Wall clock time and date at job start Fri Apr 10 2020 23:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47081 * 299.99438 * 3 2 1 6 6 H 1.48496 * 109.47496 * 59.99848 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.08999 * 109.50660 * 34.79671 * 14 13 11 16 16 C 1.53120 * 109.50058 * 274.71971 * 14 13 11 17 17 C 1.53117 * 109.15865 * 182.40514 * 16 14 13 18 18 C 1.53039 * 109.28031 * 57.65796 * 17 16 14 19 19 N 1.46844 * 109.51841 * 300.81797 * 18 17 16 20 20 C 1.46904 * 110.99983 * 185.83573 * 19 18 17 21 21 C 1.50700 * 109.47533 * 293.95770 * 20 19 18 22 22 C 1.31155 * 120.00343 * 124.99482 * 21 20 19 23 23 Cl 1.73597 * 120.00227 * 180.02562 * 22 21 20 24 24 C 1.46845 * 111.19862 * 61.74441 * 19 18 17 25 25 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 27 27 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.08997 * 109.52219 * 302.30727 * 16 14 13 30 30 H 1.08999 * 109.52463 * 62.43826 * 16 14 13 31 31 H 1.09007 * 109.50236 * 177.59478 * 17 16 14 32 32 H 1.08995 * 109.50859 * 297.67505 * 17 16 14 33 33 H 1.08998 * 109.46277 * 60.83292 * 18 17 16 34 34 H 1.08995 * 109.46397 * 180.80231 * 18 17 16 35 35 H 1.09003 * 109.47022 * 53.95555 * 20 19 18 36 36 H 1.08993 * 109.47625 * 173.95215 * 20 19 18 37 37 H 1.08005 * 119.99553 * 305.00148 * 21 20 19 38 38 H 1.08010 * 119.99966 * 359.97438 * 22 21 20 39 39 H 1.09009 * 109.46449 * 178.24043 * 24 19 18 40 40 H 1.09003 * 109.46662 * 58.27061 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.4151 -7.7585 -0.5937 16 6 2.0346 -8.1558 1.4325 17 6 1.5554 -9.6100 1.4232 18 6 2.6246 -10.4902 0.7720 19 7 2.8713 -10.0286 -0.6000 20 6 3.7905 -10.9337 -1.3027 21 6 5.1495 -10.8726 -0.6541 22 6 5.7229 -11.9726 -0.2282 23 17 7.2880 -11.9021 0.5196 24 6 3.3774 -8.6502 -0.6135 25 1 -0.4849 0.8400 -0.0004 26 1 3.1246 -3.7313 0.8905 27 1 3.1246 -3.7313 -0.8894 28 1 3.8011 -6.1834 0.0015 29 1 2.9409 -8.0747 2.0325 30 1 1.2587 -7.5183 1.8566 31 1 1.3838 -9.9432 2.4468 32 1 0.6276 -9.6839 0.8561 33 1 3.5477 -10.4265 1.3481 34 1 2.2805 -11.5242 0.7509 35 1 3.4081 -11.9531 -1.2496 36 1 3.8722 -10.6303 -2.3464 37 1 5.6511 -9.9230 -0.5400 38 1 5.2210 -12.9222 -0.3419 39 1 3.5799 -8.3476 -1.6410 40 1 4.2970 -8.5951 -0.0309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713058529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:35 Heat of formation + Delta-G solvation = -54.390884 kcal Electronic energy + Delta-G solvation = -21572.960356 eV Core-core repulsion = 18152.743087 eV Total energy + Delta-G solvation = -3420.217270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 318.091 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13357 -39.78923 -37.65884 -36.38677 -34.67576 -34.57678 -32.56659 -31.74775 -29.54892 -27.65513 -27.29495 -24.13690 -23.83554 -21.70203 -21.57562 -20.41869 -19.73914 -17.91570 -17.80560 -16.89381 -16.85193 -16.46913 -16.25545 -15.91263 -15.80156 -15.59234 -15.06672 -14.71560 -14.60230 -14.38350 -14.11335 -13.60939 -13.49442 -13.36348 -13.16022 -12.93578 -12.91581 -12.61735 -12.49038 -12.32121 -11.90773 -11.84141 -11.76057 -11.70824 -11.56599 -11.15918 -10.90745 -10.26991 -10.12983 -10.04373 -9.35137 -8.66601 -8.34873 -6.12749 0.89873 1.26769 1.39624 1.41358 1.46845 1.57992 1.61977 2.18969 2.27565 2.99289 3.04048 3.32947 3.68056 3.81924 3.89189 3.96352 4.04746 4.13538 4.20431 4.30188 4.32599 4.46031 4.50860 4.56793 4.62274 4.71391 4.85913 4.88952 4.93397 5.06536 5.21344 5.26327 5.29458 5.33449 5.42116 5.47907 6.00789 6.08308 6.20047 6.51196 7.06552 7.25974 8.74599 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.022691 B = 0.002234 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.681496 B =12528.648293 C =13334.735057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.710 5.710 14 C 0.150 3.850 15 H 0.066 0.934 16 C -0.130 4.130 17 C -0.111 4.111 18 C 0.057 3.943 19 N -0.535 5.535 20 C 0.093 3.907 21 C -0.182 4.182 22 C -0.095 4.095 23 Cl -0.115 7.115 24 C 0.058 3.942 25 H 0.271 0.729 26 H 0.109 0.891 27 H 0.110 0.890 28 H 0.415 0.585 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.167 0.833 39 H 0.088 0.912 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 -27.089 -0.269 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.363 5.363 14 C 0.045 3.955 15 H 0.085 0.915 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.070 4.070 19 N -0.258 5.258 20 C -0.035 4.035 21 C -0.203 4.203 22 C -0.140 4.140 23 Cl -0.086 7.086 24 C -0.071 4.071 25 H 0.080 0.920 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.252 0.748 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.184 0.816 39 H 0.106 0.894 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.023 -27.346 -0.461 29.876 hybrid contribution 2.646 1.624 0.563 3.155 sum 14.670 -25.722 0.102 29.611 Atomic orbital electron populations 1.70191 1.07970 1.28539 1.48093 1.26144 0.95986 1.03361 0.93792 0.84894 0.78594 0.76308 0.78070 1.18027 1.19923 1.19952 1.23231 0.95327 0.91978 1.58703 0.89923 1.85594 1.10586 0.99252 1.97039 1.23372 1.03530 0.94354 1.06774 1.20039 0.86251 0.86589 0.74887 1.90695 1.17395 1.86013 1.49939 1.45735 1.10197 1.04847 1.75565 1.20891 0.97902 0.79913 0.96773 0.91542 1.21947 1.01281 0.97410 0.96231 1.21528 0.98961 0.93022 1.01459 1.22156 0.97715 0.99538 0.87582 1.62102 1.45082 1.01330 1.17298 1.21392 0.85405 0.98479 0.98202 1.24008 0.98788 0.98484 0.98986 1.24773 0.87397 1.01467 1.00326 1.98388 1.29830 1.98924 1.81496 1.22191 0.95083 0.88090 1.01722 0.92003 0.87311 0.87148 0.74848 0.91036 0.94099 0.89855 0.91948 0.94019 0.88823 0.87895 0.88177 0.86597 0.81578 0.89362 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.21 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.70 29.55 68.60 2.03 45.72 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.15 9.50 67.96 0.65 -30.50 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 10 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 11 C 0.54 19.77 7.82 87.66 0.69 20.46 16 12 O -0.56 -26.26 15.53 -3.04 -0.05 -26.30 16 13 N -0.71 -17.74 5.08 -442.28 -2.25 -19.99 16 14 C 0.15 3.43 2.62 45.04 0.12 3.55 16 15 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 16 C -0.13 -2.86 5.58 30.67 0.17 -2.68 16 17 C -0.11 -1.88 6.09 30.65 0.19 -1.69 16 18 C 0.06 0.72 5.14 86.33 0.44 1.16 16 19 N -0.54 -7.16 4.86 -900.93 -4.38 -11.53 16 20 C 0.09 0.77 5.82 85.56 0.50 1.27 16 21 C -0.18 -1.61 7.56 25.49 0.19 -1.41 16 22 C -0.09 -0.81 10.43 67.63 0.71 -0.10 16 23 Cl -0.11 -1.47 29.10 -2.72 -0.08 -1.55 16 24 C 0.06 0.87 4.44 86.33 0.38 1.26 16 25 H 0.27 15.46 8.31 -92.72 -0.77 14.69 16 26 H 0.11 3.86 8.14 -2.40 -0.02 3.85 16 27 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 28 H 0.41 7.36 8.60 -92.71 -0.80 6.56 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 0.51 7.47 -2.39 -0.02 0.49 16 34 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 35 H 0.10 0.54 7.72 -2.39 -0.02 0.53 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.12 1.21 6.87 -2.91 -0.02 1.19 16 38 H 0.17 0.71 7.84 -2.91 -0.02 0.69 16 39 H 0.09 1.28 8.12 -2.38 -0.02 1.26 16 40 H 0.06 0.72 6.65 -2.39 -0.02 0.70 16 Total: -1.00 -75.91 357.90 -0.42 -76.33 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.24 Total: 15.09 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.93 Total: -12.22 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -6.34 Total: -87.45 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -75.91 -0.42 -76.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713058529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.943 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds