Wall clock time and date at job start Fri Apr 10 2020 23:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47344 * 270.00575 * 3 2 1 5 5 H 1.48507 * 109.46989 * 30.00148 * 3 2 1 6 6 H 1.48500 * 109.47285 * 150.00153 * 3 2 1 7 7 C 1.38812 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00090 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99699 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46900 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47164 * 60.00014 * 11 10 9 13 13 O 1.42903 * 109.47171 * 299.99748 * 11 10 9 14 14 C 1.53003 * 109.47376 * 180.02562 * 11 10 9 15 15 N 1.46494 * 109.47283 * 185.00021 * 14 11 10 16 16 C 1.34779 * 119.99921 * 179.97438 * 15 14 11 17 17 O 1.21563 * 120.00126 * 0.02562 * 16 15 14 18 18 C 1.47734 * 119.99754 * 179.97438 * 16 15 14 19 19 C 1.39628 * 120.10200 * 359.72097 * 18 16 15 20 20 C 1.38074 * 119.89675 * 179.79135 * 19 18 16 21 21 F 1.35095 * 119.94903 * 180.23552 * 20 19 18 22 22 C 1.38791 * 120.10259 * 0.46476 * 20 19 18 23 23 F 1.35098 * 119.89781 * 179.76564 * 22 20 19 24 24 C 1.38786 * 120.19838 * 359.79411 * 22 20 19 25 25 F 1.35099 * 119.94641 * 179.97438 * 24 22 20 26 26 C 1.38070 * 120.10246 * 359.97077 * 24 22 20 27 27 H 0.97001 * 119.99921 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99991 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47200 * 60.00130 * 10 9 7 30 30 H 1.08997 * 109.47487 * 300.00184 * 10 9 7 31 31 H 0.96700 * 114.00311 * 300.00378 * 13 11 10 32 32 H 1.09005 * 109.46682 * 304.99749 * 14 11 10 33 33 H 1.08999 * 109.47221 * 64.99915 * 14 11 10 34 34 H 0.96999 * 120.00388 * 359.97438 * 15 14 11 35 35 H 1.08000 * 120.05244 * 0.02871 * 19 18 16 36 36 H 1.08005 * 120.05201 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0638 -4.8197 -0.0021 12 1 0.4368 -4.7613 -0.8918 13 8 0.2428 -4.7448 1.1651 14 6 1.8288 -6.1448 -0.0026 15 7 0.8814 -7.2555 -0.1234 16 6 1.3315 -8.5257 -0.1458 17 8 2.5236 -8.7497 -0.0655 18 6 0.3760 -9.6459 -0.2671 19 6 -0.9943 -9.3914 -0.3526 20 6 -1.8832 -10.4414 -0.4701 21 9 -3.2088 -10.1961 -0.5577 22 6 -1.4174 -11.7486 -0.4936 23 9 -2.2913 -12.7730 -0.6039 24 6 -0.0567 -12.0065 -0.4034 25 9 0.3911 -13.2809 -0.4262 26 6 0.8400 -10.9627 -0.2905 27 1 -0.4850 0.8401 0.0004 28 1 0.3556 -2.3881 -0.0005 29 1 2.6854 -3.7149 0.8878 30 1 2.6841 -3.7141 -0.8921 31 1 0.7352 -4.7907 1.9961 32 1 2.5209 -6.1643 -0.8445 33 1 2.3866 -6.2426 0.9287 34 1 -0.0699 -7.0769 -0.1871 35 1 -1.3579 -8.3747 -0.3307 36 1 1.8987 -11.1644 -0.2208 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699066350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:23 Heat of formation + Delta-G solvation = -203.174823 kcal Electronic energy + Delta-G solvation = -25236.993297 eV Core-core repulsion = 20692.314415 eV Total energy + Delta-G solvation = -4544.678882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.98629 -50.35640 -49.66727 -41.44774 -39.47981 -38.71677 -36.09041 -35.45543 -33.20680 -32.35581 -31.83120 -30.38516 -27.29181 -25.49111 -24.62314 -24.04299 -22.75134 -21.84723 -20.01659 -19.21285 -19.16632 -18.88900 -18.04159 -17.99672 -17.60180 -17.19253 -16.97996 -16.64337 -16.44373 -16.38399 -16.16429 -16.05255 -15.91116 -15.60559 -15.47174 -15.01430 -14.71970 -14.21291 -14.02100 -13.86475 -13.82654 -13.31465 -12.99002 -12.92839 -12.91379 -12.74044 -12.14776 -11.94760 -11.78098 -11.44175 -10.98061 -10.87764 -10.37548 -10.23337 -10.09602 -8.98645 -7.93633 -5.22469 -0.94391 -0.48413 1.26590 1.49352 1.50474 1.58892 1.77866 2.11559 2.23694 2.57127 2.86272 2.91263 3.13665 3.22485 3.38810 3.51590 3.61134 3.65707 4.06086 4.09155 4.17081 4.24087 4.41012 4.43505 4.52294 4.66015 4.70778 4.77897 4.98060 5.18541 5.25901 5.29449 5.50388 6.27965 6.34136 6.83472 6.99346 7.35533 8.11960 8.34049 9.29534 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.029355 B = 0.002161 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.597187 B =12954.554395 C =13778.188160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.120 3.880 11 C 0.106 3.894 12 H 0.105 0.895 13 O -0.563 6.563 14 C 0.101 3.899 15 N -0.701 5.701 16 C 0.564 3.436 17 O -0.561 6.561 18 C -0.083 4.083 19 C -0.083 4.083 20 C 0.095 3.905 21 F -0.118 7.118 22 C 0.051 3.949 23 F -0.121 7.121 24 C 0.093 3.907 25 F -0.120 7.120 26 C -0.068 4.068 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.032 0.968 30 H 0.035 0.965 31 H 0.386 0.614 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.416 0.584 35 H 0.184 0.816 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -25.539 -0.430 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.384 5.384 10 C -0.007 4.007 11 C 0.046 3.954 12 H 0.122 0.878 13 O -0.370 6.370 14 C -0.024 4.024 15 N -0.353 5.353 16 C 0.351 3.649 17 O -0.441 6.441 18 C -0.086 4.086 19 C -0.102 4.102 20 C 0.074 3.926 21 F -0.097 7.097 22 C 0.030 3.970 23 F -0.099 7.099 24 C 0.072 3.928 25 F -0.098 7.098 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.235 0.765 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.254 0.746 35 H 0.201 0.799 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.269 -25.604 -0.812 25.648 hybrid contribution -0.389 0.609 0.256 0.767 sum -1.658 -24.994 -0.555 25.055 Atomic orbital electron populations 1.69825 1.06606 1.26045 1.59353 1.25568 0.96372 1.01126 1.03742 0.85160 0.77722 0.79571 0.77412 1.21443 1.22339 1.19392 1.19635 0.91513 0.85358 1.41280 0.90555 1.42416 1.05830 1.00762 1.89347 1.21424 0.94309 0.85723 0.99263 1.22130 0.92332 0.91207 0.89735 0.87758 1.86560 1.37586 1.96412 1.16432 1.21971 0.91934 0.84569 1.03880 1.45711 1.11998 1.04689 1.72883 1.17962 0.87412 0.82930 0.76641 1.90828 1.17276 1.84919 1.51072 1.19423 0.92600 0.93160 1.03459 1.21504 0.90811 1.00562 0.97340 1.17121 0.79141 0.91043 1.05287 1.91608 1.29946 1.94613 1.93491 1.17985 0.86745 0.84513 1.07779 1.91568 1.67937 1.57086 1.93331 1.17086 0.89492 0.80496 1.05711 1.91590 1.89189 1.35181 1.93830 1.21274 1.01870 0.89412 0.96263 0.94036 0.79018 0.95047 0.94743 0.76521 0.89748 0.90075 0.74568 0.79911 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.37 13.06 21.65 0.28 -58.08 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.25 -13.27 9.99 84.03 0.84 -12.43 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -35.47 5.49 -343.46 -1.89 -37.36 16 10 C 0.12 4.13 5.92 86.38 0.51 4.64 16 11 C 0.11 2.66 3.09 30.60 0.09 2.75 16 12 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 13 O -0.56 -14.86 13.03 -148.98 -1.94 -16.80 16 14 C 0.10 1.97 5.31 86.38 0.46 2.43 16 15 N -0.70 -11.25 5.45 -466.08 -2.54 -13.80 16 16 C 0.56 10.28 7.77 86.75 0.67 10.95 16 17 O -0.56 -14.25 16.34 -3.91 -0.06 -14.32 16 18 C -0.08 -1.13 5.87 -20.09 -0.12 -1.25 16 19 C -0.08 -0.89 9.51 22.57 0.21 -0.68 16 20 C 0.09 1.30 7.29 22.36 0.16 1.46 16 21 F -0.12 -1.89 17.17 44.97 0.77 -1.12 16 22 C 0.05 0.80 7.32 22.53 0.16 0.96 16 23 F -0.12 -2.23 17.08 44.97 0.77 -1.46 16 24 C 0.09 1.37 7.29 22.36 0.16 1.53 16 25 F -0.12 -2.00 17.17 44.97 0.77 -1.22 16 26 C -0.07 -0.94 9.57 22.57 0.22 -0.72 16 27 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.38 19.65 7.54 -92.71 -0.70 18.95 16 29 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.39 8.24 9.05 -74.06 -0.67 7.57 16 32 H 0.08 1.69 8.14 -2.38 -0.02 1.68 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.42 5.04 6.50 -92.71 -0.60 4.43 16 35 H 0.18 1.12 6.40 -2.91 -0.02 1.10 16 36 H 0.17 2.24 7.65 -2.91 -0.02 2.22 16 Total: -1.00 -68.92 334.10 1.26 -67.67 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.78 Total: 23.46 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 3.85 Total: 5.86 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -4.15 Total: -109.24 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -2.00 Total: -31.11 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 2.31 Total: -3.81 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.92 1.26 -67.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699066350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.508 kcal (2) G-P(sol) polarization free energy of solvation -68.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds