Wall clock time and date at job start Fri Apr 10 2020 23:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00430 * 2 1 4 4 C 1.52994 * 109.47467 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47036 * 65.00505 * 4 3 2 6 6 C 1.36881 * 119.99440 * 281.89159 * 5 4 3 7 7 H 1.07991 * 120.00517 * 315.07824 * 6 5 4 8 8 C 1.39052 * 119.99525 * 135.07956 * 6 5 4 9 9 N 1.31357 * 120.00362 * 337.77071 * 8 6 5 10 10 Si 1.86801 * 119.99800 * 157.77181 * 8 6 5 11 11 H 1.48498 * 109.47327 * 89.99828 * 10 8 6 12 12 H 1.48498 * 109.47114 * 210.00136 * 10 8 6 13 13 H 1.48500 * 109.47100 * 329.99707 * 10 8 6 14 14 C 1.34769 * 120.00460 * 101.89416 * 5 4 3 15 15 O 1.21598 * 120.00159 * 186.71508 * 14 5 4 16 16 C 1.47722 * 119.99893 * 6.71115 * 14 5 4 17 17 C 1.39629 * 120.56876 * 323.38914 * 16 14 5 18 18 N 1.31650 * 120.55482 * 179.97438 * 17 16 14 19 19 C 1.31957 * 121.88877 * 359.97438 * 18 17 16 20 20 C 1.38328 * 121.09557 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.34267 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.47264 * 359.97438 * 21 20 19 23 23 F 1.39905 * 109.46973 * 119.99626 * 21 20 19 24 24 F 1.39895 * 109.47065 * 239.99693 * 21 20 19 25 25 C 1.38371 * 119.31073 * 359.97438 * 20 19 18 26 26 H 1.09003 * 109.47564 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47028 * 299.99908 * 1 2 3 28 28 H 1.09003 * 109.47037 * 59.99908 * 1 2 3 29 29 H 1.09002 * 109.46969 * 59.99911 * 3 2 1 30 30 H 1.09003 * 109.47159 * 300.00316 * 3 2 1 31 31 H 1.08995 * 109.47450 * 305.00464 * 4 3 2 32 32 H 1.09002 * 109.47393 * 184.99577 * 4 3 2 33 33 H 0.97004 * 120.00486 * 185.05536 * 9 8 6 34 34 H 1.08000 * 119.72261 * 359.97438 * 17 16 14 35 35 H 1.07999 * 119.45388 * 180.02562 * 19 18 17 36 36 H 1.08004 * 120.85466 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 3.8672 -0.7901 -1.4191 7 1 4.1679 -1.4588 -0.6262 8 6 3.3688 -1.3045 -2.6109 9 7 2.6140 -0.5575 -3.3841 10 14 3.7727 -3.0580 -3.1126 11 1 2.7397 -3.9779 -2.5723 12 1 3.7967 -3.1559 -4.5941 13 1 5.1029 -3.4341 -2.5701 14 6 4.4902 1.3261 -2.2366 15 8 4.7428 0.8318 -3.3185 16 6 4.7464 2.7620 -2.0027 17 6 3.8787 3.5186 -1.2126 18 7 4.1075 4.7982 -1.0039 19 6 5.1524 5.4135 -1.5244 20 6 6.0589 4.7344 -2.3185 21 6 7.2462 5.4540 -2.9048 22 9 7.2199 6.7958 -2.5098 23 9 8.4258 4.8561 -2.4486 24 9 7.1946 5.3783 -4.3008 25 6 5.8643 3.3875 -2.5689 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5684 0.8426 32 1 3.9785 2.1764 0.0901 33 1 2.2063 -0.9380 -4.1778 34 1 3.0126 3.0502 -0.7689 35 1 5.3024 6.4646 -1.3272 36 1 6.5562 2.8331 -3.1856 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457207431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:43:13 Heat of formation + Delta-G solvation = -152.135406 kcal Electronic energy + Delta-G solvation = -27437.076653 eV Core-core repulsion = 22894.611006 eV Total energy + Delta-G solvation = -4542.465647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.18415 -47.72114 -47.61880 -40.48073 -38.28282 -36.97675 -34.49133 -32.95069 -32.60587 -31.11687 -29.07626 -26.43605 -25.81565 -25.35139 -23.56051 -22.77935 -22.06545 -19.92325 -18.50365 -18.48834 -18.28153 -17.22099 -16.87623 -16.26949 -15.85077 -15.50333 -15.21791 -14.66564 -14.53787 -14.39990 -14.32665 -14.09328 -14.05420 -13.84043 -13.79806 -13.62407 -13.14579 -13.08727 -13.02408 -12.67635 -12.21382 -11.67492 -11.50001 -11.33911 -11.08249 -10.85846 -10.78293 -10.48923 -10.20676 -9.92622 -9.71952 -9.07293 -9.02627 -8.80169 -8.27538 -7.28454 -6.19726 -3.85313 0.71163 1.13222 2.60212 3.28143 3.38344 3.40303 3.42728 3.64199 3.94760 4.16373 4.27215 4.34105 4.42308 4.49887 4.68401 4.80393 4.98718 5.09264 5.29149 5.41388 5.55397 5.66734 5.74631 5.76331 5.83909 5.86390 5.96932 5.99903 6.14940 6.19652 6.47019 6.51940 7.57792 7.80516 7.83876 8.15858 8.88892 8.98768 9.49666 10.05893 10.88553 Molecular weight = 318.10amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.004492 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.158691 B = 6231.561138 C = 7446.732282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.346 6.346 3 C 0.052 3.948 4 C 0.080 3.920 5 N -0.423 5.423 6 C -0.324 4.324 7 H 0.085 0.915 8 C 0.080 3.920 9 N -0.814 5.814 10 Si 0.911 3.089 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.270 1.270 14 C 0.492 3.508 15 O -0.525 6.525 16 C -0.139 4.139 17 C 0.120 3.880 18 N -0.481 5.481 19 C 0.136 3.864 20 C -0.245 4.245 21 C 0.519 3.481 22 F -0.178 7.178 23 F -0.175 7.175 24 F -0.174 7.174 25 C 0.007 3.993 26 H 0.078 0.922 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.265 0.735 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.020 10.180 5.724 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.264 6.264 3 C -0.026 4.026 4 C -0.045 4.045 5 N -0.143 5.143 6 C -0.451 4.451 7 H 0.102 0.898 8 C -0.132 4.132 9 N -0.446 5.446 10 Si 0.738 3.262 11 H -0.208 1.208 12 H -0.210 1.210 13 H -0.195 1.195 14 C 0.280 3.720 15 O -0.403 6.403 16 C -0.145 4.145 17 C -0.037 4.037 18 N -0.189 5.189 19 C -0.022 4.022 20 C -0.248 4.248 21 C 0.464 3.536 22 F -0.159 7.159 23 F -0.157 7.157 24 F -0.156 7.156 25 C -0.019 4.019 26 H 0.096 0.904 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.196 0.804 35 H 0.183 0.817 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.638 10.224 5.466 11.709 hybrid contribution 0.472 -0.820 -0.933 1.329 sum 2.110 9.404 4.533 10.651 Atomic orbital electron populations 1.22617 0.83058 1.01931 0.98635 1.88176 1.17582 1.25756 1.94870 1.22889 0.94953 0.86132 0.98653 1.22190 0.92285 0.98778 0.91198 1.43129 1.51921 1.07142 1.12078 1.18918 1.44449 0.79447 1.02266 0.89783 1.25203 0.93287 0.98296 0.96457 1.69816 1.24532 1.36645 1.13598 0.86229 0.79015 0.82998 0.77935 1.20795 1.21028 1.19506 1.17548 0.83825 0.83669 0.86979 1.90668 1.54081 1.72391 1.23197 1.21688 0.95887 0.98501 0.98390 1.23991 0.98436 0.88932 0.92336 1.67863 1.18695 1.10524 1.21846 1.22644 0.88501 1.00215 0.90855 1.20896 0.99282 0.96750 1.07912 1.18055 0.82795 0.76671 0.76109 1.93150 1.96617 1.35445 1.90693 1.93225 1.50234 1.83446 1.88775 1.93233 1.96524 1.96042 1.29773 1.21335 0.95626 0.91612 0.93335 0.90385 0.95519 0.94611 0.94101 0.93448 0.90795 0.89875 0.92526 0.80422 0.81686 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.35 -6.91 9.61 -35.23 -0.34 -7.25 16 3 C 0.05 0.91 5.22 37.15 0.19 1.10 16 4 C 0.08 1.46 5.34 -4.05 -0.02 1.44 16 5 N -0.42 -9.95 2.52 -115.93 -0.29 -10.25 16 6 C -0.32 -8.46 8.14 -15.00 -0.12 -8.58 16 7 H 0.08 2.15 7.92 -52.49 -0.42 1.73 16 8 C 0.08 2.16 4.25 -17.45 -0.07 2.09 16 9 N -0.81 -23.01 11.89 55.50 0.66 -22.35 16 10 Si 0.91 21.36 29.61 -169.99 -5.03 16.33 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 C 0.49 11.93 6.85 -12.39 -0.08 11.84 16 15 O -0.52 -14.91 14.53 5.28 0.08 -14.84 16 16 C -0.14 -2.69 5.44 -104.82 -0.57 -3.26 16 17 C 0.12 2.03 8.57 -17.11 -0.15 1.88 16 18 N -0.48 -7.44 10.34 -12.89 -0.13 -7.57 16 19 C 0.14 1.87 10.59 -17.46 -0.18 1.69 16 20 C -0.24 -3.58 5.38 -104.54 -0.56 -4.14 16 21 C 0.52 6.86 3.33 36.01 0.12 6.98 16 22 F -0.18 -2.11 15.99 2.25 0.04 -2.07 16 23 F -0.18 -2.38 17.24 2.25 0.04 -2.34 16 24 F -0.17 -2.46 17.24 2.25 0.04 -2.42 16 25 C 0.01 0.13 9.36 -38.85 -0.36 -0.23 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.89 7.09 -51.93 -0.37 0.52 16 31 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 32 H 0.08 1.34 4.15 -51.93 -0.22 1.12 16 33 H 0.26 7.23 8.32 -40.82 -0.34 6.89 16 34 H 0.18 2.88 3.45 -52.49 -0.18 2.70 16 35 H 0.17 1.76 7.15 -52.49 -0.38 1.38 16 36 H 0.15 2.58 8.06 -52.48 -0.42 2.16 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -31.33 320.62 -4.05 -35.37 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.23 Total: 0.08 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: -0.70 Total: 12.47 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.23 Total: -40.17 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.26 Total: -22.09 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.33 -4.05 -35.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457207431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.762 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds