Wall clock time and date at job start Fri Apr 10 2020 23:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00515 * 2 1 4 4 H 1.48502 * 109.47159 * 270.00195 * 3 2 1 5 5 H 1.48506 * 109.46959 * 29.99465 * 3 2 1 6 6 H 1.48498 * 109.47362 * 149.99869 * 3 2 1 7 7 C 1.37884 * 119.99553 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99976 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46623 * 179.97438 * 9 7 2 11 11 C 1.46500 * 120.00180 * 270.00169 * 10 9 7 12 12 C 1.50704 * 109.46868 * 271.40352 * 11 10 9 13 13 C 1.34514 * 125.78556 * 89.72173 * 12 11 10 14 14 C 1.41383 * 106.84016 * 179.88661 * 13 12 11 15 15 C 1.34512 * 106.83812 * 0.36986 * 14 13 12 16 16 O 1.34297 * 125.79112 * 270.02305 * 12 11 10 17 17 C 1.34776 * 119.99560 * 90.00580 * 10 9 7 18 18 O 1.21610 * 120.00542 * 3.75276 * 17 10 9 19 19 C 1.47328 * 119.99896 * 183.74788 * 17 10 9 20 20 C 1.37938 * 125.88963 * 161.91628 * 19 17 10 21 21 C 1.39427 * 107.47575 * 179.72184 * 20 19 17 22 22 C 1.38003 * 107.44397 * 0.41422 * 21 20 19 23 23 C 1.47146 * 125.90746 * 179.84054 * 22 21 20 24 24 O 1.21530 * 120.00235 * 359.70084 * 23 22 21 25 25 O 1.34816 * 120.00136 * 179.69190 * 23 22 21 26 26 N 1.36709 * 125.89046 * 341.89093 * 19 17 10 27 27 H 0.97005 * 125.66064 * 359.97438 * 26 19 17 28 28 H 0.96998 * 119.99790 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47073 * 60.00788 * 9 7 2 30 30 H 1.08993 * 109.47676 * 300.00259 * 9 7 2 31 31 H 1.08991 * 109.47137 * 31.40545 * 11 10 9 32 32 H 1.09005 * 109.46834 * 151.41021 * 11 10 9 33 33 H 1.07997 * 126.57803 * 0.02562 * 13 12 11 34 34 H 1.07997 * 126.58412 * 180.16736 * 14 13 12 35 35 H 1.08003 * 125.79033 * 179.75283 * 15 14 13 36 36 H 1.07999 * 126.26383 * 359.95865 * 20 19 17 37 37 H 1.07997 * 126.27717 * 180.25851 * 21 20 19 38 38 H 0.96694 * 117.00112 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6780 -4.1701 -1.2674 12 6 1.7416 -5.2613 -1.7186 13 6 0.6559 -5.0949 -2.4951 14 6 0.0777 -6.3732 -2.6701 15 6 0.8400 -7.2430 -1.9832 16 8 1.8464 -6.5639 -1.4090 17 6 2.6416 -4.1244 1.1686 18 8 2.1961 -3.7082 2.2208 19 6 3.6608 -5.1882 1.1697 20 6 4.4455 -5.5551 2.2432 21 6 5.2675 -6.6001 1.8232 22 6 4.9771 -6.8475 0.4970 23 6 5.6131 -7.8692 -0.3497 24 8 6.4823 -8.5837 0.1094 25 8 5.2314 -8.0128 -1.6347 26 7 3.9916 -5.9823 0.1072 27 1 3.5932 -5.9399 -0.7762 28 1 -0.4850 0.8400 -0.0004 29 1 0.6240 -2.5575 -0.8881 30 1 0.6245 -2.5563 0.8919 31 1 2.7089 -3.3832 -2.0209 32 1 3.6778 -4.5825 -1.1313 33 1 0.2964 -4.1639 -2.9077 34 1 -0.8081 -6.6061 -3.2423 35 1 0.6711 -8.3069 -1.9063 36 1 4.4242 -5.1161 3.2297 37 1 5.9991 -7.1190 2.4247 38 1 5.6777 -8.6975 -2.1513 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:42:25 Heat of formation + Delta-G solvation = -57.179222 kcal Electronic energy + Delta-G solvation = -26903.984282 eV Core-core repulsion = 22907.492985 eV Total energy + Delta-G solvation = -3996.491297 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.109 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -43.79614 -42.72347 -40.97374 -40.04220 -37.30303 -37.15070 -34.96094 -34.07674 -32.63230 -31.55313 -31.30228 -29.29245 -27.18167 -26.09387 -24.66177 -23.04732 -22.54817 -21.70909 -21.68213 -20.85828 -19.46123 -18.95746 -18.81053 -18.16960 -17.97185 -17.35706 -16.97946 -16.88716 -16.38024 -16.26827 -15.53850 -15.44547 -15.09846 -14.76334 -14.48148 -14.22272 -14.04642 -13.89784 -13.84796 -13.80184 -13.67186 -13.34444 -13.05922 -12.77158 -12.67655 -12.56073 -12.26729 -12.03592 -11.80745 -11.16536 -10.93832 -10.64435 -10.25291 -9.93215 -9.61001 -9.48903 -8.24286 -6.38738 -0.24230 0.56663 0.92900 1.39411 1.42364 1.46334 1.52556 1.61724 1.81749 1.94879 2.01192 2.21275 2.32284 2.41098 3.06940 3.28148 3.47431 3.79691 3.93126 4.05970 4.10275 4.25493 4.31840 4.33972 4.70763 4.78655 4.83836 4.96913 5.03223 5.07237 5.15844 5.30730 5.37857 5.49027 5.52713 5.62599 5.71978 5.93513 5.99729 6.14262 6.36446 6.68480 6.87494 7.01998 7.32480 8.83607 Molecular weight = 318.11amu Principal moments of inertia in cm(-1) A = 0.013297 B = 0.004634 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.295921 B = 6040.825819 C = 7301.856700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.265 3.735 10 N -0.590 5.590 11 C 0.171 3.829 12 C -0.078 4.078 13 C -0.182 4.182 14 C -0.223 4.223 15 C -0.021 4.021 16 O -0.195 6.195 17 C 0.571 3.429 18 O -0.561 6.561 19 C -0.010 4.010 20 C -0.132 4.132 21 C -0.103 4.103 22 C -0.024 4.024 23 C 0.568 3.432 24 O -0.524 6.524 25 O -0.507 6.507 26 N -0.501 5.501 27 H 0.433 0.567 28 H 0.268 0.732 29 H 0.033 0.967 30 H 0.005 0.995 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.244 0.756 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -17.410 -8.091 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.076 0.924 9 C 0.145 3.855 10 N -0.320 5.320 11 C 0.047 3.953 12 C -0.128 4.128 13 C -0.202 4.202 14 C -0.242 4.242 15 C -0.088 4.088 16 O -0.092 6.092 17 C 0.360 3.640 18 O -0.440 6.440 19 C -0.129 4.129 20 C -0.158 4.158 21 C -0.129 4.129 22 C -0.139 4.139 23 C 0.412 3.588 24 O -0.413 6.413 25 O -0.322 6.322 26 N -0.109 5.109 27 H 0.284 0.716 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.023 0.977 31 H 0.151 0.849 32 H 0.121 0.879 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.260 0.740 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 7.288 -17.062 -7.262 19.924 hybrid contribution -0.278 0.805 -0.699 1.102 sum 7.011 -16.257 -7.962 19.412 Atomic orbital electron populations 1.70043 1.07527 1.28286 1.50493 1.25786 0.95708 1.02838 0.94186 0.85425 0.78316 0.78361 0.78787 1.18814 1.20826 1.19717 1.21659 0.93478 0.91449 1.51982 0.92358 1.18890 0.87406 0.82576 0.96663 1.48229 1.45197 1.34004 1.04590 1.20463 0.94385 0.92750 0.87683 1.22861 1.02800 0.83028 1.04097 1.21933 0.95982 1.00331 1.01946 1.22183 1.04072 0.91834 1.06089 1.24869 0.87464 0.99670 0.96818 1.83825 1.46260 1.18549 1.60556 1.17711 0.81075 0.81234 0.84009 1.90775 1.58552 1.62464 1.32162 1.20670 1.03151 0.98785 0.90310 1.21473 0.96950 0.98883 0.98511 1.21526 1.01394 0.98041 0.91914 1.19767 0.99481 0.98889 0.95798 1.19296 0.78799 0.80256 0.80438 1.90933 1.31076 1.44590 1.74728 1.84556 1.64935 1.59943 1.22803 1.43288 1.28821 1.25878 1.12887 0.71616 0.92305 0.94854 0.97738 0.84881 0.87923 0.83346 0.80877 0.74043 0.81887 0.80088 0.69648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 13.29 21.45 0.28 -53.68 16 2 C 0.01 0.81 5.46 84.66 0.46 1.27 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -30.22 9.39 25.60 0.24 -29.98 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.26 13.78 5.20 85.63 0.44 14.22 16 10 N -0.59 -25.09 2.44 -834.51 -2.04 -27.12 16 11 C 0.17 5.44 5.48 85.63 0.47 5.91 16 12 C -0.08 -2.27 6.46 24.83 0.16 -2.11 16 13 C -0.18 -5.11 10.81 22.19 0.24 -4.87 16 14 C -0.22 -4.91 10.91 22.19 0.24 -4.67 16 15 C -0.02 -0.42 12.09 66.97 0.81 0.39 16 16 O -0.19 -5.03 8.47 -2.45 -0.02 -5.05 16 17 C 0.57 25.06 7.64 86.64 0.66 25.72 16 18 O -0.56 -29.43 16.48 -4.06 -0.07 -29.49 16 19 C -0.01 -0.34 6.56 40.71 0.27 -0.08 16 20 C -0.13 -3.96 10.65 22.49 0.24 -3.72 16 21 C -0.10 -2.56 10.61 22.50 0.24 -2.32 16 22 C -0.02 -0.61 7.07 40.65 0.29 -0.32 16 23 C 0.57 12.30 8.33 70.16 0.58 12.88 16 24 O -0.52 -13.30 17.66 19.74 0.35 -12.95 16 25 O -0.51 -7.51 13.44 -57.28 -0.77 -8.28 16 26 N -0.50 -14.06 4.60 -172.60 -0.79 -14.85 16 27 H 0.43 11.45 2.92 -92.70 -0.27 11.17 16 28 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.03 1.73 8.07 -2.39 -0.02 1.72 16 30 H 0.00 0.27 7.37 -2.39 -0.02 0.26 16 31 H 0.13 4.01 8.08 -2.39 -0.02 3.99 16 32 H 0.10 2.88 4.58 -2.38 -0.01 2.87 16 33 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.24 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.16 4.64 8.06 -2.91 -0.02 4.61 16 37 H 0.18 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.44 1.90 9.11 -74.06 -0.67 1.22 16 Total: -1.00 -75.85 340.42 4.52 -71.33 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.20 Total: 22.32 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.35 Total: 12.33 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -2.54 Total: -95.65 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -0.51 Total: -55.77 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -75.85 4.52 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.155 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds