Wall clock time and date at job start Fri Apr 10 2020 23:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 5 5 S 1.81400 * 109.47145 * 295.00563 * 4 2 1 6 6 C 1.81401 * 103.00097 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47326 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47343 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00157 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00274 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99809 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47261 * 59.99839 * 12 10 8 14 14 H 1.48500 * 109.47316 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47200 * 299.99815 * 12 10 8 16 16 C 1.50703 * 109.47333 * 239.99727 * 2 1 3 17 17 C 1.38228 * 119.99566 * 299.72444 * 16 2 1 18 18 C 1.38242 * 119.99539 * 179.74140 * 17 16 2 19 19 C 1.38236 * 120.00086 * 0.55633 * 18 17 16 20 20 C 1.50691 * 120.00220 * 179.72200 * 19 18 17 21 21 F 1.39904 * 109.47309 * 269.97626 * 20 19 18 22 22 F 1.39898 * 109.47110 * 29.97634 * 20 19 18 23 23 F 1.39898 * 109.47310 * 149.97890 * 20 19 18 24 24 C 1.38244 * 119.99470 * 359.69957 * 19 18 17 25 25 C 1.38229 * 119.99797 * 120.00215 * 16 2 1 26 26 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 27 27 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 28 28 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47002 * 55.00002 * 4 2 1 30 30 H 1.08993 * 109.46955 * 175.00440 * 4 2 1 31 31 H 1.09007 * 109.46813 * 299.99841 * 6 5 4 32 32 H 1.08998 * 109.47330 * 59.99409 * 6 5 4 33 33 H 1.08997 * 109.47148 * 299.99952 * 7 6 5 34 34 H 1.09003 * 109.46887 * 59.99899 * 7 6 5 35 35 H 0.96996 * 119.99679 * 180.02562 * 11 10 8 36 36 H 1.08001 * 120.00464 * 359.97438 * 17 16 2 37 37 H 1.08000 * 119.99846 * 180.27640 * 18 17 16 38 38 H 1.08001 * 119.99208 * 180.02562 * 24 19 18 39 39 H 1.08000 * 120.00438 * 359.97438 * 25 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 16 1.5600 0.2157 2.7266 6 6 2.2416 -0.7803 4.0809 7 6 1.9169 -0.1126 5.4186 8 6 2.4826 -0.9403 6.5436 9 1 3.0204 -1.8513 6.3263 10 6 2.3138 -0.5346 7.8505 11 7 1.6593 0.5751 8.1152 12 14 3.0156 -1.5603 9.2450 13 1 4.4887 -1.6652 9.0895 14 1 2.6993 -0.9129 10.5435 15 1 2.4163 -2.9185 9.2108 16 6 2.0323 -0.7105 -1.2304 17 6 1.7031 -2.0355 -1.4462 18 6 2.1595 -2.6857 -2.5775 19 6 2.9547 -2.0141 -3.4873 20 6 3.4574 -2.7246 -4.7174 21 9 4.6899 -3.3249 -4.4383 22 9 2.5362 -3.7063 -5.0981 23 9 3.6128 -1.8025 -5.7579 24 6 3.2882 -0.6904 -3.2687 25 6 2.8271 -0.0387 -2.1403 26 1 -0.3635 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7197 1.2953 30 1 3.1262 -0.7993 1.2057 31 1 1.8016 -1.7773 4.0558 32 1 3.3229 -0.8574 3.9666 33 1 2.3572 0.8842 5.4435 34 1 0.8357 -0.0351 5.5331 35 1 1.5409 0.8606 9.0346 36 1 1.0862 -2.5618 -0.7328 37 1 1.8986 -3.7197 -2.7484 38 1 3.9091 -0.1656 -3.9797 39 1 3.0877 0.9954 -1.9696 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409871949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:42:55 Heat of formation + Delta-G solvation = -168.427745 kcal Electronic energy + Delta-G solvation = -22914.859722 eV Core-core repulsion = 18917.980801 eV Total energy + Delta-G solvation = -3996.878921 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.19681 -48.71471 -48.66819 -40.74136 -36.71057 -35.76404 -32.89557 -32.19206 -31.81264 -28.43560 -27.22013 -26.97198 -24.19802 -23.59123 -23.01395 -21.13361 -19.54437 -19.48298 -19.39084 -18.66446 -17.38733 -16.71541 -16.48465 -16.36170 -15.84564 -15.74906 -15.51792 -15.42858 -15.13138 -15.02453 -14.90222 -14.86545 -14.82964 -14.70835 -14.33144 -14.11298 -13.80150 -13.57888 -13.27584 -13.00798 -12.89021 -12.48426 -12.46756 -12.40705 -12.13596 -11.99482 -11.79851 -11.63927 -11.20124 -10.74422 -10.59800 -10.05775 -10.02932 -8.56804 -8.22900 -6.36350 -0.14161 0.27865 0.81671 1.41218 1.44063 1.52272 1.63812 1.79985 2.40507 2.44538 2.70204 3.00077 3.10236 3.39409 3.61841 3.69581 3.88819 3.95796 3.99468 4.27420 4.30305 4.36221 4.38692 4.41113 4.62785 4.66913 4.73238 4.88987 4.93892 4.97191 5.09565 5.16569 5.19247 5.37101 5.38637 5.51097 5.54684 5.74224 5.75949 6.11791 6.77920 7.33061 8.88530 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.002064 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.707864 B =13564.642924 C =14160.553766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.031 4.031 3 H 0.092 0.908 4 C -0.068 4.068 5 S -0.303 6.303 6 C -0.052 4.052 7 C 0.045 3.955 8 C -0.544 4.544 9 H 0.066 0.934 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.970 3.030 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.265 1.265 16 C -0.041 4.041 17 C -0.117 4.117 18 C -0.073 4.073 19 C -0.200 4.200 20 C 0.511 3.489 21 F -0.183 7.183 22 F -0.180 7.180 23 F -0.179 7.179 24 C -0.071 4.071 25 C -0.117 4.117 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.072 0.928 33 H -0.004 1.004 34 H -0.003 1.003 35 H 0.266 0.734 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -5.403 -27.850 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.050 4.050 3 H 0.110 0.890 4 C -0.216 4.216 5 S -0.075 6.075 6 C -0.200 4.200 7 C 0.007 3.993 8 C -0.583 4.583 9 H 0.084 0.916 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.794 3.206 13 H -0.190 1.190 14 H -0.209 1.209 15 H -0.190 1.190 16 C -0.043 4.043 17 C -0.135 4.135 18 C -0.091 4.091 19 C -0.201 4.201 20 C 0.457 3.543 21 F -0.164 7.164 22 F -0.162 7.162 23 F -0.161 7.161 24 C -0.089 4.089 25 C -0.135 4.135 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.163 0.837 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.081 -4.366 -27.688 28.051 hybrid contribution 1.005 -1.465 0.710 1.913 sum 2.086 -5.830 -26.978 27.680 Atomic orbital electron populations 1.21892 0.92759 1.03039 1.02494 1.19916 0.97233 0.99255 0.88626 0.88994 1.23478 1.03862 1.01333 0.92958 1.86892 1.76764 1.41052 1.02747 1.23314 1.01849 0.99883 0.94970 1.18660 0.95567 0.95008 0.90108 1.21527 1.35970 1.09083 0.91717 0.91591 1.26016 0.95393 0.96361 1.01948 1.70103 1.42283 1.24063 1.20580 0.85423 0.79115 0.78717 0.77330 1.19022 1.20857 1.18966 1.20091 0.95104 0.94212 0.94903 1.21207 1.00536 0.94312 0.97480 1.21105 0.94458 1.00809 0.92692 1.20051 1.06583 0.96945 0.96522 1.18359 0.75179 0.76880 0.83885 1.93222 1.44981 1.84564 1.93674 1.93183 1.66414 1.64187 1.92366 1.93182 1.95581 1.66158 1.61158 1.21130 0.97715 0.92330 0.97762 1.21315 0.97335 1.01467 0.93339 0.92319 0.91202 0.91565 0.89178 0.89911 0.90673 0.90927 0.98583 0.98481 0.92572 0.83678 0.83515 0.83264 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.83 71.98 0.64 -1.97 16 2 C -0.03 -0.56 2.56 -11.54 -0.03 -0.59 16 3 H 0.09 1.69 7.88 -2.38 -0.02 1.68 16 4 C -0.07 -1.57 5.12 71.98 0.37 -1.20 16 5 S -0.30 -10.33 20.55 -56.49 -1.16 -11.49 16 6 C -0.05 -2.13 5.88 71.98 0.42 -1.71 16 7 C 0.04 2.38 4.98 29.84 0.15 2.53 16 8 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 9 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 12 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 16 C -0.04 -0.65 4.78 -19.87 -0.09 -0.75 16 17 C -0.12 -1.74 8.76 22.27 0.20 -1.55 16 18 C -0.07 -1.07 9.40 22.27 0.21 -0.86 16 19 C -0.20 -3.14 5.45 -19.87 -0.11 -3.24 16 20 C 0.51 8.43 3.36 71.23 0.24 8.67 16 21 F -0.18 -3.35 17.30 44.97 0.78 -2.57 16 22 F -0.18 -3.07 16.46 44.97 0.74 -2.33 16 23 F -0.18 -3.00 16.46 44.97 0.74 -2.26 16 24 C -0.07 -1.00 9.40 22.27 0.21 -0.80 16 25 C -0.12 -1.64 9.67 22.27 0.22 -1.42 16 26 H 0.06 1.31 7.13 -2.39 -0.02 1.29 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.09 7.41 -2.38 -0.02 1.07 16 29 H 0.09 1.90 7.55 -2.39 -0.02 1.88 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.15 1.82 7.16 -2.91 -0.02 1.80 16 37 H 0.15 1.72 7.60 -2.91 -0.02 1.70 16 38 H 0.15 1.60 7.60 -2.91 -0.02 1.57 16 39 H 0.15 1.60 7.95 -2.91 -0.02 1.58 16 Total: -1.00 -64.03 352.88 7.57 -56.46 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 1.05 Total: 5.49 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.11 Total: -32.60 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.19 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.26 Total: -7.16 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.16 Total: -11.49 kcal Total: -64.03 7.57 -56.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409871949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.965 kcal (2) G-P(sol) polarization free energy of solvation -64.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds