.8528 5.3826 -2.4864 15 6 2.9689 6.8113 -3.5981 16 6 4.0828 2.5420 -0.0005 17 6 3.4565 1.2841 0.0001 18 6 4.2317 0.1042 0.0001 19 1 3.8510 -0.7920 0.4673 20 6 5.4930 0.0960 -0.6048 21 7 6.3532 -0.8461 -0.3119 22 14 5.9497 1.4294 -1.8307 23 1 6.6925 2.5096 -1.1333 24 1 6.8050 0.8494 -2.8972 25 1 4.7147 1.9891 -2.4363 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.2134 2.3132 -0.0006 30 1 1.3180 4.5043 0.0090 31 1 5.9353 6.9815 1.9310 32 1 5.6633 8.4853 0.0047 33 1 4.3167 7.7915 -1.9305 34 1 2.5644 7.6928 -3.1005 35 1 2.3985 6.6129 -4.5055 36 1 4.0133 6.9869 -3.8562 37 1 5.1607 2.6114 0.0000 38 1 7.2277 -0.8520 -0.7316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243124201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:10 Heat of formation + Delta-G solvation = -35.884904 kcal Electronic energy + Delta-G solvation = -24128.157857 eV Core-core repulsion = 20555.422860 eV Total energy + Delta-G solvation = -3572.734997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.46119 -39.15118 -38.45829 -36.26534 -33.68908 -31.75696 -30.92510 -30.46315 -28.70780 -28.04942 -26.59552 -24.96797 -23.06436 -22.50245 -21.28666 -20.01279 -17.96236 -17.38493 -16.93473 -16.35983 -15.97090 -15.53802 -15.36948 -15.02393 -14.77130 -14.64753 -14.23116 -13.81438 -13.77886 -13.56166 -13.16965 -13.00650 -12.67527 -12.59399 -12.18536 -12.06868 -11.95611 -11.63967 -11.50021 -11.19815 -10.96712 -10.69802 -10.59039 -10.11628 -9.92064 -9.73759 -9.65823 -9.58226 -9.09832 -8.50826 -7.71410 -7.32744 -6.99038 -6.86600 -4.32263 1.16731 1.26531 1.61318 2.48383 2.53283 2.65574 3.17489 3.24375 3.40235 3.63133 4.05968 4.36263 4.45692 4.50500 4.84650 4.99940 5.00563 5.04596 5.10855 5.36736 5.39433 5.58509 5.66846 5.69614 5.75943 5.85965 6.01650 6.08106 6.12686 6.18935 6.28729 6.32504 6.51714 6.79828 6.92345 6.97539 7.17752 7.44451 7.51048 7.70727 7.97060 8.24111 8.45933 8.82917 8.85254 10.15770 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.006016 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.255579 B = 4653.092617 C = 5242.149627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.306 6.306 3 C 0.043 3.957 4 C -0.173 4.173 5 C -0.172 4.172 6 C -0.055 4.055 7 C -0.035 4.035 8 C 0.124 3.876 9 F -0.125 7.125 10 C -0.164 4.164 11 C -0.084 4.084 12 C -0.151 4.151 13 C -0.060 4.060 14 S -0.063 6.063 15 C -0.167 4.167 16 C -0.187 4.187 17 C 0.078 3.922 18 C -0.429 4.429 19 H 0.096 0.904 20 C 0.085 3.915 21 N -0.808 5.808 22 Si 0.896 3.104 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.237 1.237 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 14.927 -3.532 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C -0.001 4.001 4 C -0.192 4.192 5 C -0.192 4.192 6 C -0.056 4.056 7 C -0.042 4.042 8 C 0.103 3.897 9 F -0.104 7.104 10 C -0.186 4.186 11 C -0.104 4.104 12 C -0.175 4.175 13 C -0.173 4.173 14 S 0.182 5.818 15 C -0.336 4.336 16 C -0.207 4.207 17 C 0.075 3.925 18 C -0.457 4.457 19 H 0.114 0.886 20 C -0.133 4.133 21 N -0.433 5.433 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.217 1.217 25 H -0.159 1.159 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.052 13.511 -3.861 14.932 hybrid contribution 0.930 1.769 -0.051 1.999 sum -4.123 15.280 -3.912 16.302 Atomic orbital electron populations 1.22802 0.81312 1.02137 1.00104 1.86016 1.18550 1.27841 1.89566 1.19244 0.92037 0.82903 1.05955 1.20579 0.97816 0.92402 1.08436 1.20012 0.92062 0.95803 1.11320 1.17974 0.93172 0.89264 1.05190 1.18671 0.98304 0.95277 0.91946 1.17678 0.98439 0.88856 0.84748 1.91543 1.93749 1.71525 1.53543 1.21049 1.03272 0.93395 1.00868 1.20768 0.97918 0.99164 0.92518 1.21065 1.00987 0.95438 1.00019 1.21754 1.01417 0.96351 0.97759 1.86330 1.61281 1.22482 1.11679 1.23814 1.05747 1.01270 1.02731 1.20716 0.97684 0.90725 1.11550 1.17006 0.88495 0.93136 0.93865 1.19277 0.98167 0.97697 1.30581 0.88567 1.26088 0.94844 0.96043 0.96343 1.69716 1.05883 1.31904 1.35768 0.86525 0.80411 0.80472 0.80418 1.19710 1.21679 1.15937 0.93981 0.93886 0.89718 0.87711 0.88246 0.84750 0.85157 0.85545 0.90083 0.87612 0.90098 0.87583 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.81 101.05 0.99 1.52 16 2 O -0.31 -6.98 9.83 -18.54 -0.18 -7.16 16 3 C 0.04 1.05 6.72 -38.28 -0.26 0.79 16 4 C -0.17 -3.70 9.01 -39.56 -0.36 -4.06 16 5 C -0.17 -3.65 8.71 -39.00 -0.34 -3.99 16 6 C -0.06 -1.24 4.29 -104.96 -0.45 -1.69 16 7 C -0.04 -0.70 5.32 -104.64 -0.56 -1.25 16 8 C 0.12 2.29 7.23 -39.11 -0.28 2.01 16 9 F -0.13 -2.54 16.65 2.25 0.04 -2.50 16 10 C -0.16 -2.36 10.01 -39.52 -0.40 -2.75 16 11 C -0.08 -1.03 10.03 -39.57 -0.40 -1.43 16 12 C -0.15 -2.02 9.36 -39.40 -0.37 -2.39 16 13 C -0.06 -1.01 6.13 -38.69 -0.24 -1.24 16 14 S -0.06 -1.00 20.74 -107.50 -2.23 -3.22 16 15 C -0.17 -1.69 9.15 101.05 0.92 -0.77 16 16 C -0.19 -4.72 6.63 -38.57 -0.26 -4.97 16 17 C 0.08 2.07 5.11 -106.72 -0.55 1.53 16 18 C -0.43 -12.14 9.18 -37.85 -0.35 -12.48 16 19 H 0.10 2.89 7.89 -52.49 -0.41 2.48 16 20 C 0.09 2.33 5.40 -17.33 -0.09 2.24 16 21 N -0.81 -22.35 13.93 55.55 0.77 -21.57 16 22 Si 0.90 21.76 24.52 -169.99 -4.17 17.59 16 23 H -0.27 -6.50 6.71 56.52 0.38 -6.12 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.86 6.87 56.52 0.39 -5.48 16 26 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 27 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.10 1.91 6.27 -52.49 -0.33 1.58 16 30 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.31 5.88 -52.49 -0.31 1.00 16 34 H 0.08 0.70 7.75 -51.92 -0.40 0.30 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.75 7.75 -51.92 -0.40 0.35 16 37 H 0.11 2.76 4.75 -52.48 -0.25 2.51 16 38 H 0.28 7.13 8.30 -40.82 -0.34 6.79 16 LS Contribution 332.80 15.07 5.02 5.02 Total: -1.00 -30.76 332.80 -7.91 -38.67 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.19 Total: 2.12 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -2.97 Total: -28.94 kcal Atomic # 7 Polarization: -22.35 SS G_CDS: 0.77 Total: -21.57 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.18 Total: -7.16 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.17 Total: 17.59 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.23 Total: -3.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.76 -7.91 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243124201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.781 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds