Wall clock time and date at job start Fri Apr 10 2020 23:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35613 * 117.00214 * 2 1 4 4 C 1.38519 * 120.07849 * 359.97201 * 3 2 1 5 5 C 1.38016 * 120.31033 * 179.74675 * 4 3 2 6 6 C 1.40005 * 120.46632 * 0.55633 * 5 4 3 7 7 C 1.48253 * 119.92798 * 179.71930 * 6 5 4 8 8 C 1.39491 * 120.17832 * 114.97391 * 7 6 5 9 9 F 1.35106 * 120.04710 * 0.02562 * 8 7 6 10 10 C 1.38256 * 119.90422 * 180.25591 * 8 7 6 11 11 C 1.38399 * 120.26636 * 359.74704 * 10 8 7 12 12 C 1.38116 * 120.35749 * 359.97438 * 11 10 8 13 13 C 1.38850 * 120.09146 * 0.02562 * 12 11 10 14 14 S 1.76203 * 120.13314 * 179.97438 * 13 12 11 15 15 C 1.81401 * 103.00047 * 359.97438 * 14 13 12 16 16 C 1.38652 * 120.14520 * 359.44396 * 6 5 4 17 17 C 1.40518 * 119.68705 * 0.27443 * 16 6 5 18 18 C 1.41178 * 120.22588 * 179.97438 * 17 16 6 19 19 H 1.07997 * 119.99886 * 150.06072 * 18 17 16 20 20 C 1.39890 * 119.99841 * 330.06507 * 18 17 16 21 21 N 1.30892 * 119.99973 * 161.78014 * 20 18 17 22 22 Si 1.86795 * 120.00245 * 341.77645 * 20 18 17 23 23 H 1.48500 * 109.47083 * 95.40746 * 22 20 18 24 24 H 1.48505 * 109.47211 * 215.40664 * 22 20 18 25 25 H 1.48502 * 109.47321 * 335.40901 * 22 20 18 26 26 H 1.08995 * 109.47716 * 300.00894 * 1 2 3 27 27 H 1.08999 * 109.46754 * 60.00666 * 1 2 3 28 28 H 1.09006 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.84484 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.76905 * 180.29578 * 5 4 3 31 31 H 1.08007 * 119.87118 * 179.77001 * 10 8 7 32 32 H 1.07998 * 119.82011 * 179.97438 * 11 10 8 33 33 H 1.08002 * 119.95632 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.47292 * 300.00515 * 15 14 13 35 35 H 1.08993 * 109.47013 * 180.02562 * 15 14 13 36 36 H 1.09002 * 109.46783 * 60.00469 * 15 14 13 37 37 H 1.08006 * 120.15828 * 180.29816 * 16 6 5 38 38 H 0.96996 * 120.00221 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2919 2.3711 -0.0006 5 6 1.9135 3.6033 0.0047 6 6 3.3107 3.6936 -0.0010 7 6 3.9659 5.0235 -0.0016 8 6 4.7371 5.4256 1.0889 9 9 4.8896 4.6030 2.1498 10 6 5.3413 6.6692 1.0847 11 6 5.1885 7.5153 0.0002 12 6 4.4320 7.1259 -1.0878 13 6 3.8186 5.8803 -1.0993 14 16 2.8528 5.3826 -2.4864 15 6 2.9689 6.8113 -3.5981 16 6 4.0828 2.5420 -0.0005 17 6 3.4565 1.2841 0.0001 18 6 4.2317 0.1042 0.0001 19 1 3.8510 -0.7920 0.4673 20 6 5.4930 0.0960 -0.6048 21 7 6.3532 -0.8461 -0.3119 22 14 5.9497 1.4294 -1.8307 23 1 6.6925 2.5096 -1.1333 24 1 6.8050 0.8494 -2.8972 25 1 4.7147 1.9891 -2.4363 26 1 -0.3634 0.5139 0.8898 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 0.2134 2.3132 -0.0006 30 1 1.3180 4.5043 0.0090 31 1 5.9353 6.9815 1.9310 32 1 5.6633 8.4853 0.0047 33 1 4.3167 7.7915 -1.9305 34 1 2.5644 7.6928 -3.1005 35 1 2.3985 6.6129 -4.5055 36 1 4.0133 6.9869 -3.8562 37 1 5.1607 2.6114 0.0000 38 1 7.2277 -0.8520 -0.7316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243124201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:09 Heat of formation + Delta-G solvation = -53.775080 kcal Electronic energy + Delta-G solvation = -24128.933633 eV Core-core repulsion = 20555.422860 eV Total energy + Delta-G solvation = -3573.510773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.88482 -40.77304 -39.81164 -37.94742 -35.62496 -33.26401 -32.29391 -32.02579 -29.61822 -29.51219 -28.10297 -26.85738 -24.33977 -23.81528 -23.07354 -21.62912 -19.50381 -18.99414 -18.70612 -17.71784 -17.31238 -16.95118 -16.74678 -16.62501 -16.37152 -16.29892 -15.58022 -15.37204 -14.96364 -14.75869 -14.60047 -14.43400 -14.25984 -13.87782 -13.66389 -13.51312 -13.29896 -13.13675 -12.89141 -12.81744 -12.54904 -12.46969 -12.19800 -11.73817 -11.65549 -11.52422 -11.08345 -10.95213 -10.74223 -9.79763 -9.60737 -8.91316 -8.86815 -8.37699 -6.40115 -0.02137 0.05713 0.52482 0.71746 0.75946 1.18857 1.29330 1.42486 1.58869 2.08556 2.44814 2.55734 2.78848 3.29466 3.37689 3.67629 3.90430 4.06853 4.16483 4.26302 4.30086 4.32629 4.35881 4.47598 4.48722 4.54545 4.66666 4.74546 4.86299 4.93026 4.97528 5.03499 5.13877 5.14710 5.25307 5.26302 5.60659 5.63913 5.84733 5.87534 6.13132 6.24580 6.43838 6.78210 7.04282 8.19511 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.006016 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.255579 B = 4653.092617 C = 5242.149627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.338 6.338 3 C 0.034 3.966 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.055 4.055 7 C -0.079 4.079 8 C 0.090 3.910 9 F -0.150 7.150 10 C -0.159 4.159 11 C -0.063 4.063 12 C -0.140 4.140 13 C -0.062 4.062 14 S -0.141 6.141 15 C -0.144 4.144 16 C -0.194 4.194 17 C 0.048 3.952 18 C -0.466 4.466 19 H 0.056 0.944 20 C 0.050 3.950 21 N -0.852 5.852 22 Si 0.950 3.050 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.249 1.249 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.161 0.839 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 20.095 -5.084 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.253 6.253 3 C -0.011 4.011 4 C -0.188 4.188 5 C -0.170 4.170 6 C -0.056 4.056 7 C -0.086 4.086 8 C 0.069 3.931 9 F -0.128 7.128 10 C -0.180 4.180 11 C -0.082 4.082 12 C -0.164 4.164 13 C -0.175 4.175 14 S 0.103 5.897 15 C -0.312 4.312 16 C -0.214 4.214 17 C 0.045 3.955 18 C -0.496 4.496 19 H 0.074 0.926 20 C -0.163 4.163 21 N -0.479 5.479 22 Si 0.774 3.226 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.173 1.173 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.179 0.821 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.137 18.675 -5.408 20.388 hybrid contribution 1.003 0.466 0.432 1.188 sum -5.133 19.140 -4.975 20.432 Atomic orbital electron populations 1.23188 0.77967 1.04532 1.01550 1.85977 1.22101 1.27656 1.89540 1.19401 0.91672 0.84406 1.05657 1.20973 0.99650 0.91348 1.06879 1.20463 0.92061 0.96711 1.07814 1.18248 0.93721 0.90228 1.03411 1.18668 1.00832 0.94839 0.94254 1.18155 1.00113 0.90435 0.84393 1.91476 1.94126 1.72602 1.54621 1.21442 1.02298 0.91717 1.02555 1.21384 0.95934 1.00312 0.90609 1.21586 0.99239 0.94225 1.01393 1.21844 1.01825 0.97152 0.96707 1.86486 1.61738 1.27616 1.13813 1.23890 1.07291 0.98574 1.01453 1.20701 0.97186 0.91480 1.12019 1.17223 0.90057 0.93033 0.95162 1.19133 0.99745 0.97359 1.33399 0.92561 1.26632 0.94556 0.97783 0.97321 1.69742 1.06663 1.33819 1.37720 0.85695 0.79632 0.78343 0.78881 1.19683 1.19746 1.17266 0.92390 0.92229 0.87148 0.83953 0.85616 0.82131 0.80089 0.81715 0.87787 0.85903 0.88616 0.89314 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.81 113.37 1.11 1.82 16 2 O -0.34 -15.92 9.83 -89.25 -0.88 -16.79 16 3 C 0.03 1.68 6.72 23.11 0.16 1.84 16 4 C -0.17 -7.10 9.01 22.28 0.20 -6.89 16 5 C -0.15 -6.25 8.71 22.65 0.20 -6.06 16 6 C -0.06 -2.51 4.29 -20.09 -0.09 -2.59 16 7 C -0.08 -3.07 5.32 -19.88 -0.11 -3.17 16 8 C 0.09 3.24 7.23 22.58 0.16 3.41 16 9 F -0.15 -6.24 16.65 44.97 0.75 -5.49 16 10 C -0.16 -4.02 10.01 22.31 0.22 -3.79 16 11 C -0.06 -1.19 10.03 22.28 0.22 -0.97 16 12 C -0.14 -3.03 9.36 22.39 0.21 -2.82 16 13 C -0.06 -1.93 6.13 22.85 0.14 -1.79 16 14 S -0.14 -4.14 20.74 -56.49 -1.17 -5.32 16 15 C -0.14 -2.21 9.15 113.37 1.04 -1.17 16 16 C -0.19 -10.22 6.63 22.92 0.15 -10.07 16 17 C 0.05 2.69 5.11 -21.23 -0.11 2.58 16 18 C -0.47 -28.69 9.18 23.39 0.21 -28.48 16 19 H 0.06 3.76 7.89 -2.91 -0.02 3.73 16 20 C 0.05 2.96 5.40 85.23 0.46 3.42 16 21 N -0.85 -50.45 13.93 21.82 0.30 -50.14 16 22 Si 0.95 47.44 24.52 68.60 1.68 49.12 16 23 H -0.27 -13.26 6.71 99.48 0.67 -12.59 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.25 -12.73 6.87 99.48 0.68 -12.05 16 26 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 27 H 0.06 1.68 7.65 -2.39 -0.02 1.66 16 28 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 29 H 0.14 4.79 6.27 -2.91 -0.02 4.77 16 30 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.17 2.25 5.88 -2.91 -0.02 2.24 16 34 H 0.10 1.16 7.75 -2.39 -0.02 1.14 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.09 1.24 7.75 -2.39 -0.02 1.22 16 37 H 0.09 4.89 4.75 -2.91 -0.01 4.88 16 38 H 0.29 15.53 8.30 -92.71 -0.77 14.77 16 Total: -1.00 -76.04 332.80 5.91 -70.13 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.03 Total: 13.25 kcal Atomic # 6 Polarization: -58.94 SS G_CDS: 4.19 Total: -54.75 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.30 Total: -50.14 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.88 Total: -16.79 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.75 Total: -5.49 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.68 Total: 49.12 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.17 Total: -5.32 kcal Total: -76.04 5.91 -70.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243124201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.353 kcal (2) G-P(sol) polarization free energy of solvation -76.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds