Wall clock time and date at job start Fri Apr 10 2020 23:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46726 * 2 1 4 4 C 1.35437 * 116.99663 * 180.02562 * 3 2 1 5 5 N 1.32213 * 119.80380 * 359.97438 * 4 3 2 6 6 C 1.31898 * 121.80465 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.39864 * 180.02562 * 6 5 4 8 8 F 1.39901 * 109.47506 * 4.99923 * 7 6 5 9 9 F 1.39904 * 109.47057 * 245.00133 * 7 6 5 10 10 F 1.39898 * 109.47162 * 125.00564 * 7 6 5 11 11 C 1.38370 * 121.19960 * 0.27964 * 6 5 4 12 12 C 1.38327 * 119.46175 * 359.43183 * 11 6 5 13 13 C 1.40041 * 118.34242 * 0.54923 * 12 11 6 14 14 C 1.47424 * 120.60435 * 179.71019 * 13 12 11 15 15 O 1.21621 * 119.99845 * 156.04279 * 14 13 12 16 16 N 1.34774 * 119.99546 * 336.04596 * 14 13 12 17 17 C 1.46497 * 120.00464 * 15.70370 * 16 14 13 18 18 C 1.36903 * 119.99654 * 195.69893 * 16 14 13 19 19 H 1.07998 * 119.99675 * 4.87127 * 18 16 14 20 20 C 1.39022 * 120.00140 * 184.86509 * 18 16 14 21 21 N 1.31386 * 119.99432 * 40.32255 * 20 18 16 22 22 Si 1.86792 * 120.00360 * 220.32537 * 20 18 16 23 23 H 1.48505 * 109.47459 * 90.00016 * 22 20 18 24 24 H 1.48502 * 109.47353 * 209.99910 * 22 20 18 25 25 H 1.48503 * 109.47209 * 330.00130 * 22 20 18 26 26 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47233 * 299.99576 * 1 2 3 28 28 H 1.09002 * 109.47442 * 59.99731 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00424 * 2 1 3 30 30 H 1.08994 * 109.47189 * 120.00003 * 2 1 3 31 31 H 1.08000 * 120.26576 * 179.72326 * 11 6 5 32 32 H 1.07992 * 120.82545 * 180.28645 * 12 11 6 33 33 H 1.08999 * 109.47184 * 67.56265 * 17 16 14 34 34 H 1.08998 * 109.47810 * 187.56724 * 17 16 14 35 35 H 1.09006 * 109.46666 * 307.56888 * 17 16 14 36 36 H 0.97006 * 119.99380 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1507 0.4735 -0.0005 6 6 5.4636 0.6006 -0.0005 7 6 6.3264 -0.6350 -0.0011 8 9 5.5161 -1.7696 -0.1165 9 9 7.0505 -0.6987 1.1943 10 9 7.2137 -0.5836 -1.0815 11 6 6.0630 1.8477 0.0052 12 6 5.2723 2.9827 -0.0009 13 6 3.8809 2.8236 -0.0009 14 6 2.9911 3.9990 -0.0008 15 8 1.8567 3.9029 -0.4286 16 7 3.4349 5.1800 0.4732 17 6 4.8706 5.3996 0.6649 18 6 2.5440 6.1746 0.7754 19 1 1.4825 5.9871 0.7092 20 6 3.0057 7.4258 1.1677 21 7 4.0475 7.9586 0.5701 22 14 2.1451 8.3496 2.5444 23 1 2.7638 7.9885 3.8452 24 1 2.2812 9.8113 2.3204 25 1 0.7060 7.9834 2.5622 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 7.1395 1.9342 0.0096 32 1 5.7168 3.9669 -0.0012 33 1 5.3674 5.4219 -0.3050 34 1 5.0279 6.3495 1.1757 35 1 5.2846 4.5905 1.2667 36 1 4.3698 8.8315 0.8441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429659716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:00 Heat of formation + Delta-G solvation = -139.340217 kcal Electronic energy + Delta-G solvation = -27216.717389 eV Core-core repulsion = 22674.806584 eV Total energy + Delta-G solvation = -4541.910806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.13881 -47.67943 -47.58367 -40.71658 -38.43295 -37.79682 -34.98752 -33.13093 -32.04890 -31.63557 -30.35720 -27.10207 -26.97994 -24.86603 -23.66792 -22.88119 -22.01120 -19.97566 -18.94777 -18.53293 -18.42150 -17.47641 -17.19412 -16.50087 -16.07812 -15.73831 -15.19662 -14.60812 -14.46757 -14.42059 -14.32637 -14.06187 -13.90075 -13.77317 -13.75422 -13.63376 -13.58291 -13.49698 -12.61205 -12.46681 -12.23060 -12.10642 -11.89967 -11.77930 -11.53024 -11.29433 -10.75933 -10.61077 -10.52715 -10.40379 -9.81532 -9.67224 -9.08090 -8.54530 -8.35841 -8.07780 -6.84386 -3.88696 0.63671 1.35896 2.47342 2.97174 3.12714 3.16537 3.21865 3.33440 3.54799 3.88884 3.99589 4.06666 4.42371 4.51421 4.74864 4.78459 5.03885 5.07699 5.17801 5.18474 5.32335 5.48621 5.55506 5.78798 5.90453 5.94670 6.00570 6.13444 6.22851 6.24606 6.41606 6.81697 7.25555 7.43124 7.68462 7.87290 8.19135 8.91507 9.10341 9.77682 10.19153 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.004247 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.561721 B = 6590.869769 C = 7953.370405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.263 6.263 4 C 0.360 3.640 5 N -0.512 5.512 6 C 0.055 3.945 7 C 0.524 3.476 8 F -0.166 7.166 9 F -0.174 7.174 10 F -0.173 7.173 11 C -0.158 4.158 12 C -0.077 4.077 13 C -0.128 4.128 14 C 0.464 3.536 15 O -0.567 6.567 16 N -0.418 5.418 17 C 0.055 3.945 18 C -0.308 4.308 19 H 0.115 0.885 20 C 0.042 3.958 21 N -0.826 5.826 22 Si 0.910 3.090 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.263 1.263 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.188 0.812 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.049 0.951 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.849 -11.674 1.103 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.167 6.167 4 C 0.177 3.823 5 N -0.237 5.237 6 C -0.083 4.083 7 C 0.469 3.531 8 F -0.148 7.148 9 F -0.155 7.155 10 F -0.155 7.155 11 C -0.179 4.179 12 C -0.102 4.102 13 C -0.135 4.135 14 C 0.254 3.746 15 O -0.452 6.452 16 N -0.134 5.134 17 C -0.088 4.088 18 C -0.435 4.435 19 H 0.133 0.867 20 C -0.167 4.167 21 N -0.461 5.461 22 Si 0.735 3.265 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.187 1.187 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.205 0.795 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.782 -12.165 0.884 13.101 hybrid contribution 0.498 0.787 0.572 1.093 sum 5.280 -11.377 1.456 12.627 Atomic orbital electron populations 1.21766 0.92959 1.02173 1.03845 1.22649 0.95187 0.81703 1.02022 1.86576 1.15014 1.29065 1.86081 1.19539 0.84186 0.87808 0.90780 1.66687 1.04342 1.33716 1.18998 1.20396 0.90308 0.92130 1.05452 1.17929 0.78186 0.83211 0.73774 1.93206 1.72739 1.53208 1.95603 1.93220 1.78949 1.96637 1.46721 1.93214 1.69964 1.96553 1.55750 1.21541 1.01668 0.91406 1.03299 1.23210 0.91932 1.01559 0.93530 1.20611 0.94499 0.93484 1.04910 1.17159 0.87981 0.82855 0.86560 1.90674 1.20382 1.84138 1.50006 1.43661 1.06070 1.11142 1.52544 1.22565 0.82173 1.03833 1.00238 1.19855 0.91507 0.90545 1.41581 0.86730 1.25296 0.96986 0.96251 0.98134 1.70223 1.25919 1.16173 1.33750 0.86182 0.80811 0.77827 0.81729 1.19831 1.20803 1.18741 0.90741 0.91541 0.91385 0.91846 0.91934 0.83736 0.79525 0.92737 0.87238 0.93257 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 37.16 0.38 -1.54 16 2 C 0.06 0.92 6.03 37.16 0.22 1.14 16 3 O -0.26 -5.32 8.50 -38.17 -0.32 -5.64 16 4 C 0.36 7.14 7.49 -16.59 -0.12 7.02 16 5 N -0.51 -9.07 8.57 -9.18 -0.08 -9.15 16 6 C 0.05 0.85 6.27 -82.51 -0.52 0.33 16 7 C 0.52 7.18 3.31 36.01 0.12 7.30 16 8 F -0.17 -2.40 16.84 2.25 0.04 -2.36 16 9 F -0.17 -2.26 17.28 2.25 0.04 -2.22 16 10 F -0.17 -2.23 17.16 2.25 0.04 -2.19 16 11 C -0.16 -2.23 9.57 -39.50 -0.38 -2.61 16 12 C -0.08 -1.26 8.02 -38.87 -0.31 -1.57 16 13 C -0.13 -2.60 5.80 -104.69 -0.61 -3.21 16 14 C 0.46 11.40 7.34 -12.52 -0.09 11.31 16 15 O -0.57 -15.92 15.29 -14.91 -0.23 -16.15 16 16 N -0.42 -10.15 3.02 -124.09 -0.37 -10.52 16 17 C 0.06 1.09 7.82 59.85 0.47 1.56 16 18 C -0.31 -8.05 9.29 -15.00 -0.14 -8.19 16 19 H 0.12 3.20 7.51 -52.49 -0.39 2.80 16 20 C 0.04 1.01 4.57 -17.45 -0.08 0.93 16 21 N -0.83 -19.77 11.23 55.50 0.62 -19.15 16 22 Si 0.91 18.63 29.69 -169.99 -5.05 13.58 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 31 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.19 2.76 3.37 -53.37 -0.18 2.58 16 33 H 0.05 1.00 6.95 -51.93 -0.36 0.64 16 34 H 0.11 2.31 5.12 -51.93 -0.27 2.04 16 35 H 0.05 0.83 5.65 -51.93 -0.29 0.53 16 36 H 0.28 6.11 8.31 -40.82 -0.34 5.77 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -29.56 320.29 -4.70 -34.26 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -3.16 Total: 2.24 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -1.06 Total: 12.47 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.17 Total: -38.81 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.55 Total: -21.79 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.12 Total: -6.78 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.05 Total: 13.58 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.56 -4.70 -34.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429659716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.081 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds