Wall clock time and date at job start Fri Apr 10 2020 23:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46726 * 2 1 4 4 C 1.35437 * 116.99663 * 180.02562 * 3 2 1 5 5 N 1.32213 * 119.80380 * 359.97438 * 4 3 2 6 6 C 1.31898 * 121.80465 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.39864 * 180.02562 * 6 5 4 8 8 F 1.39901 * 109.47506 * 4.99923 * 7 6 5 9 9 F 1.39904 * 109.47057 * 245.00133 * 7 6 5 10 10 F 1.39898 * 109.47162 * 125.00564 * 7 6 5 11 11 C 1.38370 * 121.19960 * 0.27964 * 6 5 4 12 12 C 1.38327 * 119.46175 * 359.43183 * 11 6 5 13 13 C 1.40041 * 118.34242 * 0.54923 * 12 11 6 14 14 C 1.47424 * 120.60435 * 179.71019 * 13 12 11 15 15 O 1.21621 * 119.99845 * 156.04279 * 14 13 12 16 16 N 1.34774 * 119.99546 * 336.04596 * 14 13 12 17 17 C 1.46497 * 120.00464 * 15.70370 * 16 14 13 18 18 C 1.36903 * 119.99654 * 195.69893 * 16 14 13 19 19 H 1.07998 * 119.99675 * 4.87127 * 18 16 14 20 20 C 1.39022 * 120.00140 * 184.86509 * 18 16 14 21 21 N 1.31386 * 119.99432 * 40.32255 * 20 18 16 22 22 Si 1.86792 * 120.00360 * 220.32537 * 20 18 16 23 23 H 1.48505 * 109.47459 * 90.00016 * 22 20 18 24 24 H 1.48502 * 109.47353 * 209.99910 * 22 20 18 25 25 H 1.48503 * 109.47209 * 330.00130 * 22 20 18 26 26 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47233 * 299.99576 * 1 2 3 28 28 H 1.09002 * 109.47442 * 59.99731 * 1 2 3 29 29 H 1.08996 * 109.47233 * 240.00424 * 2 1 3 30 30 H 1.08994 * 109.47189 * 120.00003 * 2 1 3 31 31 H 1.08000 * 120.26576 * 179.72326 * 11 6 5 32 32 H 1.07992 * 120.82545 * 180.28645 * 12 11 6 33 33 H 1.08999 * 109.47184 * 67.56265 * 17 16 14 34 34 H 1.08998 * 109.47810 * 187.56724 * 17 16 14 35 35 H 1.09006 * 109.46666 * 307.56888 * 17 16 14 36 36 H 0.97006 * 119.99380 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1507 0.4735 -0.0005 6 6 5.4636 0.6006 -0.0005 7 6 6.3264 -0.6350 -0.0011 8 9 5.5161 -1.7696 -0.1165 9 9 7.0505 -0.6987 1.1943 10 9 7.2137 -0.5836 -1.0815 11 6 6.0630 1.8477 0.0052 12 6 5.2723 2.9827 -0.0009 13 6 3.8809 2.8236 -0.0009 14 6 2.9911 3.9990 -0.0008 15 8 1.8567 3.9029 -0.4286 16 7 3.4349 5.1800 0.4732 17 6 4.8706 5.3996 0.6649 18 6 2.5440 6.1746 0.7754 19 1 1.4825 5.9871 0.7092 20 6 3.0057 7.4258 1.1677 21 7 4.0475 7.9586 0.5701 22 14 2.1451 8.3496 2.5444 23 1 2.7638 7.9885 3.8452 24 1 2.2812 9.8113 2.3204 25 1 0.7060 7.9834 2.5622 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 7.1395 1.9342 0.0096 32 1 5.7168 3.9669 -0.0012 33 1 5.3674 5.4219 -0.3050 34 1 5.0279 6.3495 1.1757 35 1 5.2846 4.5905 1.2667 36 1 4.3698 8.8315 0.8441 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429659716.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:00 Heat of formation + Delta-G solvation = -158.023044 kcal Electronic energy + Delta-G solvation = -27217.527538 eV Core-core repulsion = 22674.806584 eV Total energy + Delta-G solvation = -4542.720954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.23087 -48.74020 -48.69521 -42.16034 -40.12077 -39.22343 -36.83866 -34.72000 -33.38881 -33.21815 -31.63352 -28.70748 -28.41948 -26.51262 -24.98501 -24.22836 -23.28665 -21.62205 -20.22815 -19.61396 -19.59913 -19.17718 -18.59997 -18.06607 -17.43691 -17.22374 -16.91314 -16.08169 -16.00325 -15.64838 -15.53018 -15.37756 -15.13049 -15.07235 -14.93783 -14.88747 -14.83861 -14.83642 -14.17512 -13.66623 -13.60388 -13.55977 -13.45221 -13.27834 -13.15368 -12.52551 -12.39590 -12.14966 -12.08550 -11.82873 -11.21543 -11.13078 -10.85818 -10.38728 -9.91432 -9.75577 -8.64710 -5.83363 -0.73017 0.01454 1.26639 1.32447 1.44347 1.54427 1.80382 1.92829 2.21285 2.37651 2.43035 2.78341 2.83179 2.99099 3.29904 3.50825 3.67202 3.72827 3.93813 4.01773 4.06801 4.15295 4.36520 4.42135 4.55477 4.71321 4.76255 4.82228 4.88636 5.06895 5.17067 5.22463 5.41615 5.92800 6.08835 6.32488 6.41575 7.06593 7.30320 7.95205 8.39572 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.015334 B = 0.004247 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.561721 B = 6590.869769 C = 7953.370405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.296 6.296 4 C 0.347 3.653 5 N -0.515 5.515 6 C 0.059 3.941 7 C 0.535 3.465 8 F -0.170 7.170 9 F -0.165 7.165 10 F -0.163 7.163 11 C -0.143 4.143 12 C -0.055 4.055 13 C -0.160 4.160 14 C 0.455 3.545 15 O -0.620 6.620 16 N -0.431 5.431 17 C 0.056 3.944 18 C -0.363 4.363 19 H 0.076 0.924 20 C 0.025 3.975 21 N -0.841 5.841 22 Si 0.972 3.028 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.278 1.278 26 H 0.111 0.889 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.194 0.806 32 H 0.206 0.794 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -12.784 1.837 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.201 6.201 4 C 0.165 3.835 5 N -0.240 5.240 6 C -0.079 4.079 7 C 0.480 3.520 8 F -0.151 7.151 9 F -0.146 7.146 10 F -0.144 7.144 11 C -0.163 4.163 12 C -0.080 4.080 13 C -0.167 4.167 14 C 0.246 3.754 15 O -0.508 6.508 16 N -0.147 5.147 17 C -0.086 4.086 18 C -0.489 4.489 19 H 0.094 0.906 20 C -0.183 4.183 21 N -0.475 5.475 22 Si 0.795 3.205 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.203 1.203 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.211 0.789 32 H 0.222 0.778 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.571 -13.279 1.622 15.371 hybrid contribution -0.222 0.914 0.269 0.978 sum 7.349 -12.365 1.890 14.508 Atomic orbital electron populations 1.21806 0.91337 1.04244 1.02808 1.22938 0.96532 0.80025 1.02573 1.86560 1.15694 1.31729 1.86150 1.19631 0.84457 0.88120 0.91274 1.66753 1.05285 1.32857 1.19114 1.21020 0.89932 0.93917 1.03074 1.17593 0.77988 0.82183 0.74283 1.93210 1.73010 1.53275 1.95652 1.93249 1.78574 1.96517 1.46244 1.93246 1.69434 1.96441 1.55315 1.21995 1.03767 0.89648 1.00889 1.23413 0.90138 1.03299 0.91157 1.20442 0.95785 0.92130 1.08318 1.17827 0.88001 0.84044 0.85520 1.90607 1.22824 1.85297 1.52113 1.43798 1.07514 1.10779 1.52605 1.22718 0.80037 1.04385 1.01429 1.19575 0.90543 0.92483 1.46342 0.90635 1.25878 0.97757 0.96042 0.98660 1.70214 1.26626 1.16766 1.33913 0.85291 0.78964 0.77065 0.79227 1.18547 1.19474 1.20250 0.87005 0.92397 0.92574 0.91321 0.91109 0.78890 0.77806 0.91330 0.88486 0.89971 0.90337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 10.28 71.98 0.74 -2.99 16 2 C 0.05 1.67 6.03 71.98 0.43 2.10 16 3 O -0.30 -12.42 8.50 -68.04 -0.58 -13.00 16 4 C 0.35 13.82 7.49 85.15 0.64 14.46 16 5 N -0.52 -17.42 8.57 -295.99 -2.54 -19.95 16 6 C 0.06 1.64 6.27 42.58 0.27 1.90 16 7 C 0.53 12.62 3.31 71.24 0.24 12.86 16 8 F -0.17 -4.41 16.84 44.97 0.76 -3.66 16 9 F -0.16 -3.59 17.28 44.97 0.78 -2.82 16 10 F -0.16 -3.50 17.16 44.97 0.77 -2.73 16 11 C -0.14 -3.41 9.57 22.32 0.21 -3.20 16 12 C -0.05 -1.65 8.02 22.73 0.18 -1.47 16 13 C -0.16 -6.54 5.80 -19.91 -0.12 -6.65 16 14 C 0.45 23.38 7.34 86.66 0.64 24.01 16 15 O -0.62 -37.31 15.29 15.19 0.23 -37.07 16 16 N -0.43 -21.64 3.02 -664.76 -2.01 -23.65 16 17 C 0.06 2.18 7.82 127.77 1.00 3.18 16 18 C -0.36 -19.98 9.29 84.09 0.78 -19.20 16 19 H 0.08 4.62 7.51 -2.91 -0.02 4.59 16 20 C 0.02 1.21 4.57 84.95 0.39 1.60 16 21 N -0.84 -40.24 11.23 21.68 0.24 -39.99 16 22 Si 0.97 38.77 29.69 68.60 2.04 40.81 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 25 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 26 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 2.00 8.10 -2.39 -0.02 1.98 16 30 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 31 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.21 5.36 3.37 -3.74 -0.01 5.35 16 33 H 0.07 2.41 6.95 -2.39 -0.02 2.39 16 34 H 0.10 4.03 5.12 -2.39 -0.01 4.02 16 35 H 0.08 2.57 5.65 -2.38 -0.01 2.55 16 36 H 0.29 12.42 8.31 -92.70 -0.77 11.64 16 Total: -1.00 -68.81 320.29 6.25 -62.56 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.15 Total: 12.90 kcal Atomic # 6 Polarization: 21.20 SS G_CDS: 5.40 Total: 26.60 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -4.30 Total: -83.60 kcal Atomic # 8 Polarization: -49.73 SS G_CDS: -0.35 Total: -50.08 kcal Atomic # 9 Polarization: -11.50 SS G_CDS: 2.31 Total: -9.20 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.04 Total: 40.81 kcal Total: -68.81 6.25 -62.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429659716.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.463 kcal (2) G-P(sol) polarization free energy of solvation -68.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds