Wall clock time and date at job start Fri Apr 10 2020 23:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.08999 * 109.50660 * 34.79671 * 14 13 11 16 16 C 1.53120 * 109.50058 * 274.71971 * 14 13 11 17 17 C 1.53117 * 109.15865 * 182.40514 * 16 14 13 18 18 C 1.53039 * 109.28031 * 57.65796 * 17 16 14 19 19 N 1.46844 * 109.51841 * 300.81797 * 18 17 16 20 20 C 1.46904 * 110.99983 * 185.83573 * 19 18 17 21 21 C 1.50700 * 109.47533 * 293.95770 * 20 19 18 22 22 C 1.31155 * 120.00343 * 124.99482 * 21 20 19 23 23 Cl 1.73597 * 120.00227 * 180.02562 * 22 21 20 24 24 C 1.46845 * 111.19862 * 61.74441 * 19 18 17 25 25 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 27 27 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.08997 * 109.52219 * 302.30727 * 16 14 13 30 30 H 1.08999 * 109.52463 * 62.43826 * 16 14 13 31 31 H 1.09007 * 109.50236 * 177.59478 * 17 16 14 32 32 H 1.08995 * 109.50859 * 297.67505 * 17 16 14 33 33 H 1.08998 * 109.46277 * 60.83292 * 18 17 16 34 34 H 1.08995 * 109.46397 * 180.80231 * 18 17 16 35 35 H 1.09003 * 109.47022 * 53.95555 * 20 19 18 36 36 H 1.08993 * 109.47625 * 173.95215 * 20 19 18 37 37 H 1.08005 * 119.99553 * 305.00148 * 21 20 19 38 38 H 1.08010 * 119.99966 * 359.97438 * 22 21 20 39 39 H 1.09009 * 109.46449 * 178.24043 * 24 19 18 40 40 H 1.09003 * 109.46662 * 58.27061 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.4151 -7.7585 -0.5937 16 6 2.0346 -8.1558 1.4325 17 6 1.5554 -9.6100 1.4232 18 6 2.6246 -10.4902 0.7720 19 7 2.8713 -10.0286 -0.6000 20 6 3.7905 -10.9337 -1.3027 21 6 5.1495 -10.8726 -0.6541 22 6 5.7229 -11.9726 -0.2282 23 17 7.2880 -11.9021 0.5196 24 6 3.3774 -8.6502 -0.6135 25 1 -0.4849 0.8400 -0.0004 26 1 3.1246 -3.7313 0.8905 27 1 3.1246 -3.7313 -0.8894 28 1 3.8011 -6.1834 0.0015 29 1 2.9409 -8.0747 2.0325 30 1 1.2587 -7.5183 1.8566 31 1 1.3838 -9.9432 2.4468 32 1 0.6276 -9.6839 0.8561 33 1 3.5477 -10.4265 1.3481 34 1 2.2805 -11.5242 0.7509 35 1 3.4081 -11.9531 -1.2496 36 1 3.8722 -10.6303 -2.3464 37 1 5.6511 -9.9230 -0.5400 38 1 5.2210 -12.9222 -0.3419 39 1 3.5799 -8.3476 -1.6410 40 1 4.2970 -8.5951 -0.0309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713058529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:38 Heat of formation + Delta-G solvation = -30.847442 kcal Electronic energy + Delta-G solvation = -21571.939436 eV Core-core repulsion = 18152.743087 eV Total energy + Delta-G solvation = -3419.196350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.11382 -38.69428 -37.13370 -35.49889 -33.71239 -32.42652 -31.93544 -30.51570 -28.28457 -26.71998 -25.48378 -23.44487 -22.94837 -21.04537 -20.30648 -19.62943 -17.84864 -17.06113 -16.36228 -16.06619 -15.59498 -15.16261 -15.02096 -14.86746 -14.80308 -14.40550 -13.99381 -13.60120 -13.45030 -13.15056 -12.89483 -12.84760 -12.54064 -12.42515 -12.07415 -11.91443 -11.53723 -11.28764 -11.12068 -11.07284 -11.01831 -10.94881 -10.77280 -10.68871 -9.80247 -9.62107 -9.37279 -9.07634 -8.89276 -8.75795 -8.22742 -6.49547 -6.21684 -3.91970 1.32604 1.84093 2.95541 3.10168 3.21584 3.26118 3.31040 3.51310 3.86371 4.20456 4.27444 4.48054 4.59718 4.62887 4.74615 4.82218 5.02091 5.08183 5.13564 5.15770 5.23425 5.27068 5.41892 5.45549 5.58096 5.61789 5.65494 5.68473 5.80234 5.89637 5.91717 6.13874 6.14955 6.21048 6.50642 6.63190 6.75428 7.60031 7.71500 8.35569 8.62863 9.23818 10.85792 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.002234 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.681496 B =12528.648293 C =13334.735057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.736 5.736 14 C 0.151 3.849 15 H 0.097 0.903 16 C -0.133 4.133 17 C -0.114 4.114 18 C 0.052 3.948 19 N -0.523 5.523 20 C 0.089 3.911 21 C -0.181 4.181 22 C -0.097 4.097 23 Cl -0.097 7.097 24 C 0.047 3.953 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.396 0.604 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.083 0.917 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.835 -25.888 -0.122 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.390 5.390 14 C 0.045 3.955 15 H 0.115 0.885 16 C -0.172 4.172 17 C -0.153 4.153 18 C -0.075 4.075 19 N -0.246 5.246 20 C -0.039 4.039 21 C -0.202 4.202 22 C -0.143 4.143 23 Cl -0.069 7.069 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.101 0.899 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.314 -26.101 -0.311 27.715 hybrid contribution 3.457 1.391 0.523 3.763 sum 12.771 -24.710 0.211 27.816 Atomic orbital electron populations 1.70027 1.05939 1.27338 1.46964 1.25000 0.95034 0.99044 0.94571 0.86116 0.79572 0.81894 0.77899 1.19640 1.20566 1.20570 1.22907 0.94928 0.91661 1.58792 0.90905 1.85402 1.04919 0.96317 1.96703 1.23535 1.06565 0.95430 1.04881 1.20287 0.86549 0.86186 0.74943 1.90704 1.15298 1.85511 1.47298 1.46007 1.09815 1.05254 1.77898 1.20803 0.97864 0.80361 0.96441 0.88489 1.22004 1.01882 0.96435 0.96882 1.21545 0.98927 0.94252 1.00560 1.22185 0.98279 0.99188 0.87887 1.62128 1.44064 1.01513 1.16871 1.21353 0.86020 0.98183 0.98383 1.24076 0.98724 0.98675 0.98751 1.24520 0.88284 1.00539 1.00913 1.98386 1.28439 1.98872 1.81169 1.22335 0.96056 0.88150 1.01578 0.92240 0.89291 0.89251 0.77072 0.92232 0.90635 0.91116 0.90615 0.94446 0.90586 0.89598 0.88683 0.85900 0.83614 0.89870 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.80 7.82 -10.98 -0.09 9.72 16 12 O -0.51 -11.52 15.53 5.55 0.09 -11.44 16 13 N -0.74 -9.59 5.08 -53.73 -0.27 -9.86 16 14 C 0.15 1.77 2.62 -67.85 -0.18 1.59 16 15 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 16 C -0.13 -1.49 5.58 -26.61 -0.15 -1.64 16 17 C -0.11 -1.03 6.09 -26.65 -0.16 -1.19 16 18 C 0.05 0.39 5.14 -3.83 -0.02 0.37 16 19 N -0.52 -4.12 4.86 -236.11 -1.15 -5.27 16 20 C 0.09 0.51 5.82 -4.97 -0.03 0.48 16 21 C -0.18 -1.07 7.56 -36.07 -0.27 -1.34 16 22 C -0.10 -0.55 10.43 28.97 0.30 -0.25 16 23 Cl -0.10 -0.71 29.10 -51.86 -1.51 -2.22 16 24 C 0.05 0.41 4.44 -3.83 -0.02 0.39 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 27 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 28 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.29 7.47 -51.93 -0.39 -0.10 16 34 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.09 0.39 7.72 -51.93 -0.40 -0.01 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.12 0.81 6.87 -52.48 -0.36 0.45 16 38 H 0.15 0.57 7.84 -52.48 -0.41 0.16 16 39 H 0.08 0.70 8.12 -51.92 -0.42 0.28 16 40 H 0.04 0.33 6.65 -51.93 -0.35 -0.02 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -33.56 357.90 -10.14 -43.70 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.99 Total: 0.23 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -0.19 Total: -7.65 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.69 Total: -40.56 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.51 Total: -2.22 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.56 -10.14 -43.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713058529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.850 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds