Wall clock time and date at job start Fri Apr 10 2020 23:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48504 * 109.47023 * 269.99745 * 3 2 1 5 5 H 1.48496 * 109.47251 * 30.00188 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99933 * 3 2 1 7 7 C 1.37876 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99652 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00428 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38309 * 119.99889 * 180.02562 * 12 11 10 14 14 N 1.33087 * 118.63412 * 359.72993 * 13 12 11 15 15 C 1.32250 * 121.45500 * 179.75032 * 14 13 12 16 16 O 1.35273 * 120.81827 * 180.28547 * 15 14 13 17 17 C 1.41529 * 118.35397 * 0.51018 * 15 14 13 18 18 C 1.39976 * 122.02426 * 179.75492 * 17 15 14 19 19 C 1.36376 * 119.52282 * 180.02562 * 18 17 15 20 20 N 1.48021 * 119.55123 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00217 * 180.02562 * 20 19 18 22 22 O 1.21799 * 119.99682 * 0.02562 * 20 19 18 23 23 C 1.39220 * 120.90387 * 0.02562 * 19 18 17 24 24 C 1.36315 * 121.02073 * 359.97438 * 23 19 18 25 25 C 1.40182 * 119.59197 * 0.02562 * 24 23 19 26 26 N 1.31894 * 118.63598 * 180.02562 * 13 12 11 27 27 H 0.96996 * 119.99309 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 35 35 H 0.96700 * 113.99834 * 270.22823 * 16 15 14 36 36 H 1.08004 * 120.24120 * 0.02562 * 18 17 15 37 37 H 1.07996 * 119.48843 * 179.97438 * 23 19 18 38 38 H 1.07996 * 120.20319 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6366 0.0014 11 6 5.5516 -2.6366 0.0001 12 7 6.0399 -4.0178 0.0009 13 6 7.3997 -4.2705 0.0005 14 7 8.2401 -3.2387 -0.0060 15 6 9.5507 -3.4160 -0.0018 16 8 10.3933 -2.3577 -0.0027 17 6 10.0497 -4.7404 -0.0012 18 6 11.4220 -5.0165 -0.0019 19 6 11.8467 -6.3125 -0.0017 20 7 13.2977 -6.6052 -0.0031 21 8 13.6861 -7.7595 -0.0034 22 8 14.1032 -5.6916 -0.0038 23 6 10.9343 -7.3640 -0.0014 24 6 9.5915 -7.1289 -0.0007 25 6 9.1199 -5.8088 -0.0008 26 7 7.8096 -5.5241 0.0007 27 1 -0.4849 0.8401 -0.0004 28 1 3.8752 -0.6797 0.8895 29 1 3.8746 -0.6808 -0.8905 30 1 3.6579 -3.1513 -0.8880 31 1 3.6586 -3.1495 0.8919 32 1 5.9142 -2.1238 -0.8908 33 1 5.9156 -2.1217 0.8892 34 1 5.4096 -4.7551 0.0016 35 1 10.6379 -2.0506 -0.8864 36 1 12.1393 -4.2091 -0.0025 37 1 11.2958 -8.3816 -0.0017 38 1 8.8954 -7.9546 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286039656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:42:00 Heat of formation + Delta-G solvation = 5.186407 kcal Electronic energy + Delta-G solvation = -24744.435724 eV Core-core repulsion = 20782.941554 eV Total energy + Delta-G solvation = -3961.494170 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.34968 -42.64382 -39.56032 -39.25274 -37.66525 -37.34786 -35.37902 -34.60608 -33.59953 -32.61805 -31.66680 -29.03147 -27.20665 -26.15218 -24.86520 -24.08670 -23.45975 -22.16097 -21.13757 -20.35257 -19.95930 -19.55621 -18.86614 -18.60368 -18.17809 -17.69145 -17.09319 -16.80783 -16.46967 -16.27739 -15.79829 -15.56373 -15.36891 -14.85208 -14.72794 -14.36537 -13.81756 -13.58338 -13.54277 -13.15750 -12.77076 -12.72846 -12.69933 -12.48824 -12.27642 -12.25774 -12.09127 -11.88355 -11.74377 -11.67403 -11.34830 -11.20528 -10.76725 -10.54872 -10.36236 -9.19738 -8.29681 -6.34307 -1.51490 -0.91370 -0.18173 0.32354 0.45906 1.37292 1.39412 1.47521 1.50803 1.52997 2.06595 2.36232 2.62478 2.90048 3.06138 3.08148 3.20732 3.40959 3.55038 3.89415 3.99253 4.09139 4.17275 4.37722 4.42450 4.47224 4.62433 4.71163 4.86267 4.93878 5.00445 5.02624 5.27792 5.40482 5.50357 5.54010 5.63822 5.69897 6.19498 6.26466 6.30906 6.48873 6.74369 6.98562 7.30546 8.86772 Molecular weight = 318.12amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.002160 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.620952 B =12958.544319 C =13756.861841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.533 4.533 8 H 0.034 0.966 9 C -0.009 4.009 10 C -0.105 4.105 11 C 0.142 3.858 12 N -0.672 5.672 13 C 0.604 3.396 14 N -0.597 5.597 15 C 0.483 3.517 16 O -0.465 6.465 17 C -0.249 4.249 18 C 0.058 3.942 19 C -0.089 4.089 20 N 0.036 4.964 21 O -0.174 6.174 22 O -0.184 6.184 23 C -0.018 4.018 24 C -0.107 4.107 25 C 0.247 3.753 26 N -0.594 5.594 27 H 0.266 0.734 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.425 0.575 35 H 0.443 0.557 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.679 -11.949 -1.914 29.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.196 4.196 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.047 4.047 10 C -0.143 4.143 11 C 0.019 3.981 12 N -0.304 5.304 13 C 0.247 3.753 14 N -0.330 5.330 15 C 0.280 3.720 16 O -0.277 6.277 17 C -0.259 4.259 18 C 0.036 3.964 19 C -0.174 4.174 20 N 0.551 4.449 21 O -0.388 6.388 22 O -0.395 6.395 23 C -0.040 4.040 24 C -0.127 4.127 25 C 0.115 3.885 26 N -0.323 5.323 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.265 0.735 35 H 0.310 0.690 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 24.677 -11.344 -1.353 27.193 hybrid contribution 0.559 0.504 -0.385 0.845 sum 25.236 -10.840 -1.738 27.521 Atomic orbital electron populations 1.70074 1.08373 1.28150 1.52643 1.26054 0.95635 1.03685 0.94208 0.85650 0.79603 0.78126 0.79231 1.19121 1.21382 1.16590 1.21479 0.92123 0.93125 1.50350 0.94795 1.19431 0.93823 0.94278 0.97139 1.21516 0.92249 0.98421 1.02091 1.21446 0.93891 0.80250 1.02525 1.44638 1.01052 1.10375 1.74371 1.19165 0.87087 0.83793 0.85300 1.67384 1.04618 1.36519 1.24499 1.19283 0.85236 0.85494 0.82025 1.84592 1.60347 1.45933 1.36877 1.19149 0.94717 0.94788 1.17225 1.20830 0.94860 0.95951 0.84745 1.20791 0.79336 0.96710 1.20568 1.43760 1.03958 1.00341 0.96874 1.94531 1.84249 1.06061 1.53993 1.94541 1.51236 1.39209 1.54555 1.20884 0.91243 1.00202 0.91675 1.20770 0.94708 0.94731 1.02535 1.19137 0.87161 0.94582 0.87644 1.68487 1.16085 1.18753 1.28966 0.92559 0.95780 0.95697 0.91860 0.92076 0.90865 0.91416 0.73522 0.68982 0.80126 0.80267 0.80263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 2 C 0.00 0.05 5.47 84.65 0.46 0.51 16 3 Si 0.95 42.65 27.47 68.60 1.88 44.53 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 7 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C -0.01 -0.37 4.04 29.85 0.12 -0.25 16 10 C -0.10 -3.49 5.27 30.59 0.16 -3.33 16 11 C 0.14 3.83 5.61 86.38 0.48 4.32 16 12 N -0.67 -16.10 5.70 -351.13 -2.00 -18.10 16 13 C 0.60 14.57 8.40 261.54 2.20 16.77 16 14 N -0.60 -13.79 9.52 -310.08 -2.95 -16.74 16 15 C 0.48 8.39 7.89 85.44 0.67 9.07 16 16 O -0.46 -5.25 12.92 -85.57 -1.11 -6.35 16 17 C -0.25 -4.03 5.75 -21.21 -0.12 -4.15 16 18 C 0.06 0.76 9.09 22.26 0.20 0.96 16 19 C -0.09 -1.33 6.81 36.18 0.25 -1.09 16 20 N 0.04 0.70 4.45 -46.93 -0.21 0.49 16 21 O -0.17 -3.62 18.40 18.89 0.35 -3.28 16 22 O -0.18 -3.88 18.38 18.89 0.35 -3.53 16 23 C -0.02 -0.21 9.46 22.06 0.21 0.00 16 24 C -0.11 -1.36 10.01 22.29 0.22 -1.14 16 25 C 0.25 4.51 6.61 40.11 0.27 4.78 16 26 N -0.59 -13.27 10.46 -191.89 -2.01 -15.27 16 27 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 28 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 29 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.43 9.18 8.58 -92.71 -0.80 8.39 16 35 H 0.44 0.12 9.06 -74.06 -0.67 -0.55 16 36 H 0.18 1.71 7.21 -2.91 -0.02 1.69 16 37 H 0.18 1.33 7.56 -2.91 -0.02 1.31 16 38 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -72.16 340.18 -0.40 -72.56 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -0.37 Total: 6.66 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.37 Total: -2.66 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -6.87 Total: -107.93 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.41 Total: -13.16 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.53 kcal Total: -72.16 -0.40 -72.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286039656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.749 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds