Wall clock time and date at job start Fri Apr 10 2020 23:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38309 * 119.99889 * 180.02562 * 12 11 10 14 14 N 1.33087 * 118.63412 * 359.72993 * 13 12 11 15 15 C 1.32250 * 121.45500 * 179.75032 * 14 13 12 16 16 O 1.35273 * 120.81827 * 180.28547 * 15 14 13 17 17 C 1.41529 * 118.35397 * 0.51018 * 15 14 13 18 18 C 1.39976 * 122.02426 * 179.75492 * 17 15 14 19 19 C 1.36376 * 119.52282 * 180.02562 * 18 17 15 20 20 N 1.48021 * 119.55123 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00217 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99682 * 0.02562 * 20 19 18 23 23 C 1.39220 * 120.90387 * 0.02562 * 19 18 17 24 24 C 1.36315 * 121.02073 * 359.97438 * 23 19 18 25 25 C 1.40182 * 119.59197 * 0.02562 * 24 23 19 26 26 N 1.31894 * 118.63598 * 180.02562 * 13 12 11 27 27 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 35 35 H 0.96700 * 113.99834 * 270.22823 * 16 15 14 36 36 H 1.08004 * 120.24120 * 0.02562 * 18 17 15 37 37 H 1.07996 * 119.48843 * 179.97438 * 23 19 18 38 38 H 1.07996 * 120.20319 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0399 -4.0178 0.0009 13 6 7.3997 -4.2705 0.0005 14 7 8.2401 -3.2387 -0.0060 15 6 9.5507 -3.4160 -0.0018 16 8 10.3933 -2.3577 -0.0027 17 6 10.0497 -4.7404 -0.0012 18 6 11.4220 -5.0165 -0.0019 19 6 11.8467 -6.3125 -0.0017 20 7 13.2977 -6.6052 -0.0031 21 8 13.6861 -7.7595 -0.0034 22 8 14.1032 -5.6916 -0.0038 23 6 10.9343 -7.3640 -0.0014 24 6 9.5915 -7.1289 -0.0007 25 6 9.1199 -5.8088 -0.0008 26 7 7.8096 -5.5241 0.0007 27 1 -0.4849 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6579 -3.1513 -0.8880 31 1 3.6586 -3.1495 0.8919 32 1 5.9142 -2.1238 -0.8908 33 1 5.9156 -2.1217 0.8892 34 1 5.4096 -4.7551 0.0016 35 1 10.6379 -2.0506 -0.8864 36 1 12.1393 -4.2091 -0.0025 37 1 11.2958 -8.3816 -0.0017 38 1 8.8954 -7.9546 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286039656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:42:00 Heat of formation + Delta-G solvation = 27.697164 kcal Electronic energy + Delta-G solvation = -24743.459584 eV Core-core repulsion = 20782.941554 eV Total energy + Delta-G solvation = -3960.518030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.58456 -41.88114 -38.79944 -38.61109 -36.85008 -36.26677 -33.90041 -33.71173 -32.11450 -31.80725 -30.66554 -27.63249 -26.20780 -25.43189 -23.71168 -23.19266 -22.51038 -20.77304 -20.21102 -19.65935 -19.15800 -18.73660 -17.82705 -17.44872 -16.94208 -16.84726 -16.27338 -16.05475 -15.31908 -15.11108 -14.80883 -14.61125 -14.25692 -14.04090 -13.40687 -12.96526 -12.79807 -12.52590 -12.29007 -12.08582 -11.87282 -11.71983 -11.52854 -11.42614 -11.34826 -11.21766 -11.07542 -10.52243 -10.18260 -10.00281 -9.83677 -9.75495 -9.63808 -9.34489 -8.65019 -8.35130 -6.15160 -4.14844 -0.77814 -0.21881 0.60792 1.06641 1.14601 2.21841 2.31205 2.79441 3.22820 3.31253 3.33425 3.37901 3.60590 3.72724 3.91825 4.05123 4.26435 4.35136 4.57407 4.65543 4.96652 5.01849 5.18135 5.23128 5.27749 5.40941 5.41119 5.65806 5.77194 6.03765 6.12005 6.23781 6.36019 6.56084 6.61944 6.68704 7.06010 7.08790 7.21187 7.34091 7.64965 7.81723 8.40092 8.88201 9.46197 10.97928 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.002160 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.620952 B =12958.544319 C =13756.861841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.116 4.116 11 C 0.122 3.878 12 N -0.667 5.667 13 C 0.613 3.387 14 N -0.570 5.570 15 C 0.474 3.526 16 O -0.465 6.465 17 C -0.249 4.249 18 C 0.047 3.953 19 C -0.084 4.084 20 N 0.035 4.965 21 O -0.163 6.163 22 O -0.169 6.169 23 C -0.028 4.028 24 C -0.111 4.111 25 C 0.265 3.735 26 N -0.583 5.583 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.421 0.579 35 H 0.420 0.580 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.962 -12.074 -1.760 26.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.154 4.154 11 C -0.001 4.001 12 N -0.298 5.298 13 C 0.256 3.744 14 N -0.301 5.301 15 C 0.269 3.731 16 O -0.274 6.274 17 C -0.259 4.259 18 C 0.025 3.975 19 C -0.169 4.169 20 N 0.553 4.447 21 O -0.378 6.378 22 O -0.383 6.383 23 C -0.050 4.050 24 C -0.132 4.132 25 C 0.130 3.870 26 N -0.311 5.311 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.283 0.717 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 21.868 -11.446 -1.179 24.710 hybrid contribution 1.341 0.656 -0.426 1.553 sum 23.209 -10.789 -1.605 25.645 Atomic orbital electron populations 1.69909 1.06319 1.27051 1.50620 1.25037 0.94773 0.99265 0.94408 0.86770 0.80370 0.83532 0.78571 1.20231 1.21291 1.18929 1.21062 0.89173 0.94583 1.51480 0.90963 1.19482 0.97432 0.90996 0.96726 1.21760 0.89965 1.01496 1.02174 1.21889 0.96480 0.79152 1.02604 1.44910 1.00638 1.11119 1.73161 1.19120 0.87207 0.83270 0.84844 1.67370 1.03599 1.36390 1.22782 1.19175 0.85630 0.84726 0.83546 1.84624 1.61199 1.46742 1.34865 1.19130 0.94428 0.95055 1.17257 1.20715 0.95165 0.95632 0.85974 1.20629 0.80345 0.95888 1.20044 1.43536 1.03309 1.00585 0.97308 1.94537 1.83787 1.05871 1.53625 1.94546 1.50485 1.39236 1.53985 1.20658 0.91760 0.99521 0.93110 1.20584 0.94331 0.95157 1.03108 1.18751 0.87484 0.93325 0.87403 1.68509 1.15077 1.19059 1.28464 0.92601 0.96227 0.96680 0.91817 0.91776 0.91065 0.91036 0.73976 0.71724 0.81852 0.82330 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 7 C -0.53 -14.21 9.66 -34.44 -0.33 -14.55 16 8 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.30 16 10 C -0.12 -1.96 5.27 -26.73 -0.14 -2.10 16 11 C 0.12 1.71 5.61 -4.04 -0.02 1.69 16 12 N -0.67 -8.30 5.70 -62.34 -0.36 -8.65 16 13 C 0.61 7.75 8.40 -322.95 -2.71 5.04 16 14 N -0.57 -7.02 9.52 -13.62 -0.13 -7.14 16 15 C 0.47 4.60 7.89 -16.12 -0.13 4.47 16 16 O -0.47 -3.23 12.92 -17.51 -0.23 -3.46 16 17 C -0.25 -2.27 5.75 -106.69 -0.61 -2.89 16 18 C 0.05 0.37 9.09 -39.60 -0.36 0.01 16 19 C -0.08 -0.73 6.81 -80.25 -0.55 -1.28 16 20 N 0.04 0.37 4.45 33.81 0.15 0.52 16 21 O -0.16 -1.83 18.40 -29.46 -0.54 -2.37 16 22 O -0.17 -1.91 18.38 -29.46 -0.54 -2.46 16 23 C -0.03 -0.20 9.46 -39.91 -0.38 -0.58 16 24 C -0.11 -0.84 10.01 -39.54 -0.40 -1.24 16 25 C 0.26 2.66 6.61 -84.86 -0.56 2.10 16 26 N -0.58 -6.88 10.46 -12.00 -0.13 -7.01 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.42 4.67 8.58 -40.82 -0.35 4.32 16 35 H 0.42 0.66 9.06 45.56 0.41 1.07 16 36 H 0.16 1.00 7.21 -52.48 -0.38 0.62 16 37 H 0.16 0.83 7.56 -52.49 -0.40 0.44 16 38 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 340.18 15.07 5.13 5.13 Total: -1.00 -33.03 340.18 -10.12 -43.15 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.18 Total: 0.13 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -6.40 Total: -7.84 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.31 Total: -48.49 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -1.31 Total: -8.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.03 -10.12 -43.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286039656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.846 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds